LOCUS       sequence-109626-        8348 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  Lentiviral expression of Flag-tagged murine transcription factor 
            Runx1c.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 8348)
  AUTHORS   Batta K, Florkowska M, Kouskoff V, Lacaud G
  TITLE     Direct reprogramming of murine fibroblasts to hematopoietic 
            progenitor cells.
  JOURNAL   Cell Rep. 2014 Dec 11;9(5):1871-84. doi: 
            10.1016/j.celrep.2014.11.002. Epub 2014 Nov 26.
  PUBMED    25466247
REFERENCE   2  (bases 1 to 8348)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; doi: 
            "10.1016/j.celrep.2014.11.002"; journalName: "Cell Rep"; date: 
            "2014-12-11- 11"; volume: "9"; issue: "5"; pages: "1871-84"
COMMENT     Sequence Label: Flag-mRunx1c
FEATURES             Location/Qualifiers
     source          1..8348
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     promoter        27..131
                     /gene="bla"
                     /label=AmpR promoter
     CDS             join(132..200,201..992)
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     complement(350..369)
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
     rep_origin      1163..1751
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     1652..1671
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     primer_bind     1905..1922
                     /label=L4440
                     /note="L4440 vector, forward primer"
     protein_bind    2039..2060
                     /label=CAP binding site
                     /bound_moiety="E. coli catabolite activator protein"
                     /note="CAP binding activates transcription in the presence 
                     of cAMP."
     promoter        join(2075..2080,2081..2098,2099..2105)
                     /label=lac promoter
                     /note="promoter for the E. coli lac operon"
     protein_bind    2113..2129
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     primer_bind     2118..2140
                     /label=M13/pUC Reverse
                     /note="In lacZ gene"
     primer_bind     2137..2153
                     /label=M13 rev
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     2137..2153
                     /label=M13 Reverse
                     /note="In lacZ gene. Also called M13-rev"
     primer_bind     2172..2192
                     /label=T3
                     /note="T3 promoter, forward primer"
     promoter        2174..2192
                     /label=T3 promoter
                     /note="promoter for bacteriophage T3 RNA polymerase"
     LTR             2399..2656
                     /label=5' LTR (truncated)
                     /note="truncated 5' long terminal repeat (LTR) from HIV-1"
     misc_feature    2700..2825
                     /label=HIV-1 Psi
                     /note="packaging signal of human immunodeficiency virus 
                     type 1"
     misc_feature    3318..3551
                     /label=RRE
                     /note="The Rev response element (RRE) of HIV-1 allows for 
                     Rev-dependent mRNA export from the nucleus to the 
                     cytoplasm."
     CDS             3735..3779
                     /codon_start=1
                     /product="antigenic peptide corresponding to amino acids 
                     655 to 669 of the HIV envelope protein gp41 (Lutje Hulsik 
                     et al., 2013)"
                     /label=gp41 peptide
                     /note="recognized by the 2H10 single-chain llama nanobody"
                     /translation="KNEQELLELDKWASL"
     misc_feature    4041..4158
                     /label=cPPT/CTS
                     /note="central polypurine tract and central termination 
