| Selected features |
| HIV-1_5_LTR | | 461 - 641 |  | HIV-1_5_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a
|
|
| truncHIV-1_3_LTR | | 461 - 641 |  | truncHIV-1_3_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a
|
|
| HIV-1_psi_pack | | 752 - 796 |  | HIV-1_psi_pack |  | tgagtacgccaaaaattttgactagcggaggctagaaggagagag
|
|
| RRE | | 1306 - 1539 |  | RRE |  | aggagctttgttccttgggttcttgggagcagcaggaagcactatgggcgcagcctcaat gacgctgacggtacaggccagacaattattgtctggtatagtgcagcagcagaacaattt gctgagggctattgaggcgcaacagcatctgttgcaactcacagtctggggcatcaagca gctccaggcaagaatcctggctgtggaaagatacctaaaggatcaacagctcct
|
|
| synth_int | | 2359 - 2634 |  | synth_int |  | tgtctgcgagggccagctgttggggtgagtactccctctcaaaagcgggcatgacttctg cgctaagattgtcagtttccaaaaacgaggaggatttgatattcacctggcccgcggtga tgcctttgagggtggccgcgtccatctggtcagaaaagacaatctttttgttgtcaagct tgaggtgtggcaggcttgagatctggccatacacttgagtgacaatgacatccactttgc ctttctctccacaggtgtccactcccaggtccaact
|
|
| EGFP_N_primer | | 2789 - 2768 |  | EGFP_N_primer |  | cgtcgccgtccagctcgaccag
|
|
| EGFP | | 2723 - 3439 |  | EGFP |  | atggtgagcaagggcgaggagctgttcaccggggtggtgcccatcctggtcgagctggac ggcgacgtaaacggccacaagttcagcgtgtccggcgagggcgagggcgatgccacctac ggcaagctgaccctgaagttcatctgcaccaccggcaagctgcccgtgccctggcccacc ctcgtgaccaccctgacctacggcgtgcagtgcttcagccgctaccccgaccacatgaag cagcacgacttcttcaagtccgccatgcccgaaggctacgtccaggagcgcaccatcttc ttcaaggacgacggcaactacaagacccgcgccgaggtgaagttcgagggcgacaccctg gtgaaccgcatcgagctgaagggcatcgacttcaaggaggacggcaacatcctggggcac aagctggagtacaactacaacagccacaacgtctatatcatggccgacaagcagaagaac ggcatcaaggtgaacttcaagatccgccacaacatcgaggacggcagcgtgcagctcgcc gaccactaccagcagaacacccccatcggcgacggccccgtgctgctgcccgacaaccac tacctgagcacccagtccgccctgagcaaagaccccaacgagaagcgcgatcacatggtc ctgctggagttcgtgaccgccgccgggatcactctcggcatggacgagctgtacaag
|
|
| ORF frame 2 | | 2723 - 3472 |  | ORF frame 2 |  | atggtgagcaagggcgaggagctgttcaccggggtggtgcccatcctggtcgagctggac ggcgacgtaaacggccacaagttcagcgtgtccggcgagggcgagggcgatgccacctac ggcaagctgaccctgaagttcatctgcaccaccggcaagctgcccgtgccctggcccacc ctcgtgaccaccctgacctacggcgtgcagtgcttcagccgctaccccgaccacatgaag cagcacgacttcttcaagtccgccatgcccgaaggctacgtccaggagcgcaccatcttc ttcaaggacgacggcaactacaagacccgcgccgaggtgaagttcgagggcgacaccctg gtgaaccgcatcgagctgaagggcatcgacttcaaggaggacggcaacatcctggggcac aagctggagtacaactacaacagccacaacgtctatatcatggccgacaagcagaagaac ggcatcaaggtgaacttcaagatccgccacaacatcgaggacggcagcgtgcagctcgcc gaccactaccagcagaacacccccatcggcgacggccccgtgctgctgcccgacaaccac tacctgagcacccagtccgccctgagcaaagaccccaacgagaagcgcgatcacatggtc ctgctggagttcgtgaccgccgccgggatcactctcggcatggacgagctgtacaagtcc ggactcagatctcgactagctagtagctag
|
|
| EGFP_C_primer | | 3376 - 3397 |  | EGFP_C_primer |  | catggtcctgctggagttcgtg
|
|
