| Selected features |
| HIV-1_5_LTR | | 466 - 646 |  | HIV-1_5_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a
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| truncHIV-1_3_LTR | | 466 - 646 |  | truncHIV-1_3_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a
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| HIV-1_psi_pack | | 757 - 801 |  | HIV-1_psi_pack |  | tgagtacgccaaaaattttgactagcggaggctagaaggagagag
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| RRE | | 1311 - 1544 |  | RRE |  | aggagctttgttccttgggttcttgggagcagcaggaagcactatgggcgcagcctcaat gacgctgacggtacaggccagacaattattgtctggtatagtgcagcagcagaacaattt gctgagggctattgaggcgcaacagcatctgttgcaactcacagtctggggcatcaagca gctccaggcaagaatcctggctgtggaaagatacctaaaggatcaacagctcct
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| ORF frame 3 | | 1650 - 2312 |  | ORF frame 3 |  | atggagtgggacagagaaattaacaattacacaagcttaatacactccttaattgaagaa tcgcaaaaccagcaagaaaagaatgaacaagaattattggaattagataaatgggcaagt ttgtggaattggtttaacataacaaattggctgtggtatataaaattattcataatgata gtaggaggcttggtaggtttaagaatagtttttgctgtactttctatagtgaatagagtt aggcagggatattcaccattatcgtttcagacccacctcccaaccccgaggggacccgac aggcccgaaggaatagaagaagaaggtggagagagagacagagacagatccattcgatta gtgaacggatctcgacggtatcggttaacttttaaaagaaaaggggggattggggggtac agtgcaggggaaagaatagtagacataatagcaacagacatacaaactaaagaattacaa aaacaaattacaaaaattcaaaattttatcgatcacgagactagcctcgacgatggtcga gtaccgggtaggggaggcgcttttcccaaggcagtctggagcatgcgctttagcagcccc gctgggcacttggcgctacacaagtggcctctggcctcgcacacattccacatccaccgg tag
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| cPPT | | 2043 - 2058 |  | cPPT |  | aaaagaaaagggggga
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| MSCV_rev_primer | | 2253 - 2230 |  | MSCV_rev_primer |  | cagcggggctgctaaagcgcatgc
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| mPGK_F_primer | | 2627 - 2646 |  | mPGK_F_primer |  | cattctgcacgcttcaaaag
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| EGFP_N_primer | | 2817 - 2796 |  | EGFP_N_primer |  | cgtcgccgtccagctcgaccag
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| EGFP | | 2751 - 3467 |  | EGFP |  | atggtgagcaagggcgaggagctgttcaccggggtggtgcccatcctggtcgagctggac ggcgacgtaaacggccacaagttcagcgtgtccggcgagggcgagggcgatgccacctac ggcaagctgaccctgaagttcatctgcaccaccggcaagctgcccgtgccctggcccacc ctcgtgaccaccctgacctacggcgtgcagtgcttcagccgctaccccgaccacatgaag cagcacgacttcttcaagtccgccatgcccgaaggctacgtccaggagcgcaccatcttc ttcaaggacgacggcaactacaagacccgcgccgaggtgaagttcgagggcgacaccctg gtgaaccgcatcgagctgaagggcatcgacttcaaggaggacggcaacatcctggggcac aagctggagtacaactacaacagccacaacgtctatatcatggccgacaagcagaagaac ggcatcaaggtgaacttcaagatccgccacaacatcgaggacggcagcgtgcagctcgcc gaccactaccagcagaacacccccatcggcgacggccccgtgctgctgcccgacaaccac tacctgagcacccagtccgccctgagcaaagaccccaacgagaagcgcgatcacatggtc ctgctggagttcgtgaccgccgccgggatcactctcggcatggacgagctgtacaag
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| ORF frame 3 | | 2751 - 3500 |  | ORF frame 3 |  | atggtgagcaagggcgaggagctgttcaccggggtggtgcccatcctggtcgagctggac ggcgacgtaaacggccacaagttcagcgtgtccggcgagggcgagggcgatgccacctac ggcaagctgaccctgaagttcatctgcaccaccggcaagctgcccgtgccctggcccacc ctcgtgaccaccctgacctacggcgtgcagtgcttcagccgctaccccgaccacatgaag cagcacgacttcttcaagtccgccatgcccgaaggctacgtccaggagcgcaccatcttc ttcaaggacgacggcaactacaagacccgcgccgaggtgaagttcgagggcgacaccctg gtgaaccgcatcgagctgaagggcatcgacttcaaggaggacggcaacatcctggggcac aagctggagtacaactacaacagccacaacgtctatatcatggccgacaagcagaagaac ggcatcaaggtgaacttcaagatccgccacaacatcgaggacggcagcgtgcagctcgcc gaccactaccagcagaacacccccatcggcgacggccccgtgctgctgcccgacaaccac tacctgagcacccagtccgccctgagcaaagaccccaacgagaagcgcgatcacatggtc ctgctggagttcgtgaccgccgccgggatcactctcggcatggacgagctgtacaagtcc ggactcagatctcgactagctagtagctag
