| Selected features |
| HIV-1_5_LTR | | 455 - 635 |  | HIV-1_5_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a
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| truncHIV-1_3_LTR | | 455 - 635 |  | truncHIV-1_3_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a
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| HIV-1_psi_pack | | 746 - 790 |  | HIV-1_psi_pack |  | tgagtacgccaaaaattttgactagcggaggctagaaggagagag
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| RRE | | 1300 - 1533 |  | RRE |  | aggagctttgttccttgggttcttgggagcagcaggaagcactatgggcgcagcctcaat gacgctgacggtacaggccagacaattattgtctggtatagtgcagcagcagaacaattt gctgagggctattgaggcgcaacagcatctgttgcaactcacagtctggggcatcaagca gctccaggcaagaatcctggctgtggaaagatacctaaaggatcaacagctcct
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| ORF frame 1 | | 1639 - 2301 |  | ORF frame 1 |  | atggagtgggacagagaaattaacaattacacaagcttaatacactccttaattgaagaa tcgcaaaaccagcaagaaaagaatgaacaagaattattggaattagataaatgggcaagt ttgtggaattggtttaacataacaaattggctgtggtatataaaattattcataatgata gtaggaggcttggtaggtttaagaatagtttttgctgtactttctatagtgaatagagtt aggcagggatattcaccattatcgtttcagacccacctcccaaccccgaggggacccgac aggcccgaaggaatagaagaagaaggtggagagagagacagagacagatccattcgatta gtgaacggatctcgacggtatcggttaacttttaaaagaaaaggggggattggggggtac agtgcaggggaaagaatagtagacataatagcaacagacatacaaactaaagaattacaa aaacaaattacaaaaattcaaaattttatcgatcacgagactagcctcgacgatggtcga gtaccgggtaggggaggcgcttttcccaaggcagtctggagcatgcgctttagcagcccc gctgggcacttggcgctacacaagtggcctctggcctcgcacacattccacatccaccgg tag
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| cPPT | | 2032 - 2047 |  | cPPT |  | aaaagaaaagggggga
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| MSCV_rev_primer | | 2242 - 2219 |  | MSCV_rev_primer |  | cagcggggctgctaaagcgcatgc
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| mPGK_F_primer | | 2616 - 2635 |  | mPGK_F_primer |  | cattctgcacgcttcaaaag
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| EGFP_N_primer | | 2806 - 2785 |  | EGFP_N_primer |  | cgtcgccgtccagctcgaccag
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| EGFP | | 2740 - 3456 |  | EGFP |  | atggtgagcaagggcgaggagctgttcaccggggtggtgcccatcctggtcgagctggac ggcgacgtaaacggccacaagttcagcgtgtccggcgagggcgagggcgatgccacctac ggcaagctgaccctgaagttcatctgcaccaccggcaagctgcccgtgccctggcccacc ctcgtgaccaccctgacctacggcgtgcagtgcttcagccgctaccccgaccacatgaag cagcacgacttcttcaagtccgccatgcccgaaggctacgtccaggagcgcaccatcttc ttcaaggacgacggcaactacaagacccgcgccgaggtgaagttcgagggcgacaccctg gtgaaccgcatcgagctgaagggcatcgacttcaaggaggacggcaacatcctggggcac aagctggagtacaactacaacagccacaacgtctatatcatggccgacaagcagaagaac ggcatcaaggtgaacttcaagatccgccacaacatcgaggacggcagcgtgcagctcgcc gaccactaccagcagaacacccccatcggcgacggccccgtgctgctgcccgacaaccac tacctgagcacccagtccgccctgagcaaagaccccaacgagaagcgcgatcacatggtc ctgctggagttcgtgaccgccgccgggatcactctcggcatggacgagctgtacaag
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| ORF frame 1 | | 2740 - 3477 |  | ORF frame 1 |  | atggtgagcaagggcgaggagctgttcaccggggtggtgcccatcctggtcgagctggac ggcgacgtaaacggccacaagttcagcgtgtccggcgagggcgagggcgatgccacctac ggcaagctgaccctgaagttcatctgcaccaccggcaagctgcccgtgccctggcccacc ctcgtgaccaccctgacctacggcgtgcagtgcttcagccgctaccccgaccacatgaag cagcacgacttcttcaagtccgccatgcccgaaggctacgtccaggagcgcaccatcttc ttcaaggacgacggcaactacaagacccgcgccgaggtgaagttcgagggcgacaccctg gtgaaccgcatcgagctgaagggcatcgacttcaaggaggacggcaacatcctggggcac aagctggagtacaactacaacagccacaacgtctatatcatggccgacaagcagaagaac ggcatcaaggtgaacttcaagatccgccacaacatcgaggacggcagcgtgcagctcgcc gaccactaccagcagaacacccccatcggcgacggccccgtgctgctgcccgacaaccac tacctgagcacccagtccgccctgagcaaagaccccaacgagaagcgcgatcacatggtc ctgctggagttcgtgaccgccgccgggatcactctcggcatggacgagctgtacaagtcc ggactcagatctcgatag
