| J72008 bacterial strain with plasmid | | phi80 integration helper plasmid pInt80-649 | Ampicillin |
Anderson
| BglBricks: A flexible standard for biological part assembly.
J Biol Eng. 2010 . 4(1):1.
|
| HL 818 (=HL 716 + pHL 98) | | pLlacO-1:DsrA-mcherry, pLtetO-1:rpoS::gfp (Other) | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 839 (=HL 716 + pHL 108) | | pLlacO-1:MicC-mCherry, pLtetO-1:ompC::gfp (Other) | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 849 (=HL 716 + micC knockout_KanR) | | | Kanamycin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 1178 (=HL 862 + pHL 282) | | pLtetO-1:mCherry, pLlacO-1:ompC::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 1329 (=HL 865 + pHL 344) | | pLtetO-1:mCherry, pLlacO-1:rpoS::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 1474 (=HL 862 + pHL 404) | | pLtetO-1:MicC, pLlacO-1:hfq, pLtetO-1:ompC::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 2300 (=HL 716 + pHL 745) | | pLtetO-1:RhyB-mCherry, pLlacO-1:sodB::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 2304 (=HL 716 + pHL 269) | | pLtetO-1:MicC-mCherry, pLlacO-1:ompC::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 2305 (=HL 716 + pHL 765) | | pLtetO-1:MicC, pLtetO-1:DsrA, pLlacO-1:ompC::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 2307 (=HL 716 + pHL 777) | | pLtetO-1:MicC, pLtetO-1:RhyB, pLlacO-1:ompC::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 2308 (=HL 716 + pHL 814) | | pLtetO-1:MicC, pLtetO-1:OxyS, pLlacO-1:ompC::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 2312 (=HL 716 + pHL 787) | | pLtetO-1:MicC, pLtetO-1:rpoS::mCherry, pLlacO-1:ompC::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 2314 (=HL 716 + pHL 818) | | pLtetO-1:MicC, pLtetO-1:fhlA::mCherry, pLlacO-1:ompC::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 2625 (=HL 716 + pHL 908) | | pLlacO-1:RhyB::mCherry, pLtetO-1m9:sodB::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 2627 (=HL 770 + pHL 908) | | pLlacO-1:RhyB::mCherry, pLtetO-1m9:sodB::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 2729 (=HL 716 + rhyB knockout_KanR) | | | Kanamycin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 2817 (=HL 716 + pHL 720) | | pLtetO-1:mCherry, pLlacO-1:sodB::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 2818 (=HL 865 + pHL 489) | | pLtetO-1:DsrA, pLlacO-1:hfq, pLtetO-1:rpoS::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 2839 (=HL 2752 + pHL 720) | | pLtetO-1:mCherry, pLlacO-1:sodB::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 2869 (=HL 2752 + pHL 991) | | pLtetO-1:RhyB, pLlacO-1:hfq, pLtetO-1m9:sodB::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3076 (=HL 716 + pHL 1069) | | pCon:MicC, pLlacO-1:sodB::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3151 (=HL 716 + pHL 1037) | | pLtetO-1:DsrA, pCon:MicC, pLlacO-1:rpoS::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3152 (=HL 716 + pHL 1056) | | pCon:MicC, pLlacO-1:rpoS::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3186 (=HL 716 + pHL 282) | | pLtetO-1:mCherry, pLlacO-1:ompC::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3326 (=HL 716 + pHL 1008) | | pLlacO-1:DsrA-mCherry, pLtetO-1:RBS (st7) gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3327 (=HL 716 + pHL 1009) | | pLlacO-1:MicC-mCherry, pLtetO-1:RBS (st7) gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3330 (=HL 770 + pHL 1009) | | pLlacO-1:MicC-mCherry, pLtetO-1:RBS (st7) gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3325 (=HL 770 + rhyB knockout_KanR) | | | Kanamycin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3347 (=HL 3338 + pHL 720) | | pLtetO-1:mCherry, pLlacO-1:sodB::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3357 (=HL 716 + pHL 