| Selected features |
| HIV-1_5_LTR | | 459 - 639 |  | HIV-1_5_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a
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| truncHIV-1_3_LTR | | 459 - 639 |  | truncHIV-1_3_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a
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| HIV-1_psi_pack | | 750 - 794 |  | HIV-1_psi_pack |  | tgagtacgccaaaaattttgactagcggaggctagaaggagagag
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| RRE | | 1304 - 1537 |  | RRE |  | aggagctttgttccttgggttcttgggagcagcaggaagcactatgggcgcagcgtcaat gacgctgacggtacaggccagacaattattgtctggtatagtgcagcagcagaacaattt gctgagggctattgaggcgcaacagcatctgttgcaactcacagtctggggcatcaagca gctccaggcaagaatcctggctgtggaaagatacctaaaggatcaacagctcct
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| ORF frame 3 | | 1182 - 2039 |  | ORF frame 3 |  | atgagggacaattggagaagtgaattatataaatataaagtagtaaaaattgaaccatta ggagtagcacccaccaaggcaaagagaagagtggtgcagagagaaaaaagagcagtggga ataggagctttgttccttgggttcttgggagcagcaggaagcactatgggcgcagcgtca atgacgctgacggtacaggccagacaattattgtctggtatagtgcagcagcagaacaat ttgctgagggctattgaggcgcaacagcatctgttgcaactcacagtctggggcatcaag cagctccaggcaagaatcctggctgtggaaagatacctaaaggatcaacagctcctgggg atttggggttgctctggaaaactcatttgcaccactgctgtgccttggaatgctagttgg agtaataaatctctggaacagatttggaatcacacgacctggatggagtgggacagagaa attaacaattacacaagcttaatacactccttaattgaagaatcgcaaaaccagcaagaa aagaatgaacaagaattattggaattagataaatgggcaagtttgtggaattggtttaac ataacaaattggctgtggtatataaaattattcataatgatagtaggaggcttggtaggt ttaagaatagtttttgctgtactttctatagtgaatagagttaggcagggatattcacca ttatcgtttcagacccacctcccaaccccgaggggacccgacaggcccgaaggaatagaa gaagaaggtggagagagagacagagacagatccattcgattagtgaacggatctcgacgg tatcgatcacgagactag
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| CAG_enhancer | | 2141 - 2428 |  | CAG_enhancer |  | acataacttacggtaaatggcccgcctggctgaccgcccaacgacccccgcccattgacg tcaataatgacgtatgttcccatagtaacgccaatagggactttccattgacgtcaatgg gtggagtatttacggtaaactgcccacttggcagtacatcaagtgtatcatatgccaagt acgccccctattgacgtcaatgacggtaaatggcccgcctggcattatgcccagtacatg accttatgggactttcctacttggcagtacatctacgtattagtcatc
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| ORF frame 3 | | 3707 - 2796 |  | ORF frame 3 |  | atgaacatggttagcagaggctctagagccgccggtcacacgccagaagccgaaccccgc cctgccccgtcccccccgaaggcagccgtccccccgcggacagccccgaggctggagagg gagaaggggacggcggcgcggcgacgcacgaaggccctccccgcccatttccttcctgcc ggcgccgcaccgcttcgccccgcgcccgctagagggggtgcggcggcgcctcccagattt cggctccgccagatttgggacaaaggaagtccctgcgccctctcgcacgattaccataaa aggcaatggctgcggctcgccgcgcctcgacagccgccggcgctccggggccgccgcgcc cctcccccgagccctccccggcccgaggcggccccgccccgcccggcacccccacctgcc gccaccccccgcccggcacggcgagccccgcgccacgccccgcacggagccccgcacccg aagccgggccgtgctcagcaactcggggaggggggtgcaggggggggttacagcccgacc gccgcgcccacaccccctgctcacccccccacgcacacaccccgcacgcagcctttgttc ccctcgcagcccccccgcaccgcggggcaccgcccccggccgcgctcccctcgcgcacac gcggagcgcacaaagccccgcgccgcgcccgcagcgctcacagccgccgggcagcgcggg ccgcacgcggcgctccccacgcacacacacacgcacgcaccccccgagccgctccccccc gcacaaagggccctcccggagccctttaaggctttcacgcagccacagaaaagaaacgag ccgtcattaaaccaagcgctaattacagcccggaggagaagggccgtcccgcccgctcac ctgtgggagtaa