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| EGFP_C_primer | | 3393 - 3414 |  | EGFP_C_primer |  | catggtcctgctggagttcgtg
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| IRES | | 3538 - 4041 |  | IRES |  | cccccccccctaacgttactggccgaagccgcttggaataaggccggtgtgcgtttgtct atatgttattttccaccatattgccgtcttttggcaatgtgagggcccggaaacctggcc ctgtcttcttgacgagcattcctaggggtctttcccctctcgccaaaggaatgcaaggtc tgttgaatgtcgtgaaggaagcagttcctctggaagcttcttgaagacaaacaacgtctg tagcgaccctttgcaggcagcggaaccccccacctggcgacaggtgcctctgcggccaaa agccacgtgtataagatacacctgcaaaggcggcacaaccccagtgccacgttgtgagtt ggatagttgtggaaagagtcaaatggctctcctcaagcgtattcaacaaggggctgaagg atgcccagaaggtaccccattgtatgggatctgatctggggcctcggtgcacatgcttta catgtgtttagtcgaggttaaaaa
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| TetR | | 4119 - 4718 |  | TetR |  | aaaagtaaagtgattaacagcgcattagagctgcttaatgaggtcggaatcgaaggttta acaacccgtaaactcgcccagaagcttggtgtagagcagcctacactgtattggcatgta aaaaataagcgggctttgctcgacgccttagccattgagatgttagataggcaccatact cacttttgccctttaaaaggggaaagctggcaagattttttacgcaataacgctaaaagt tttagatgtgctttactaagtcatcgcaatggagcaaaagtacattcagatacacggcct acagaaaaacagtatgaaactctcgaaaatcaattagcctttttatgccaacaaggtttt tcactagagaacgcgttatatgcactcagcgctgtggggcattttactttaggttgcgta ttggaagatcaagagcatcaagtcgctaaagaagaaagggaaacacctactactgatagt atgccgccattattacgacaagctatcgaattatttgatcaccaaggtgcagagccagcc ttcttattcggccttgaattgatcatatgcggattagaaaaacaacttaaatgtgaaagt
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| ORF frame 3 | | 4104 - 5111 |  | ORF frame 3 |  | atggctagattagataaaagtaaagtgattaacagcgcattagagctgcttaatgaggtc ggaatcgaaggtttaacaacccgtaaactcgcccagaagcttggtgtagagcagcctaca ctgtattggcatgtaaaaaataagcgggctttgctcgacgccttagccattgagatgtta gataggcaccatactcacttttgccctttaaaaggggaaagctggcaagattttttacgc aataacgctaaaagttttagatgtgctttactaagtcatcgcaatggagcaaaagtacat tcagatacacggcctacagaaaaacagtatgaaactctcgaaaatcaattagccttttta tgccaacaaggtttttcactagagaacgcgttatatgcactcagcgctgtggggcatttt actttaggttgcgtattggaagatcaagagcatcaagtcgctaaagaagaaagggaaaca cctactactgatagtatgccgccattattacgacaagctatcgaattatttgatcaccaa ggtgcagagccagccttcttattcggccttgaattgatcatatgcggattagaaaaacaa cttaaatgtgaaagtgggtcgccaaaaaagaagagaaaggtcgacggcggtggtgctttg tctcctcagcactctgctgtcactcaaggaagtatcatcaagaacaaggagggcatggat gctaagtcactaactgcctggtcccggacactggtgaccttcaaggatgtatttgtggac ttcaccagggaggagtggaagctgctggacactgctcagcagatcgtgtacagaaatgtg atgctggagaactataagaacctggtttccttgggttatcagcttactaagccagatgtg atcctccggttggagaagggagaagagccctggctggtggagagagaaattcaccaagag acccatcctgattcagagactgcatttgaaatcaaatcatcagtttaa
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| pBluescriptKS_primer | | 5197 - 5181 |  | pBluescriptKS_primer |  | tcgaggtcgacggtatc
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| WPRE | | 5213 - 5800 |  | WPRE |  | tcaacctctggattacaaaatttgtgaaagattgactggtattcttaactatgttgctcc ttttacgctatgtggatacgctgctttaatgcctttgtatcatgctattgcttcccgtat ggctttcattttctcctccttgtataaatcctggttgctgtctctttatgaggagttgtg gcccgttgtcaggcaacgtggcgtggtgtgcactgtgtttgctgacgcaacccccactgg ttggggcattgccaccacctgtcagctcctttccgggactttcgctttccccctccctat tgccacggcggaactcatcgccgcctgccttgcccgctgctggacaggggctcggctgtt gggcactgacaattccgtggtgttgtcggggaagctgacgtcctttccatggctgctcgc ctgtgttgccacctggattctgcgcgggacgtccttctgctacgtcccttcggccctcaa tccagcggaccttccttcccgcggcctgctgccggctctgcggcctcttccgcgtcttcg ccttcgccctcagacgagtcggatctccctttgggccgcctccccgca