1191) | | pLlacO-1:OxyS-mCherry, pLtetO-1:RBS (st7) gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3375 (=HL 865 + pHL 1008) | | pLlacO-1:DsrA-mCherry, pLtetO-1:RBS (st7) gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3395 (=HL 862 + pHL 1009) | | pLlacO-1:MicC-mCherry, pLtetO-1:RBS (st7) gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3448 (=HL 3425 + pHL 1191) | | pLlacO-1:OxyS-mCherry, pLtetO-1:RBS (st7) gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3449 (=HL 3262 + pHL 1179) | | pLtetO-1:mCherry, pLlacO-1:fhlA::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3450 (=HL 3262 + pHL 1191) | | pLlacO-1:OxyS-mCherry, pLtetO-1:RBS (st7) gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3545 (=HL 770 + pHL 1213) | | pLlacO-1:hfq, pLtetO-1:RBS (st7) gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3612 (=HL 716 + pHL 841) | | pLtetO-1:RhyB-mCherry, pLlacO-1:ompC::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3619 (=HL 716 + pHL 1228) | | pLtetO-1:DsrA-mCherry, pLlacO-1:ompC::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3722 (=HL 716 + pHL 404) | | pLtetO-1:MicC, pLlacO-1:hfq, pLtetO-1:ompC::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3723 (=HL 716 + pHL 489) | | pLtetO-1:DsrA, pLlacO-1:hfq, pLtetO-1:rpoS::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3724 (=HL 716 + pHL 991) | | pLtetO-1:RhyB, pLlacO-1:hfq, pLtetO-1m9:sodB::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3858 (=HL 716 + pHL 1304) | | pLtetO-1:rpoS::mCherry, pLlacO-1:ompC::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3859 (=HL 716 + pHL 1305) | | pLtetO-1:fhlA::mCherry, pLlacO-1:ompC::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3904 (=HL 770 + pHL 991) | | pLtetO-1:RhyB, pLlacO-1:hfq, pLtetO-1m9:sodB::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 4120 (=HL 716 + pHL 1370) | | pLtetO-1:DsrA, pCon:T7(st3) (900bps), pLlacO-1:rpoS::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 4175 (=HL 716 + pHL 1391) | | pLlacO-1:rpoS::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 4178 (=HL 862 + pHL 1360) | | pLlacO-1:hfq, pLtetO-1:ompC::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 4179 (=HL 865 + pHL 1381) | | pLlacO-1:hfq, pLtetO-1:rpoS::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 4180 (=HL 2752 + pHL 1358) | | pLlacO-1:hfq, pLtetO-1m9:sodB::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 4202 (=HL 716 + pHL 1389) | | pLtetO-1:DsrA, pLlacO-1:rpoS::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 4212 (=HL 716 + pHL 1414) | | pCon:fhlA::T7noRBS(900bps), pLlacO-1:rpoS::gfp | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 4218 (=HL 716 + pHL 1411) | | pLtetO-1:DsrA, pCon:fhlA:T7noRBS(900bps), pLlacO-1:rpoS::gfp (Other) | Ampicillin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL13 | | See comments | Chloramphenicol |
Lim
| A multistep epigenetic switch enables the stable inheritance of DNA methylation states.
Nat Genet. 2007 Feb . 39(2):269-75.
|
| HL23 | | See comments, See comments | Chloramphenicol |
Lim
| A multistep epigenetic switch enables the stable inheritance of DNA methylation states.
Nat Genet. 2007 Feb . 39(2):269-75.
|
| HL24 | | See comments | Chloramphenicol |
Lim
| A multistep epigenetic switch enables the stable inheritance of DNA methylation states.
Nat Genet. 2007 Feb . 39(2):269-75.
|
| HL168 | | See comments | Chloramphenicol |
Lim
| A multistep epigenetic switch enables the stable inheritance of DNA methylation states.
Nat Genet. 2007 Feb . 39(2):269-75.
|
| HL3796 | | See comments | Chloramphenicol |
Lim
|
Han Lim Lab Strains
(unpublished)
|
| HL4142 | | See comments | Chloramphenicol |
Lim
| Rapid and robust signaling in the CsrA cascade via RNA-protein interactions and feedback regulation.