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| pCAG_F_primer | | 3736 - 3755 |  | pCAG_F_primer |  | gcaacgtgctggttattgtg
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| cPPT | | 3818 - 3833 |  | cPPT |  | aaaagaaaagggggga
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| EGFP_N_primer | | 4081 - 4060 |  | EGFP_N_primer |  | cgtcgccgtccagctcgaccag
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| EGFP | | 4015 - 4731 |  | EGFP |  | atggtgagcaagggcgaggagctgttcaccggggtggtgcccatcctggtcgagctggac ggcgacgtaaacggccacaagttcagcgtgtccggcgagggcgagggcgatgccacctac ggcaagctgaccctgaagttcatctgcaccaccggcaagctgcccgtgccctggcccacc ctcgtgaccaccctgacctacggcgtgcagtgcttcagccgctaccccgaccacatgaag cagcacgacttcttcaagtccgccatgcccgaaggctacgtccaggagcgcaccatcttc ttcaaggacgacggcaactacaagacccgcgccgaggtgaagttcgagggcgacaccctg gtgaaccgcatcgagctgaagggcatcgacttcaaggaggacggcaacatcctggggcac aagctggagtacaactacaacagccacaacgtctatatcatggccgacaagcagaagaac ggcatcaaggtgaacttcaagatccgccacaacatcgaggacggcagcgtgcagctcgcc gaccactaccagcagaacacccccatcggcgacggccccgtgctgctgcccgacaaccac tacctgagcacccagtccgccctgagcaaagaccccaacgagaagcgcgatcacatggtc ctgctggagttcgtgaccgccgccgggatcactctcggcatggacgagctgtacaag
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| ORF frame 1 | | 4015 - 4764 |  | ORF frame 1 |  | atggtgagcaagggcgaggagctgttcaccggggtggtgcccatcctggtcgagctggac ggcgacgtaaacggccacaagttcagcgtgtccggcgagggcgagggcgatgccacctac ggcaagctgaccctgaagttcatctgcaccaccggcaagctgcccgtgccctggcccacc ctcgtgaccaccctgacctacggcgtgcagtgcttcagccgctaccccgaccacatgaag cagcacgacttcttcaagtccgccatgcccgaaggctacgtccaggagcgcaccatcttc ttcaaggacgacggcaactacaagacccgcgccgaggtgaagttcgagggcgacaccctg gtgaaccgcatcgagctgaagggcatcgacttcaaggaggacggcaacatcctggggcac aagctggagtacaactacaacagccacaacgtctatatcatggccgacaagcagaagaac ggcatcaaggtgaacttcaagatccgccacaacatcgaggacggcagcgtgcagctcgcc gaccactaccagcagaacacccccatcggcgacggccccgtgctgctgcccgacaaccac tacctgagcacccagtccgccctgagcaaagaccccaacgagaagcgcgatcacatggtc ctgctggagttcgtgaccgccgccgggatcactctcggcatggacgagctgtacaagtcc ggactcagatctcgactagctagtagctag
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| EGFP_C_primer | | 4668 - 4689 |  | EGFP_C_primer |  | catggtcctgctggagttcgtg
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| IRES | | 4798 - 5301 |  | IRES |  | cccccccccctaacgttactggccgaagccgcttggaataaggccggtgtgcgtttgtct atatgttattttccaccatattgccgtcttttggcaatgtgagggcccggaaacctggcc ctgtcttcttgacgagcattcctaggggtctttcccctctcgccaaaggaatgcaaggtc tgttgaatgtcgtgaaggaagcagttcctctggaagcttcttgaagacaaacaacgtctg tagcgaccctttgcaggcagcggaaccccccacctggcgacaggtgcctctgcggccaaa agccacgtgtataagatacacctgcaaaggcggcacaaccccagtgccacgttgtgagtt ggatagttgtggaaagagtcaaatggctctcctcaagcgtattcaacaaggggctgaagg atgcccagaaggtaccccattgtatgggatctgatctggggcctcggtgcacatgcttta catgtgtttagtcgaggttaaaaa