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| EGFP_C_primer | | 3404 - 3425 |  | EGFP_C_primer |  | catggtcctgctggagttcgtg
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| IRES | | 3551 - 4054 |  | IRES |  | cccccccccctaacgttactggccgaagccgcttggaataaggccggtgtgcgtttgtct atatgttattttccaccatattgccgtcttttggcaatgtgagggcccggaaacctggcc ctgtcttcttgacgagcattcctaggggtctttcccctctcgccaaaggaatgcaaggtc tgttgaatgtcgtgaaggaagcagttcctctggaagcttcttgaagacaaacaacgtctg tagcgaccctttgcaggcagcggaaccccccacctggcgacaggtgcctctgcggccaaa agccacgtgtataagatacacctgcaaaggcggcacaaccccagtgccacgttgtgagtt ggatagttgtggaaagagtcaaatggctctcctcaagcgtattcaacaaggggctgaagg atgcccagaaggtaccccattgtatgggatctgatctggggcctcggtgcacatgcttta catgtgtttagtcgaggttaaaaa
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| TetR | | 4132 - 4731 |  | TetR |  | aaaagtaaagtgattaacagcgcattagagctgcttaatgaggtcggaatcgaaggttta acaacccgtaaactcgcccagaagctaggtgtagagcagcctacattgtattggcatgta aaaaataagcgggctttgctcgacgccttagccattgagatgttagataggcaccatact cacttttgccctttagaaggggaaagctggcaagattttttacgtaataacgctaaaagt tttagatgtgctttactaagtcatcgcgatggagcaaaagtacatttaggtacacggcct acagaaaaacagtatgaaactctcgaaaatcaattagcctttttatgccaacaaggtttt tcactagagaatgcattatatgcactcagcgctgtggggcattttactttaggttgcgta ttggaagatcaagagcatcaagtcgctaaagaagaaagggaaacacctactactgatagt atgccgccattattacgacaagctatcgaattatttgatcaccaaggtgcagagccagcc ttcttattcggccttgaattgatcatatgcggattagaaaaacaacttaaatgtgaaagt
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| ORF frame 1 | | 4117 - 5124 |  | ORF frame 1 |  | atggctagattagataaaagtaaagtgattaacagcgcattagagctgcttaatgaggtc ggaatcgaaggtttaacaacccgtaaactcgcccagaagctaggtgtagagcagcctaca ttgtattggcatgtaaaaaataagcgggctttgctcgacgccttagccattgagatgtta gataggcaccatactcacttttgccctttagaaggggaaagctggcaagattttttacgt aataacgctaaaagttttagatgtgctttactaagtcatcgcgatggagcaaaagtacat ttaggtacacggcctacagaaaaacagtatgaaactctcgaaaatcaattagccttttta tgccaacaaggtttttcactagagaatgcattatatgcactcagcgctgtggggcatttt actttaggttgcgtattggaagatcaagagcatcaagtcgctaaagaagaaagggaaaca cctactactgatagtatgccgccattattacgacaagctatcgaattatttgatcaccaa ggtgcagagccagccttcttattcggccttgaattgatcatatgcggattagaaaaacaa cttaaatgtgaaagtgggtcgccaaaaaagaagagaaaggtcgacggcggtggtgctttg tctcctcagcactctgctgtcactcaaggaagtatcatcaagaacaaggagggcatggat gctaagtcactaactgcctggtcccggacactggtgaccttcaaggatgtatttgtggac ttcaccagggaggagtggaagctgctggacactgctcagcagatcgtgtacagaaatgtg atgctggagaactataagaacctggtttccttgggttatcagcttactaagccagatgtg atcctccggttggagaagggagaagagccctggctggtggagagagaaattcaccaagag acccatcctgattcagagactgcatttgaaatcaaatcatcagtttaa
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| pBluescriptKS_primer | | 5211 - 5195 |  | pBluescriptKS_primer |  | tcgaggtcgacggtatc
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| WPRE | | 5233 - 5820 |  | WPRE |  | tcaacctctggattacaaaatttgtgaaagattgactggtattcttaactatgttgctcc ttttacgctatgtggatacgctgctttaatgcctttgtatcatgctattgcttcccgtat ggctttcattttctcctccttgtataaatcctggttgctgtctctttatgaggagttgtg gcccgttgtcaggcaacgtggcgtggtgtgcactgtgtttgctgacgcaacccccactgg ttggggcattgccaccacctgtcagctcctttccgggactttcgctttccccctccctat tgccacggcggaactcatcgccgcctgccttgcccgctgctggacaggggctcggctgtt gggcactgacaattccgtggtgttgtcggggaagctgacgtcctttccatggctgctcgc ctgtgttgccacctggattctgcgcgggacgtccttctgctacgtcccttcggccctcaa tccagcggaccttccttcccgcggcctgctgccggctctgcggcctcttccgcgtcttcg ccttcgccctcagacgagtcggatctccctttgggccgcctccccgca