Proc Natl Acad Sci U S A. 2013 Aug 6;110(32):13120-5. doi: 10.1073/pnas.1308476110. Epub 2013 Jul 22.
|
| HL5086 | | See comments | Kanamycin |
Lim
| Minimal effect of gene clustering on expression in Escherichia coli.
Genetics. 2013 Feb;193(2):453-65. doi: 10.1534/genetics.112.147199. Epub 2012 Dec 5.
|
| HL5113 | | See comments | Kanamycin |
Lim
| Minimal effect of gene clustering on expression in Escherichia coli.
Genetics. 2013 Feb;193(2):453-65. doi: 10.1534/genetics.112.147199. Epub 2012 Dec 5.
|
| HL3515 | | See comments | Kanamycin |
Lim
| Fundamental relationship between operon organization and gene expression.
Proc Natl Acad Sci U S A. 2011 Jun 28;108(26):10626-31. doi: 10.1073/pnas.1105692108. Epub 2011 Jun 13.
|
| HL3953 | | See comments | Kanamycin |
Lim
| Minimal effect of gene clustering on expression in Escherichia coli.
Genetics. 2013 Feb;193(2):453-65. doi: 10.1534/genetics.112.147199. Epub 2012 Dec 5.
|
| HL3546 | | See comments | Kanamycin |
Lim
| Fundamental relationship between operon organization and gene expression.
Proc Natl Acad Sci U S A. 2011 Jun 28;108(26):10626-31. doi: 10.1073/pnas.1105692108. Epub 2011 Jun 13.
|
| HL3573 | | See comments | Kanamycin |
Lim
| Minimal effect of gene clustering on expression in Escherichia coli.
Genetics. 2013 Feb;193(2):453-65. doi: 10.1534/genetics.112.147199. Epub 2012 Dec 5.
|
| HL3578 | | See comments | Kanamycin |
Lim
| Minimal effect of gene clustering on expression in Escherichia coli.
Genetics. 2013 Feb;193(2):453-65. doi: 10.1534/genetics.112.147199. Epub 2012 Dec 5.
|
| Strain Phi80 JQ929581 | | mKate2 (Synthetic), Superfolder GFP (Synthetic) | Kanamycin |
Endy
| Rewritable digital data storage in live cells via engineered control of recombination directionality.
Proc Natl Acad Sci U S A. 2012 Jun 5;109(23):8884-9. Epub 2012 May 21.
|
| Strain Phi80 JQ929582 | | mKate2 (Synthetic), Superfolder GFP (Synthetic) | Kanamycin |
Endy
| Rewritable digital data storage in live cells via engineered control of recombination directionality.
Proc Natl Acad Sci U S A. 2012 Jun 5;109(23):8884-9. Epub 2012 May 21.
|
| Strain HK022 JQ929581 | | mKate2 (Synthetic), Superfolder GFP (Synthetic) | Kanamycin |
Endy
| Rewritable digital data storage in live cells via engineered control of recombination directionality.
Proc Natl Acad Sci U S A. 2012 Jun 5;109(23):8884-9. Epub 2012 May 21.
|
| rEc2 | oriT-kan template | | Kanamycin |
Isaacs
| Precise manipulation of bacterial chromosomes by conjugative assembly genome engineering.
Nat Protoc. 2014 Oct;9(10):2285-300. doi: 10.1038/nprot.2014.081. Epub 2014 Sep 4.
|
| rEc 27.H.Sc | specR template | | Spectinomycin |
Isaacs
| Precise manipulation of bacterial chromosomes by conjugative assembly genome engineering.
Nat Protoc. 2014 Oct;9(10):2285-300. doi: 10.1038/nprot.2014.081. Epub 2014 Sep 4.
|
| pRK24 | broad-host range natural conjugative plasmid | E. coli Conjugation genes | Tetracycline |
Isaacs
| Precise manipulation of bacterial chromosomes by conjugative assembly genome engineering.