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| cPPT | | 5871 - 5886 |  | cPPT |  | aaaagaaaagggggga
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| U3PPT | | 5871 - 5892 |  | U3PPT |  | aaaagaaaaggggggactggaa
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| TRE | | 5923 - 6210 |  | TRE |  | ctcgagtttaccactccctatcagtgatagagaaaagtgaaagtcgagtttaccactccc tatcagtgatagagaaaagtgaaagtcgagtttaccactccctatcagtgatagagaaaa gtgaaagtcgagtttaccactccctatcagtgatagagaaaagtgaaagtcgagtttacc actccctatcagtgatagagaaaagtgaaagtcgagtttaccactccctatcagtgatag agaaaagtgaaagtcgagtttaccactccctatcagtgatagagaaaa
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| HIV-1_5_LTR | | 6242 - 6422 |  | HIV-1_5_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a
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| truncHIV-1_3_LTR | | 6242 - 6422 |  | truncHIV-1_3_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a
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| Sp6_primer | | 6465 - 6448 |  | Sp6_primer |  | atttaggtgacactatag
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| pBRrevBam_primer | | 6774 - 6755 |  | pBRrevBam_primer |  | ggtgatgtcggcgatatagg
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| tet(564-300) | | 6966 - 6703 |  | tet(564-300) |  | ctctcccttatgcgactcctgcattaggaagcagcccagtagtaggttgaggccgttgag caccgccgccgcaaggaatggtgcatgcaaggagatggcgcccaacagtcccccggccac ggggcctgccaccatacccacgccgaaacaagcgctcatgagcccgaagtggcgagcccg atcttccccatcggtgatgtcggcgatataggcgccagcaaccgcacctgtggcgccggt gatgccggccacgatgcgtccggc
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| pGEX_3_primer | | 7107 - 7129 |  | pGEX_3_primer |  | ccgggagctgcatgtgtcagagg
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| AmpR_promoter | | 7288 - 7316 |  | AmpR_promoter |  | ttcaaatatgtatccgctcatgagacaat
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| ORF frame 2 | | 7358 - 8218 |  | ORF frame 2 |  | atgagtattcaacatttccgtgtcgcccttattcccttttttgcggcattttgccttcct gtttttgctcacccagaaacgctggtgaaagtaaaagatgctgaagatcagttgggtgca cgagtgggttacatcgaactggatctcaacagcggtaagatccttgagagttttcgcccc gaagaacgttttccaatgatgagcacttttaaagttctgctatgtggcgcggtattatcc cgtattgacgccgggcaagagcaactcggtcgccgcatacactattctcagaatgacttg gttgagtactcaccagtcacagaaaagcatcttacggatggcatgacagtaagagaatta tgcagtgctgccataaccatgagtgataacactgcggccaacttacttctgacaacgatc ggaggaccgaaggagctaaccgcttttttgcacaacatgggggatcatgtaactcgcctt gatcgttgggaaccggagctgaatgaagccataccaaacgacgagcgtgacaccacgatg cctgtagcaatggcaacaacgttgcgcaaactattaactggcgaactacttactctagct tcccggcaacaattaatagactggatggaggcggataaagttgcaggaccacttctgcgc tcggcccttccggctggctggtttattgctgataaatctggagccggtgagcgtgggtct cgcggtatcattgcagcactggggccagatggtaagccctcccgtatcgtagttatctac acgacggggagtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcc tcactgattaagcattggtaa