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| cPPT | | 5891 - 5906 |  | cPPT |  | aaaagaaaagggggga
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| U3PPT | | 5891 - 5912 |  | U3PPT |  | aaaagaaaaggggggactggaa
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| TRE | | 5943 - 6230 |  | TRE |  | ctcgagtttaccactccctatcagtgatagagaaaagtgaaagtcgagtttaccactccc tatcagtgatagagaaaagtgaaagtcgagtttaccactccctatcagtgatagagaaaa gtgaaagtcgagtttaccactccctatcagtgatagagaaaagtgaaagtcgagtttacc actccctatcagtgatagagaaaagtgaaagtcgagtttaccactccctatcagtgatag agaaaagtgaaagtcgagtttaccactccctatcagtgatagagaaaa
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| HIV-1_5_LTR | | 6266 - 6446 |  | HIV-1_5_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a
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| truncHIV-1_3_LTR | | 6266 - 6446 |  | truncHIV-1_3_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a
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| Sp6_primer | | 6489 - 6472 |  | Sp6_primer |  | atttaggtgacactatag
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| pBRrevBam_primer | | 6798 - 6779 |  | pBRrevBam_primer |  | ggtgatgtcggcgatatagg
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| tet(564-300) | | 6990 - 6727 |  | tet(564-300) |  | ctctcccttatgcgactcctgcattaggaagcagcccagtagtaggttgaggccgttgag caccgccgccgcaaggaatggtgcatgcaaggagatggcgcccaacagtcccccggccac ggggcctgccaccatacccacgccgaaacaagcgctcatgagcccgaagtggcgagcccg atcttccccatcggtgatgtcggcgatataggcgccagcaaccgcacctgtggcgccggt gatgccggccacgatgcgtccggc
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| pGEX_3_primer | | 7131 - 7153 |  | pGEX_3_primer |  | ccgggagctgcatgtgtcagagg
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| AmpR_promoter | | 7312 - 7340 |  | AmpR_promoter |  | ttcaaatatgtatccgctcatgagacaat
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| ORF frame 2 | | 7382 - 8242 |  | ORF frame 2 |  | atgagtattcaacatttccgtgtcgcccttattcccttttttgcggcattttgccttcct gtttttgctcacccagaaacgctggtgaaagtaaaagatgctgaagatcagttgggtgca cgagtgggttacatcgaactggatctcaacagcggtaagatccttgagagttttcgcccc gaagaacgttttccaatgatgagcacttttaaagttctgctatgtggcgcggtattatcc cgtattgacgccgggcaagagcaactcggtcgccgcatacactattctcagaatgacttg gttgagtactcaccagtcacagaaaagcatcttacggatggcatgacagtaagagaatta tgcagtgctgccataaccatgagtgataacactgcggccaacttacttctgacaacgatc ggaggaccgaaggagctaaccgcttttttgcacaacatgggggatcatgtaactcgcctt gatcgttgggaaccggagctgaatgaagccataccaaacgacgagcgtgacaccacgatg cctgtagcaatggcaacaacgttgcgcaaactattaactggcgaactacttactctagct tcccggcaacaattaatagactggatggaggcggataaagttgcaggaccacttctgcgc tcggcccttccggctggctggtttattgctgataaatctggagccggtgagcgtgggtct cgcggtatcattgcagcactggggccagatggtaagccctcccgtatcgtagttatctac acgacggggagtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcc tcactgattaagcattggtaa