                     sequence of HIV-1"
     promoter        4197..4408
                     /label=EF-1-alpha core promoter
                     /note="core promoter for human elongation factor 
                     EF-1-alpha"
     regulatory      4429..4438
                     /label=Kozak sequence
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
                     /regulatory_class="other"
     CDS             4438..4461
                     /codon_start=1
                     /product="FLAG(R) epitope tag, followed by an enterokinase 
                     cleavage site"
                     /label=FLAG
                     /translation="DYKDDDDK"
     LTR             7089..7322
                     /label=3' LTR (Delta-U3)
                     /note="self-inactivating 3' long terminal repeat (LTR) from
                     HIV-1"
     polyA_signal    7394..7515
                     /label=SV40 poly(A) signal
                     /note="SV40 polyadenylation signal"
     primer_bind     complement(7431..7450)
                     /label=SV40pA-R
                     /note="SV40 polyA, reverse primer"
     primer_bind     7485..7504
                     /label=EBV-rev
                     /note="SV40 polyA terminator, reverse primer"
     rep_origin      7534..7669
                     /label=SV40 ori
                     /note="SV40 origin of replication"
     primer_bind     complement(7701..7720)
                     /label=T7
                     /note="T7 promoter, forward primer"
     promoter        complement(7702..7720)
                     /label=T7 promoter
                     /note="promoter for bacteriophage T7 RNA polymerase"
     primer_bind     complement(7730..7747)
                     /label=M13 Forward
                     /note="In lacZ gene. Also called M13-F20 or M13 (-21) 
                     Forward"
     primer_bind     complement(7730..7746)
                     /label=M13 fwd
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     complement(7739..7761)
                     /label=M13/pUC Forward
                     /note="In lacZ gene"
     rep_origin      7891..8346
                     /direction=RIGHT
                     /label=f1 ori
                     /note="f1 bacteriophage origin of replication; arrow 
                     indicates direction of (+) strand synthesis"
     primer_bind     complement(7978..7997)
                     /label=F1ori-R
                     /note="F1 origin, reverse primer"
     primer_bind     8188..8209
                     /label=F1ori-F
                     /note="F1 origin, forward primer"
ORIGIN
        1 caggtggcac ttttcgggga aatgtgcgcg gaacccctat ttgtttattt ttctaaatac
       61 attcaaatat gtatccgctc atgagacaat aaccctgata aatgcttcaa taatattgaa
      121 aaaggaagag tatgagtatt caacatttcc gtgtcgccct tattcccttt tttgcggcat
      181 tttgccttcc tgtttttgct cacccagaaa cgctggtgaa agtaaaagat gctgaagatc
      241 agttgggtgc acgagtgggt tacatcgaac tggatctcaa cagcggtaag atccttgaga
      301 gttttcgccc cgaagaacgt tttccaatga tgagcacttt taaagttctg ctatgtggcg
      361 cggtattatc ccgtattgac gccgggcaag agcaactcgg tcgccgcata cactattctc
      421 agaatgactt ggttgagtac tcaccagtca cagaaaagca tcttacggat ggcatgacag
      481 taagagaatt atgcagtgct gccataacca tgagtgataa cactgcggcc aacttacttc
      541 tgacaacgat cggaggaccg aaggagctaa ccgctttttt gcacaacatg ggggatcatg
      601 taactcgcct tgatcgttgg gaaccggagc tgaatgaagc cataccaaac gacgagcgtg
      661 acaccacgat gcctgtagca atggcaacaa cgttgcgcaa actattaact ggcgaactac
      721 ttactctagc ttcccggcaa caattaatag actggatgga ggcggataaa gttgcaggac
      781 cacttctgcg ctcggccctt ccggctggct ggtttattgc tgataaatct ggagccggtg
      841 agcgtgggtc tcgcggtatc attgcagcac tggggccaga tggtaagccc tcccgtatcg