Nat Protoc. 2014 Oct;9(10):2285-300. doi: 10.1038/nprot.2014.081. Epub 2014 Sep 4.
|
| HL 713 | MG 1655 + lacIq_KanR inserted into the chromosome at the intS site | none (Other) | Kanamycin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 751 | MG 1655 + lacIq inserted into the chromosome at the intS site + Δhfq_KanR | none (Other) | Kanamycin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 852 | MG 1655 + lacIq inserted into the chromosome at the intS site + ΔdsrA_KanR | none (Other) | Kanamycin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 1120 | MG 1655 + lacIq inserted into the chromosome at the intS site + ΔmicC + Δhfq_KanR | none (Other) | Kanamycin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 1179 | MG 1655 + lacIq inserted into the chromosome at the intS site + ΔdsrA + Δhfq_KanR | none (Other) | Kanamycin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3221 | MG 1655 + lacIq inserted into the chromosome at the intS site + ΔoxyS_KanR | none (Other) | Kanamycin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3387 | MG 1655 + lacIq inserted into the chromosome at the intS site + Δhfq + ΔoxyS_KanR | none (Other) | Kanamycin |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 1216 | MG 1655 + lacIq inserted into the chromosome at the intS site + ΔmicC + ΔaraC_KanR | none (Other) | Kanamycin |
Lim
| Direct comparison of small RNA and transcription factor signaling.
Nucleic Acids Res. 2012 May 22.
|
| HL 1254 | MG 1655 + lacIq inserted into the chromosome at the intS site + ΔdsrA + ΔaraC_KanR | none (Other) | Kanamycin |
Lim
| Direct comparison of small RNA and transcription factor signaling.
Nucleic Acids Res. 2012 May 22.
|
| HL 932 | MG1655 + ΔlacI | none (Other) | none |
Lim
| Modulating the frequency and bias of stochastic switching to control phenotypic variation.
Nat Commun. 2014 Aug 4;5:4574. doi: 10.1038/ncomms5574.
|
| HL 1255 | MG1655 + fimS (off orientation)::gfp::Asp terminator::CamR at fimA | none (Other) | Chloramphenicol |
Lim
| Modulating the frequency and bias of stochastic switching to control phenotypic variation.
Nat Commun. 2014 Aug 4;5:4574. doi: 10.1038/ncomms5574.
|
| HL 1285 | MG1655 + fimS (off orientation)::gfp::Asp terminator at fimA | none (Other) | none |
Lim
| Modulating the frequency and bias of stochastic switching to control phenotypic variation.
Nat Commun. 2014 Aug 4;5:4574. doi: 10.1038/ncomms5574.
|
| HL 4195 | MG1655 + fimS (off orientation)::gfp::Asp terminator at fimA + ΔlacI + KanR replaces fimB and fimE(partial) | none (Other) | Kanamycin |
Lim
| Modulating the frequency and bias of stochastic switching to control phenotypic variation.
Nat Commun. 2014 Aug 4;5:4574. doi: 10.1038/ncomms5574.
|
| HL 4233 | ΔfimB + ΔfimE + ΔfimA | none (Other) | none |
Lim
| Modulating the frequency and bias of stochastic switching to control phenotypic variation.
Nat Commun. 2014 Aug 4;5:4574. doi: 10.1038/ncomms5574.
|
| HL 6139 | MG1655 + fimS (off orientation)::gfp::Asp terminator at fimA + ΔlacI + KanR replaces fimB and fimE(stop codon) | none (Other) | Kanamycin |
Lim
| Modulating the frequency and bias of stochastic switching to control phenotypic variation.
Nat Commun. 2014 Aug 4;5:4574. doi: 10.1038/ncomms5574.
|
| HL 6166 | MG1655 + fimS (off orientation)::gfp::Asp terminator at fimA + ΔlacI + KanR replaces fimB and fimE(IRL) | none (Other) | Kanamycin |
Lim
| Modulating the frequency and bias of stochastic switching to control phenotypic variation.
Nat Commun. 2014 Aug 4;5:4574. doi: 10.1038/ncomms5574.
|
| HL 6279 | MG1655 + fimS (off orientation)::gfpAAV tag::Asp terminator::CamR at fimA + ΔlacI + KanR replaces fimB and fimE(partial) | none (Other) | Kanamycin |
Lim
| Modulating the frequency and bias of stochastic switching to control phenotypic variation.