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| Ampicillin | | 7382 - 8242 |  | Ampicillin |  | atgagtattcaacatttccgtgtcgcccttattcccttttttgcggcattttgccttcct gtttttgctcacccagaaacgctggtgaaagtaaaagatgctgaagatcagttgggtgca cgagtgggttacatcgaactggatctcaacagcggtaagatccttgagagttttcgcccc gaagaacgttttccaatgatgagcacttttaaagttctgctatgtggcgcggtattatcc cgtattgacgccgggcaagagcaactcggtcgccgcatacactattctcagaatgacttg gttgagtactcaccagtcacagaaaagcatcttacggatggcatgacagtaagagaatta tgcagtgctgccataaccatgagtgataacactgcggccaacttacttctgacaacgatc ggaggaccgaaggagctaaccgcttttttgcacaacatgggggatcatgtaactcgcctt gatcgttgggaaccggagctgaatgaagccataccaaacgacgagcgtgacaccacgatg cctgtagcaatggcaacaacgttgcgcaaactattaactggcgaactacttactctagct tcccggcaacaattaatagactggatggaggcggataaagttgcaggaccacttctgcgc tcggcccttccggctggctggtttattgctgataaatctggagccggtgagcgtgggtct cgcggtatcattgcagcactggggccagatggtaagccctcccgtatcgtagttatctac acgacggggagtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcc tcactgattaagcattggtaa
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| pBR322_origin | | 8397 - 9016 |  | pBR322_origin |  | agatcaaaggatcttcttgagatcctttttttctgcgcgtaatctgctgcttgcaaacaa aaaaaccaccgctaccagcggtggtttgtttgccggatcaagagctaccaactctttttc cgaaggtaactggcttcagcagagcgcagataccaaatactgtccttctagtgtagccgt agttaggccaccacttcaagaactctgtagcaccgcctacatacctcgctctgctaatcc tgttaccagtggctgctgccagtggcgataagtcgtgtcttaccgggttggactcaagac gatagttaccggataaggcgcagcggtcgggctgaacggggggttcgtgcacacagccca gcttggagcgaacgacctacaccgaactgagatacctacagcgtgagcattgagaaagcg ccacgcttcccgaagggagaaaggcggacaggtatccggtaagcggcagggtcggaacag gagagcgcacgagggagcttccagggggaaacgcctggtatctttatagtcctgtcgggt ttcgccacctctgacttgagcgtcgatttttgtgatgctcgtcaggggggcggagcctat ggaaaaacgccagcaacgcg
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| pBABE_3_primer | | 9262 - 9242 |  | pBABE_3_primer |  | accctaactgacacacattcc
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| SV40_enhancer | | 9463 - 9248 |  | SV40_enhancer |  | gagaatgggcggaactgggcggagttaggggcgggatgggcggagttaggggcgggacta tggttgctgactaattgagatgcatgctttgcatacttctgcctgctggggagcctgggg actttccacacctggttgctgactaattgagatgcatgctttgcatacttctgcctgctg gggagcctggggactttccacaccctaactgacaca
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| SV40_promoter | | 9260 - 9528 |  | SV40_promoter |  | ggtgtggaaagtccccaggctccccagcaggcagaagtatgcaaagcatgcatctcaatt agtcagcaaccaggtgtggaaagtccccaggctccccagcaggcagaagtatgcaaagca tgcatctcaattagtcagcaaccatagtcccgcccctaactccgcccatcccgcccctaa ctccgcccagttccgcccattctccgccccatggctgactaattttttttatttatgcag aggccgaggccgcctcggcctctgagcta
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| SV40_origin | | 9427 - 9504 |  | SV40_origin |  | atcccgcccctaactccgcccagttccgcccattctccgccccatggctgactaattttt tttatttatgcagaggcc
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| SV40_promoter | | 9380 - 9582 |  | SV40_promoter |  | tgcatctcaattagtcagcaaccatagtcccgcccctaactccgcccatcccgcccctaa ctccgcccagttccgcccattctccgccccatggctgactaattttttttatttatgcag aggccgaggccgcctcggcctctgagctattccagaagtagtgaggaggcttttttggag gcctaggcttttgcaaaaagctt
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| SV40pro_F_primer | | 9489 - 9508 |  | SV40pro_F_primer |  | tatttatgcagaggccgagg
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| SV40_int | | 10709 - 10724 |  | SV40_int |  | ggtaaatataaaattt
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| SV40_3_splice | | 10730 - 10777 |  | SV40_3_splice |  | tgtataatgtgttaaactactgattctaattgtttgtgtattttagat
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| SV40_PA_terminator | | 11353 - 11484 |  | SV40_PA_terminator |  | ttgtttattgcagcttataatggttacaaataaagcaatagcatcacaaatttcacaaat aaagcatttttttcactgcattctagttgtggtttgtccaaactcatcaatgtatcttat catgtctggatc
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| EBV_rev_primer | | 11441 - 11460 |  | EBV_rev_primer |  | gtggtttgtccaaactcatc
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