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| ORF frame 3 | | 5364 - 6371 |  | ORF frame 3 |  | atggctagactggacaagagcaaagtcataaacggcgctctggaattactcaatggagtc ggtatcgaaggcctgacgacaaggaaactcgctcaaaagctgggagttgagcagcctacc ctgtactggcacgtgaagaacaagcgggccctgctcgatgccctgccaatcgagatgctg gacaggcatcatacccacttctgccccctggaaggcgagtcatggcaagactttctgcgg aacaacgccaagtcattccgctgtgctctcctctcacatcgcgacggggctaaagtgcat ctcggcacccgcccaacagagaaacagtacgaaaccctggaaaatcagctcgcgttcctg tgtcagcaaggcttctccctggagaacgcactgtacgctctgtccgccgtgggccacttt acactgggctgcgtattggaggaacaggagcatcaagtagcaaaagaggaaagagagaca cctaccaccgattctatgcccccacttctgagacaagcaattgagctgttcgaccggcag ggagccgaacctgccttccttttcggcctggaactaatcatatgcggattagaaaaacaa cttaaatgtgaaagtgggtcgccaaaaaagaagagaaaggtcgacggcggtggtgctttg tctcctcagcactctgctgtcactcaaggaagtatcatcaagaacaaggagggcatggat gctaagtcactaactgcctggtcccggacactggtgaccttcaaggatgtatttgtggac ttcaccagggaggagtggaagctgctggacactgctcagcagatcgtgtacagaaatgtg atgctggagaactataagaacctggtttccttgggttatcagcttactaagccagatgtg atcctccggttggagaagggagaagagccctggctggtggagagagaaattcaccaagag acccatcctgattcagagactgcatttgaaatcaaatcatcagtttaa
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| WPRE | | 6445 - 7032 |  | WPRE |  | tcaacctctggattacaaaatttgtgaaagattgactggtattcttaactatgttgctcc ttttacgctatgtggatacgctgctttaatgcctttgtatcatgctattgcttcccgtat ggctttcattttctcctccttgtataaatcctggttgctgtctctttatgaggagttgtg gcccgttgtcaggcaacgtggcgtggtgtgcactgtgtttgctgacgcaacccccactgg ttggggcattgccaccacctgtcagctcctttccgggactttcgctttccccctccctat tgccacggcggaactcatcgccgcctgccttgcccgctgctggacaggggctcggctgtt gggcactgacaattccgtggtgttgtcggggaagctgacgtcctttccatggctgctcgc ctgtgttgccacctggattctgcgcgggacgtccttctgctacgtcccttcggccctcaa tccagcggaccttccttcccgcggcctgctgccggctctgcggcctcttccgcgtcttcg ccttcgccctcagacgagtcggatctccctttgggccgcctccccgca
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| cPPT | | 7103 - 7118 |  | cPPT |  | aaaagaaaagggggga
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| U3PPT | | 7103 - 7124 |  | U3PPT |  | aaaagaaaaggggggactggaa
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| TRE | | 7155 - 7442 |  | TRE |  | ctcgagtttaccactccctatcagtgatagagaaaagtgaaagtcgagtttaccactccc tatcagtgatagagaaaagtgaaagtcgagtttaccactccctatcagtgatagagaaaa gtgaaagtcgagtttaccactccctatcagtgatagagaaaagtgaaagtcgagtttacc actccctatcagtgatagagaaaagtgaaagtcgagtttaccactccctatcagtgatag agaaaagtgaaagtcgagtttaccactccctatcagtgatagagaaaa
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| HIV-1_5_LTR | | 7478 - 7658 |  | HIV-1_5_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a
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| truncHIV-1_3_LTR | | 7478 - 7658 |  | truncHIV-1_3_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a