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| Ampicillin | | 7358 - 8218 |  | Ampicillin |  | atgagtattcaacatttccgtgtcgcccttattcccttttttgcggcattttgccttcct gtttttgctcacccagaaacgctggtgaaagtaaaagatgctgaagatcagttgggtgca cgagtgggttacatcgaactggatctcaacagcggtaagatccttgagagttttcgcccc gaagaacgttttccaatgatgagcacttttaaagttctgctatgtggcgcggtattatcc cgtattgacgccgggcaagagcaactcggtcgccgcatacactattctcagaatgacttg gttgagtactcaccagtcacagaaaagcatcttacggatggcatgacagtaagagaatta tgcagtgctgccataaccatgagtgataacactgcggccaacttacttctgacaacgatc ggaggaccgaaggagctaaccgcttttttgcacaacatgggggatcatgtaactcgcctt gatcgttgggaaccggagctgaatgaagccataccaaacgacgagcgtgacaccacgatg cctgtagcaatggcaacaacgttgcgcaaactattaactggcgaactacttactctagct tcccggcaacaattaatagactggatggaggcggataaagttgcaggaccacttctgcgc tcggcccttccggctggctggtttattgctgataaatctggagccggtgagcgtgggtct cgcggtatcattgcagcactggggccagatggtaagccctcccgtatcgtagttatctac acgacggggagtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcc tcactgattaagcattggtaa
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| pBR322_origin | | 8373 - 8992 |  | pBR322_origin |  | agatcaaaggatcttcttgagatcctttttttctgcgcgtaatctgctgcttgcaaacaa aaaaaccaccgctaccagcggtggtttgtttgccggatcaagagctaccaactctttttc cgaaggtaactggcttcagcagagcgcagataccaaatactgtccttctagtgtagccgt agttaggccaccacttcaagaactctgtagcaccgcctacatacctcgctctgctaatcc tgttaccagtggctgctgccagtggcgataagtcgtgtcttaccgggttggactcaagac gatagttaccggataaggcgcagcggtcgggctgaacggggggttcgtgcacacagccca gcttggagcgaacgacctacaccgaactgagatacctacagcgtgagcattgagaaagcg ccacgcttcccgaagggagaaaggcggacaggtatccggtaagcggcagggtcggaacag gagagcgcacgagggagcttccagggggaaacgcctggtatctttatagtcctgtcgggt ttcgccacctctgacttgagcgtcgatttttgtgatgctcgtcaggggggcggagcctat ggaaaaacgccagcaacgcg
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| pBABE_3_primer | | 9238 - 9218 |  | pBABE_3_primer |  | accctaactgacacacattcc
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| SV40_enhancer | | 9439 - 9224 |  | SV40_enhancer |  | gagaatgggcggaactgggcggagttaggggcgggatgggcggagttaggggcgggacta tggttgctgactaattgagatgcatgctttgcatacttctgcctgctggggagcctgggg actttccacacctggttgctgactaattgagatgcatgctttgcatacttctgcctgctg gggagcctggggactttccacaccctaactgacaca
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| SV40_promoter | | 9236 - 9504 |  | SV40_promoter |  | ggtgtggaaagtccccaggctccccagcaggcagaagtatgcaaagcatgcatctcaatt agtcagcaaccaggtgtggaaagtccccaggctccccagcaggcagaagtatgcaaagca tgcatctcaattagtcagcaaccatagtcccgcccctaactccgcccatcccgcccctaa ctccgcccagttccgcccattctccgccccatggctgactaattttttttatttatgcag aggccgaggccgcctcggcctctgagcta
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| SV40_origin | | 9403 - 9480 |  | SV40_origin |  | atcccgcccctaactccgcccagttccgcccattctccgccccatggctgactaattttt tttatttatgcagaggcc
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| SV40_promoter | | 9356 - 9558 |  | SV40_promoter |  | tgcatctcaattagtcagcaaccatagtcccgcccctaactccgcccatcccgcccctaa ctccgcccagttccgcccattctccgccccatggctgactaattttttttatttatgcag aggccgaggccgcctcggcctctgagctattccagaagtagtgaggaggcttttttggag gcctaggcttttgcaaaaagctt
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| SV40pro_F_primer | | 9465 - 9484 |  | SV40pro_F_primer |  | tatttatgcagaggccgagg
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| SV40_int | | 10685 - 10700 |  | SV40_int |  | ggtaaatataaaattt
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| SV40_3_splice | | 10706 - 10753 |  | SV40_3_splice |  | tgtataatgtgttaaactactgattctaattgtttgtgtattttagat
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| SV40_PA_terminator | | 11329 - 11460 |  | SV40_PA_terminator |  | ttgtttattgcagcttataatggttacaaataaagcaatagcatcacaaatttcacaaat aaagcatttttttcactgcattctagttgtggtttgtccaaactcatcaatgtatcttat catgtctggatc
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| EBV_rev_primer | | 11417 - 11436 |  | EBV_rev_primer |  | gtggtttgtccaaactcatc
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