Nat Commun. 2014 Aug 4;5:4574. doi: 10.1038/ncomms5574.
|
| HL3721 | HL716 + ΔcsrB + ΔcsrC + ΔglgCAP + ΔpgaABCD | none (Other) | none |
Lim
| Rapid and robust signaling in the CsrA cascade via RNA-protein interactions and feedback regulation.
Proc Natl Acad Sci U S A. 2013 Aug 6;110(32):13120-5. doi: 10.1073/pnas.1308476110. Epub 2013 Jul 22.
|
| HL3796 | HL716 + ΔcsrA + ΔcsrB + ΔcsrC + ΔglgCAP + ΔpgaABCD | none (Other) | none |
Lim
|
Lim Lab unpublished plasmids (csrA crosstalk)
(unpublished)
|
| HL4018 | HL716 + ΔcsrB + ΔcsrC + ΔcsrD + ΔglgCAP + ΔpgaABCD | none (Other) | none |
Lim
|
Lim Lab unpublished plasmids (csrA crosstalk)
(unpublished)
|
| pSEVAT1Z1A | GeneGuard vector cassette: thyA, R6K COR, Zeta toxin; with ampR as cargo. | | Ampicillin |
Ellis
| GeneGuard: a Modular Plasmid System Designed for Biosafety.
ACS Synth Biol. 2014 May 13.
|
| pSEVAD1Z1A | GeneGuard vector cassette: dapA, R6K COR, Zeta toxin; with ampR as cargo. | | Ampicillin |
Ellis
| GeneGuard: a Modular Plasmid System Designed for Biosafety.
ACS Synth Biol. 2014 May 13.
|
| pSEVAT1K1A | GeneGuard vector cassette: thyA, R6K COR, Kid toxin; with ampR as cargo. | | Ampicillin |
Ellis
| GeneGuard: a Modular Plasmid System Designed for Biosafety.
ACS Synth Biol. 2014 May 13.
|
| pSEVAD1K1A | GeneGuard vector cassette: dapA, R6K COR, Kid toxin; with ampR as cargo. | | Ampicillin |
Ellis
| GeneGuard: a Modular Plasmid System Designed for Biosafety.
ACS Synth Biol. 2014 May 13.
|
| pSEVAT7Z1A | GeneGuard vector cassette: thyA, ColE2 COR, Zeta toxin; with ampR as cargo. | | Ampicillin |
Ellis
| GeneGuard: a Modular Plasmid System Designed for Biosafety.
ACS Synth Biol. 2014 May 13.
|
| pSEVAD7Z1A | GeneGuard vector cassette: dapA, ColE2 COR, Zeta toxin; with ampR as cargo. | | Ampicillin |
Ellis
| GeneGuard: a Modular Plasmid System Designed for Biosafety.
ACS Synth Biol. 2014 May 13.
|
| pSEVAT7K1A | GeneGuard vector cassette: thyA, ColE2 COR, Kid toxin; with ampR as cargo. | | Ampicillin |
Ellis
| GeneGuard: a Modular Plasmid System Designed for Biosafety.
ACS Synth Biol. 2014 May 13.
|
| pSEVAD7K1A | GeneGuard vector cassette: dapA, ColE2 COR, Kid toxin; with ampR as cargo. | | Ampicillin |
Ellis
| GeneGuard: a Modular Plasmid System Designed for Biosafety.
ACS Synth Biol. 2014 May 13.
|
| HL 716 | Lim Lab Strain | See comments | None |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 770 | Lim Lab Strain | See comments | None |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 862 | Lim Lab Strain | See comments | None |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 865 | Lim Lab Strain | See comments | None |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 1128 | Lim Lab Strain | See comments | None |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 1188 | Lim Lab Strain | See comments | None |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 2752 | Lim Lab Strain | See comments | None |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 3338 | Lim Lab Strain | See comments | None |
Lim
| Disruption of small RNA signaling caused by competition for Hfq.
Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.
|
| HL 1745 | Lim Lab Strain | See comments | None |
Lim
| Regulatory consequences of gene translocation in bacteria.