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| Sp6_primer | | 7701 - 7684 |  | Sp6_primer |  | atttaggtgacactatag
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| pBRrevBam_primer | | 8010 - 7991 |  | pBRrevBam_primer |  | ggtgatgtcggcgatatagg
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| tet(564-300) | | 8202 - 7939 |  | tet(564-300) |  | ctctcccttatgcgactcctgcattaggaagcagcccagtagtaggttgaggccgttgag caccgccgccgcaaggaatggtgcatgcaaggagatggcgcccaacagtcccccggccac ggggcctgccaccatacccacgccgaaacaagcgctcatgagcccgaagtggcgagcccg atcttccccatcggtgatgtcggcgatataggcgccagcaaccgcacctgtggcgccggt gatgccggccacgatgcgtccggc
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| pGEX_3_primer | | 8343 - 8365 |  | pGEX_3_primer |  | ccgggagctgcatgtgtcagagg
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| AmpR_promoter | | 8524 - 8552 |  | AmpR_promoter |  | ttcaaatatgtatccgctcatgagacaat
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| ORF frame 2 | | 8594 - 9454 |  | ORF frame 2 |  | atgagtattcaacatttccgtgtcgcccttattcccttttttgcggcattttgccttcct gtttttgctcacccagaaacgctggtgaaagtaaaagatgctgaagatcagttgggtgca cgagtgggttacatcgaactggatctcaacagcggtaagatccttgagagttttcgcccc gaagaacgttttccaatgatgagcacttttaaagttctgctatgtggcgcggtattatcc cgtattgacgccgggcaagagcaactcggtcgccgcatacactattctcagaatgacttg gttgagtactcaccagtcacagaaaagcatcttacggatggcatgacagtaagagaatta tgcagtgctgccataaccatgagtgataacactgcggccaacttacttctgacaacgatc ggaggaccgaaggagctaaccgcttttttgcacaacatgggggatcatgtaactcgcctt gatcgttgggaaccggagctgaatgaagccataccaaacgacgagcgtgacaccacgatg cctgtagcaatggcaacaacgttgcgcaaactattaactggcgaactacttactctagct tcccggcaacaattaatagactggatggaggcggataaagttgcaggaccacttctgcgc tcggcccttccggctggctggtttattgctgataaatctggagccggtgagcgtgggtct cgcggtatcattgcagcactggggccagatggtaagccctcccgtatcgtagttatctac acgacggggagtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcc tcactgattaagcattggtaa
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| Ampicillin | | 8594 - 9454 |  | Ampicillin |  | atgagtattcaacatttccgtgtcgcccttattcccttttttgcggcattttgccttcct gtttttgctcacccagaaacgctggtgaaagtaaaagatgctgaagatcagttgggtgca cgagtgggttacatcgaactggatctcaacagcggtaagatccttgagagttttcgcccc gaagaacgttttccaatgatgagcacttttaaagttctgctatgtggcgcggtattatcc cgtattgacgccgggcaagagcaactcggtcgccgcatacactattctcagaatgacttg gttgagtactcaccagtcacagaaaagcatcttacggatggcatgacagtaagagaatta tgcagtgctgccataaccatgagtgataacactgcggccaacttacttctgacaacgatc ggaggaccgaaggagctaaccgcttttttgcacaacatgggggatcatgtaactcgcctt gatcgttgggaaccggagctgaatgaagccataccaaacgacgagcgtgacaccacgatg cctgtagcaatggcaacaacgttgcgcaaactattaactggcgaactacttactctagct tcccggcaacaattaatagactggatggaggcggataaagttgcaggaccacttctgcgc tcggcccttccggctggctggtttattgctgataaatctggagccggtgagcgtgggtct cgcggtatcattgcagcactggggccagatggtaagccctcccgtatcgtagttatctac acgacggggagtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcc tcactgattaagcattggtaa