| IRES | | 3523 - 4026 |  | IRES |  | cccccccccctaacgttactggccgaagccgcttggaataaggccggtgtgcgtttgtct atatgttattttccaccatattgccgtcttttggcaatgtgagggcccggaaacctggcc ctgtcttcttgacgagcattcctaggggtctttcccctctcgccaaaggaatgcaaggtc tgttgaatgtcgtgaaggaagcagttcctctggaagcttcttgaagacaaacaacgtctg tagcgaccctttgcaggcagcggaaccccccacctggcgacaggtgcctctgcggccaaa agccacgtgtataagatacacctgcaaaggcggcacaaccccagtgccacgttgtgagtt ggatagttgtggaaagagtcaaatggctctcctcaagcgtattcaacaaggggctgaagg atgcccagaaggtaccccattgtatgggatctgatctggggcctcggtgcacatgcttta catgtgtttagtcgaggttaaaaa
|
|
| TetR | | 4104 - 4703 |  | TetR |  | aaaagtaaagtgattaacagcgcattagagctgcttaatgaggtcggaatcgaaggttta acaacccgtaaactcgcccagaagctaggtgtagagcagcctacattgtattggcatgta aaaaataagcgggctttgctcgacgccttagccattgagatgttagataggcaccatact cacttttgccctttagaaggggaaagctggcaagattttttacgtaataacgctaaaagt tttagatgtgctttactaagtcatcgcgatggagcaaaagtacatttaggtacacggcct acagaaaaacagtatgaaactctcgaaaatcaattagcctttttatgccaacaaggtttt tcactagagaatgcattatatgcactcagcgctgtggggcattttactttaggttgcgta ttggaagatcaagagcatcaagtcgctaaagaagaaagggaaacacctactactgatagt atgccgccattattacgacaagctatcgaattatttgatcaccaaggtgcagagccagcc ttcttattcggccttgaattgatcatatgcggattagaaaaacaacttaaatgtgaaagt
|
|
| ORF frame 3 | | 4089 - 5096 |  | ORF frame 3 |  | atggctagattagataaaagtaaagtgattaacagcgcattagagctgcttaatgaggtc ggaatcgaaggtttaacaacccgtaaactcgcccagaagctaggtgtagagcagcctaca ttgtattggcatgtaaaaaataagcgggctttgctcgacgccttagccattgagatgtta gataggcaccatactcacttttgccctttagaaggggaaagctggcaagattttttacgt aataacgctaaaagttttagatgtgctttactaagtcatcgcgatggagcaaaagtacat ttaggtacacggcctacagaaaaacagtatgaaactctcgaaaatcaattagccttttta tgccaacaaggtttttcactagagaatgcattatatgcactcagcgctgtggggcatttt actttaggttgcgtattggaagatcaagagcatcaagtcgctaaagaagaaagggaaaca cctactactgatagtatgccgccattattacgacaagctatcgaattatttgatcaccaa ggtgcagagccagccttcttattcggccttgaattgatcatatgcggattagaaaaacaa cttaaatgtgaaagtgggtcgccaaaaaagaagagaaaggtcgacggcggtggtgctttg tctcctcagcactctgctgtcactcaaggaagtatcatcaagaacaaggagggcatggat gctaagtcactaactgcctggtcccggacactggtgaccttcaaggatgtatttgtggac ttcaccagggaggagtggaagctgctggacactgctcagcagatcgtgtacagaaatgtg atgctggagaactataagaacctggtttccttgggttatcagcttactaagccagatgtg atcctccggttggagaagggagaagagccctggctggtggagagagaaattcaccaagag acccatcctgattcagagactgcatttgaaatcaaatcatcagtttaa
|
|
| WPRE | | 5171 - 5758 |  | WPRE |  | tcaacctctggattacaaaatttgtgaaagattgactggtattcttaactatgttgctcc ttttacgctatgtggatacgctgctttaatgcctttgtatcatgctattgcttcccgtat ggctttcattttctcctccttgtataaatcctggttgctgtctctttatgaggagttgtg gcccgttgtcaggcaacgtggcgtggtgtgcactgtgtttgctgacgcaacccccactgg ttggggcattgccaccacctgtcagctcctttccgggactttcgctttccccctccctat tgccacggcggaactcatcgccgcctgccttgcccgctgctggacaggggctcggctgtt gggcactgacaattccgtggtgttgtcggggaagctgacgtcctttccatggctgctcgc ctgtgttgccacctggattctgcgcgggacgtccttctgctacgtcccttcggccctcaa tccagcggaccttccttcccgcggcctgctgccggctctgcggcctcttccgcgtcttcg ccttcgccctcagacgagtcggatctccctttgggccgcctccccgca