Nucleic Acids Res. 2012 Oct;40(18):8979-92. doi: 10.1093/nar/gks694. Epub 2012 Jul 24.
|
| HL 1852 | Lim Lab Strain | See comments | None |
Lim
| Regulatory consequences of gene translocation in bacteria.
Nucleic Acids Res. 2012 Oct;40(18):8979-92. doi: 10.1093/nar/gks694. Epub 2012 Jul 24.
|
| HL 1951 | Lim Lab Strain | See comments | None |
Lim
| Regulatory consequences of gene translocation in bacteria.
Nucleic Acids Res. 2012 Oct;40(18):8979-92. doi: 10.1093/nar/gks694. Epub 2012 Jul 24.
|
| HL 2028 | Lim Lab Strain | See comments | None |
Lim
| Regulatory consequences of gene translocation in bacteria.
Nucleic Acids Res. 2012 Oct;40(18):8979-92. doi: 10.1093/nar/gks694. Epub 2012 Jul 24.
|
| HL 5220 | Lim Lab Strain | See comments | None |
Lim
| Regulatory consequences of gene translocation in bacteria.
Nucleic Acids Res. 2012 Oct;40(18):8979-92. doi: 10.1093/nar/gks694. Epub 2012 Jul 24.
|
| HL 5221 | Lim Lab Strain | See comments | None |
Lim
| Regulatory consequences of gene translocation in bacteria.
Nucleic Acids Res. 2012 Oct;40(18):8979-92. doi: 10.1093/nar/gks694. Epub 2012 Jul 24.
|
| HL 5222 | Lim Lab Strain | See comments | None |
Lim
| Regulatory consequences of gene translocation in bacteria.
Nucleic Acids Res. 2012 Oct;40(18):8979-92. doi: 10.1093/nar/gks694. Epub 2012 Jul 24.
|
| E. coli K-12 MG1655 RARE | This E. coli chassis displays reduced endogenous reduction of aromatic and aliphatic aldehydes | | None |
Prather
| Synthesis and accumulation of aromatic aldehydes in an engineered strain of Escherichia coli.
J Am Chem Soc. 2014 Aug 20;136(33):11644-54. doi: 10.1021/ja506664a. Epub 2014 Aug 8.
|
| HL2483 | Lim Lab strain: MG1655 + lacIq intergrated at intS + Pcon::TetR inserted into the chromosome at galK + ΔglgCAP + ΔcsrB + ΔcsrC + ΔcsrD | see comments | None |
Lim
| Paradoxical suppression of small RNA activity at high Hfq concentrations due to random-order binding.
Nucleic Acids Res. 2015 Aug 10. pii: gkv777.
|
| HL5410 | Lim Lab strain: MG1655 + lacIq intergrated at intS + ΔglmZ + Dhfq | see comments | None |
Lim
| Paradoxical suppression of small RNA activity at high Hfq concentrations due to random-order binding.
Nucleic Acids Res. 2015 Aug 10. pii: gkv777.
|
| HL 5226 | Lim Lab strain: MG1655 + lacIq intergrated at intS + ΔglmZ | see comments | None |
Lim
| Paradoxical suppression of small RNA activity at high Hfq concentrations due to random-order binding.
Nucleic Acids Res. 2015 Aug 10. pii: gkv777.
|
| CY026 | Bacterial strain: E. coli BW25113 ΔlacI ΔaraC ΔsdiA Ptrc*-cinR Ptrc*-rhlR | RhlR, CinR | Chloramphenicol |
Bennett
| SYNTHETIC BIOLOGY. Emergent genetic oscillations in a synthetic microbial consortium.
Science. 2015 Aug 28;349(6251):986-9. doi: 10.1126/science.aaa3794.
|
| CY027 | Bacterial strain: E. coli BW25113 ΔlacI ΔaraC ΔsdiA Ptrc*-cinR Ptrc*-rhlR | | None |
Bennett
| SYNTHETIC BIOLOGY. Emergent genetic oscillations in a synthetic microbial consortium.
Science. 2015 Aug 28;349(6251):986-9. doi: 10.1126/science.aaa3794.
|