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| pBR322_origin | | 9609 - 10228 |  | pBR322_origin |  | agatcaaaggatcttcttgagatcctttttttctgcgcgtaatctgctgcttgcaaacaa aaaaaccaccgctaccagcggtggtttgtttgccggatcaagagctaccaactctttttc cgaaggtaactggcttcagcagagcgcagataccaaatactgtccttctagtgtagccgt agttaggccaccacttcaagaactctgtagcaccgcctacatacctcgctctgctaatcc tgttaccagtggctgctgccagtggcgataagtcgtgtcttaccgggttggactcaagac gatagttaccggataaggcgcagcggtcgggctgaacggggggttcgtgcacacagccca gcttggagcgaacgacctacaccgaactgagatacctacagcgtgagcattgagaaagcg ccacgcttcccgaagggagaaaggcggacaggtatccggtaagcggcagggtcggaacag gagagcgcacgagggagcttccagggggaaacgcctggtatctttatagtcctgtcgggt ttcgccacctctgacttgagcgtcgatttttgtgatgctcgtcaggggggcggagcctat ggaaaaacgccagcaacgcg
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| pBABE_3_primer | | 10474 - 10454 |  | pBABE_3_primer |  | accctaactgacacacattcc
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| SV40_enhancer | | 10675 - 10460 |  | SV40_enhancer |  | gagaatgggcggaactgggcggagttaggggcgggatgggcggagttaggggcgggacta tggttgctgactaattgagatgcatgctttgcatacttctgcctgctggggagcctgggg actttccacacctggttgctgactaattgagatgcatgctttgcatacttctgcctgctg gggagcctggggactttccacaccctaactgacaca
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| SV40_promoter | | 10472 - 10740 |  | SV40_promoter |  | ggtgtggaaagtccccaggctccccagcaggcagaagtatgcaaagcatgcatctcaatt agtcagcaaccaggtgtggaaagtccccaggctccccagcaggcagaagtatgcaaagca tgcatctcaattagtcagcaaccatagtcccgcccctaactccgcccatcccgcccctaa ctccgcccagttccgcccattctccgccccatggctgactaattttttttatttatgcag aggccgaggccgcctcggcctctgagcta
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| SV40_origin | | 10639 - 10716 |  | SV40_origin |  | atcccgcccctaactccgcccagttccgcccattctccgccccatggctgactaattttt tttatttatgcagaggcc
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| SV40_promoter | | 10592 - 10794 |  | SV40_promoter |  | tgcatctcaattagtcagcaaccatagtcccgcccctaactccgcccatcccgcccctaa ctccgcccagttccgcccattctccgccccatggctgactaattttttttatttatgcag aggccgaggccgcctcggcctctgagctattccagaagtagtgaggaggcttttttggag gcctaggcttttgcaaaaagctt
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| SV40pro_F_primer | | 10701 - 10720 |  | SV40pro_F_primer |  | tatttatgcagaggccgagg
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| SV40_int | | 11921 - 11936 |  | SV40_int |  | ggtaaatataaaattt
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| SV40_3_splice | | 11942 - 11989 |  | SV40_3_splice |  | tgtataatgtgttaaactactgattctaattgtttgtgtattttagat
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| SV40_PA_terminator | | 12565 - 12696 |  | SV40_PA_terminator |  | ttgtttattgcagcttataatggttacaaataaagcaatagcatcacaaatttcacaaat aaagcatttttttcactgcattctagttgtggtttgtccaaactcatcaatgtatcttat catgtctggatc
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| EBV_rev_primer | | 12653 - 12672 |  | EBV_rev_primer |  | gtggtttgtccaaactcatc
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