|
|
| cPPT | | 5829 - 5844 |  | cPPT |  | aaaagaaaagggggga
|
|
| U3PPT | | 5829 - 5850 |  | U3PPT |  | aaaagaaaaggggggactggaa
|
|
| TRE | | 5881 - 6168 |  | TRE |  | ctcgagtttaccactccctatcagtgatagagaaaagtgaaagtcgagtttaccactccc tatcagtgatagagaaaagtgaaagtcgagtttaccactccctatcagtgatagagaaaa gtgaaagtcgagtttaccactccctatcagtgatagagaaaagtgaaagtcgagtttacc actccctatcagtgatagagaaaagtgaaagtcgagtttaccactccctatcagtgatag agaaaagtgaaagtcgagtttaccactccctatcagtgatagagaaaa
|
|
| HIV-1_5_LTR | | 6204 - 6384 |  | HIV-1_5_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a
|
|
| truncHIV-1_3_LTR | | 6204 - 6384 |  | truncHIV-1_3_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a
|
|
| Sp6_primer | | 6427 - 6410 |  | Sp6_primer |  | atttaggtgacactatag
|
|
| pBRrevBam_primer | | 6736 - 6717 |  | pBRrevBam_primer |  | ggtgatgtcggcgatatagg
|
|
| tet(564-300) | | 6928 - 6665 |  | tet(564-300) |  | ctctcccttatgcgactcctgcattaggaagcagcccagtagtaggttgaggccgttgag caccgccgccgcaaggaatggtgcatgcaaggagatggcgcccaacagtcccccggccac ggggcctgccaccatacccacgccgaaacaagcgctcatgagcccgaagtggcgagcccg atcttccccatcggtgatgtcggcgatataggcgccagcaaccgcacctgtggcgccggt gatgccggccacgatgcgtccggc
|
|
| pGEX_3_primer | | 7069 - 7091 |  | pGEX_3_primer |  | ccgggagctgcatgtgtcagagg
|
|
| AmpR_promoter | | 7250 - 7278 |  | AmpR_promoter |  | ttcaaatatgtatccgctcatgagacaat
|
|
| ORF frame 3 | | 7320 - 8180 |  | ORF frame 3 |  | atgagtattcaacatttccgtgtcgcccttattcccttttttgcggcattttgccttcct gtttttgctcacccagaaacgctggtgaaagtaaaagatgctgaagatcagttgggtgca cgagtgggttacatcgaactggatctcaacagcggtaagatccttgagagttttcgcccc gaagaacgttttccaatgatgagcacttttaaagttctgctatgtggcgcggtattatcc cgtattgacgccgggcaagagcaactcggtcgccgcatacactattctcagaatgacttg gttgagtactcaccagtcacagaaaagcatcttacggatggcatgacagtaagagaatta tgcagtgctgccataaccatgagtgataacactgcggccaacttacttctgacaacgatc ggaggaccgaaggagctaaccgcttttttgcacaacatgggggatcatgtaactcgcctt gatcgttgggaaccggagctgaatgaagccataccaaacgacgagcgtgacaccacgatg cctgtagcaatggcaacaacgttgcgcaaactattaactggcgaactacttactctagct tcccggcaacaattaatagactggatggaggcggataaagttgcaggaccacttctgcgc tcggcccttccggctggctggtttattgctgataaatctggagccggtgagcgtgggtct cgcggtatcattgcagcactggggccagatggtaagccctcccgtatcgtagttatctac acgacggggagtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcc tcactgattaagcattggtaa
|
|
| Ampicillin | | 7320 - 8180 |  | Ampicillin |  | atgagtattcaacatttccgtgtcgcccttattcccttttttgcggcattttgccttcct gtttttgctcacccagaaacgctggtgaaagtaaaagatgctgaagatcagttgggtgca cgagtgggttacatcgaactggatctcaacagcggtaagatccttgagagttttcgcccc gaagaacgttttccaatgatgagcacttttaaagttctgctatgtggcgcggtattatcc cgtattgacgccgggcaagagcaactcggtcgccgcatacactattctcagaatgacttg gttgagtactcaccagtcacagaaaagcatcttacggatggcatgacagtaagagaatta tgcagtgctgccataaccatgagtgataacactgcggccaacttacttctgacaacgatc ggaggaccgaaggagctaaccgcttttttgcacaacatgggggatcatgtaactcgcctt gatcgttgggaaccggagctgaatgaagccataccaaacgacgagcgtgacaccacgatg cctgtagcaatggcaacaacgttgcgcaaactattaactggcgaactacttactctagct tcccggcaacaattaatagactggatggaggcggataaagttgcaggaccacttctgcgc tcggcccttccggctggctggtttattgctgataaatctggagccggtgagcgtgggtct cgcggtatcattgcagcactggggccagatggtaagccctcccgtatcgtagttatctac acgacggggagtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcc tcactgattaagcattggtaa
|
|
| pBR322_origin | | 8335 - 8954 |  | pBR322_origin |  | agatcaaaggatcttcttgagatcctttttttctgcgcgtaatctgctgcttgcaaacaa aaaaaccaccgctaccagcggtggtttgtttgccggatcaagagctaccaactctttttc cgaaggtaactggcttcagcagagcgcagataccaaatactgtccttctagtgtagccgt agttaggccaccacttcaagaactctgtagcaccgcctacatacctcgctctgctaatcc tgttaccagtggctgctgccagtggcgataagtcgtgtcttaccgggttggactcaagac gatagttaccggataaggcgcagcggtcgggctgaacggggggttcgtgcacacagccca gcttggagcgaacgacctacaccgaactgagatacctacagcgtgagcattgagaaagcg ccacgcttcccgaagggagaaaggcggacaggtatccggtaagcggcagggtcggaacag gagagcgcacgagggagcttccagggggaaacgcctggtatctttatagtcctgtcgggt ttcgccacctctgacttgagcgtcgatttttgtgatgctcgtcaggggggcggagcctat ggaaaaacgccagcaacgcg
|
|
| pBABE_3_primer | | 9200 - 9180 |  | pBABE_3_primer |  | accctaactgacacacattcc
|
|
| SV40_enhancer | | 9401 - 9186 |  | SV40_enhancer |  | gagaatgggcggaactgggcggagttaggggcgggatgggcggagttaggggcgggacta tggttgctgactaattgagatgcatgctttgcatacttctgcctgctggggagcctgggg actttccacacctggttgctgactaattgagatgcatgctttgcatacttctgcctgctg gggagcctggggactttccacaccctaactgacaca
|
|
| SV40_promoter | | 9198 - 9466 |  | SV40_promoter |  | ggtgtggaaagtccccaggctccccagcaggcagaagtatgcaaagcatgcatctcaatt agtcagcaaccaggtgtggaaagtccccaggctccccagcaggcagaagtatgcaaagca tgcatctcaattagtcagcaaccatagtcccgcccctaactccgcccatcccgcccctaa ctccgcccagttccgcccattctccgccccatggctgactaattttttttatttatgcag aggccgaggccgcctcggcctctgagcta
|
|
| SV40_origin | | 9365 - 9442 |  | SV40_origin |  | atcccgcccctaactccgcccagttccgcccattctccgccccatggctgactaattttt tttatttatgcagaggcc
|
|
| SV40_promoter | | 9318 - 9520 |  | SV40_promoter |  | tgcatctcaattagtcagcaaccatagtcccgcccctaactccgcccatcccgcccctaa ctccgcccagttccgcccattctccgccccatggctgactaattttttttatttatgcag aggccgaggccgcctcggcctctgagctattccagaagtagtgaggaggcttttttggag gcctaggcttttgcaaaaagctt
|
|
| SV40pro_F_primer | | 9427 - 9446 |  | SV40pro_F_primer |  | tatttatgcagaggccgagg
|
|
| SV40_int | | 10647 - 10662 |  | SV40_int |  | ggtaaatataaaattt
|
|
| SV40_3_splice | | 10668 - 10715 |  | SV40_3_splice |  | tgtataatgtgttaaactactgattctaattgtttgtgtattttagat
|
|
| SV40_PA_terminator | | 11291 - 11422 |  | SV40_PA_terminator |  | ttgtttattgcagcttataatggttacaaataaagcaatagcatcacaaatttcacaaat aaagcatttttttcactgcattctagttgtggtttgtccaaactcatcaatgtatcttat catgtctggatc
|
|
| EBV_rev_primer | | 11379 - 11398 |  | EBV_rev_primer |  | gtggtttgtccaaactcatc
|
|