      901 tagttatcta cacgacgggg agtcaggcaa ctatggatga acgaaataga cagatcgctg
      961 agataggtgc ctcactgatt aagcattggt aactgtcaga ccaagtttac tcatatatac
     1021 tttagattga tttaaaactt catttttaat ttaaaaggat ctaggtgaag atcctttttg
     1081 ataatctcat gaccaaaatc ccttaacgtg agttttcgtt ccactgagcg tcagaccccg
     1141 tagaaaagat caaaggatct tcttgagatc ctttttttct gcgcgtaatc tgctgcttgc
     1201 aaacaaaaaa accaccgcta ccagcggtgg tttgtttgcc ggatcaagag ctaccaactc
     1261 tttttccgaa ggtaactggc ttcagcagag cgcagatacc aaatactgtc cttctagtgt
     1321 agccgtagtt aggccaccac ttcaagaact ctgtagcacc gcctacatac ctcgctctgc
     1381 taatcctgtt accagtggct gctgccagtg gcgataagtc gtgtcttacc gggttggact
     1441 caagacgata gttaccggat aaggcgcagc ggtcgggctg aacggggggt tcgtgcacac
     1501 agcccagctt ggagcgaacg acctacaccg aactgagata cctacagcgt gagctatgag
     1561 aaagcgccac gcttcccgaa gggagaaagg cggacaggta tccggtaagc ggcagggtcg
     1621 gaacaggaga gcgcacgagg gagcttccag ggggaaacgc ctggtatctt tatagtcctg
     1681 tcgggtttcg ccacctctga cttgagcgtc gatttttgtg atgctcgtca ggggggcgga
     1741 gcctatggaa aaacgccagc aacgcggcct ttttacggtt cctggccttt tgctggcctt
     1801 ttgctcacat gttctttcct gcgttatccc ctgattctgt ggataaccgt attaccgcct
     1861 ttgagtgagc tgataccgct cgccgcagcc gaacgaccga gcgcagcgag tcagtgagcg
     1921 aggaagcgga agagcgccca atacgcaaac cgcctctccc cgcgcgttgg ccgattcatt
     1981 aatgcagctg gcacgacagg tttcccgact ggaaagcggg cagtgagcgc aacgcaatta
     2041 atgtgagtta gctcactcat taggcacccc aggctttaca ctttatgctt ccggctcgta
     2101 tgttgtgtgg aattgtgagc ggataacaat ttcacacagg aaacagctat gaccatgatt
     2161 acgccaagcg cgcaattaac cctcactaaa gggaacaaaa gctggagctg caagcttaat
     2221 gtagtcttat gcaatactct tgtagtcttg caacatggta acgatgagtt agcaacatgc
     2281 cttacaagga gagaaaaagc accgtgcatg ccgattggtg gaagtaaggt ggtacgatcg
     2341 tgccttatta ggaaggcaac agacgggtct gacatggatt ggacgaacca ctgaattgga
     2401 ggcgtggcct gggcgggact ggggagtggc gagccctcag atcctgcata taagcagctg
     2461 ctttttgcct gtactgggtc tctctggtta gaccagatct gagcctggga gctctctggc
     2521 taactaggga acccactgct taagcctcaa taaagcttgc cttgagtgct tcaagtagtg
     2581 tgtgcccgtc tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg
     2641 tggaaaatct ctagcagtgg cgcccgaaca gggacctgaa agcgaaaggg aaaccagagc
     2701 tctctcgacg caggactcgg cttgctgaag cgcgcacggc aagaggcgag gggcggcgac
     2761 tggtgagtac gccaaaaatt ttgactagcg gaggctagaa ggagagagat gggtgcgaga
     2821 gcgtcagtat taagcggggg agaattagat cgcgatggga aaaaattcgg ttaaggccag
     2881 ggggaaagaa aaaatataaa ttaaaacata tagtatgggc aagcagggag ctagaacgat
     2941 tcgcagttaa tcctggcctg ttagaaacat cagaaggctg tagacaaata ctgggacagc
     3001 tacaaccatc ccttcagaca ggatcagaag aacttagatc attatataat acagtagcaa
     3061 ccctctattg tgtgcatcaa aggatagaga taaaagacac caaggaagct ttagacaaga
     3121 tagaggaaga gcaaaacaaa agtaagacca ccgcacagca agcggccgct gatcttcaga
     3181 cctggaggag gagatatgag ggacaattgg agaagtgaat tatataaata taaagtagta
     3241 aaaattgaac cattaggagt agcacccacc aaggcaaaga gaagagtggt gcagagagaa
     3301 aaaagagcag tgggaatagg agctttgttc cttgggttct tgggagcagc aggaagcact
     3361 atgggcgcag cctcaatgac gctgacggta caggccagac aattattgtc tggtatagtg
     3421 cagcagcaga acaatttgct gagggctatt gaggcgcaac agcatctgtt gcaactcaca
     3481 gtctggggca tcaagcagct ccaggcaaga atcctggctg tggaaagata cctaaaggat
     3541 caacagctcc tggggatttg gggttgctct ggaaaactca tttgcaccac tgctgtgcct
     3601 tggaatgcta gttggagtaa taaatctctg gaacagattg gaatcacacg acctggatgg
     3661 agtgggacag agaaattaac aattacacaa gcttaataca ctccttaatt gaagaatcgc
     3721 aaaaccagca agaaaagaat gaacaagaat tattggaatt agataaatgg gcaagtttgt
     3781 ggaattggtt taacataaca aattggctgt ggtatataaa attattcata atgatagtag
     3841 gaggcttggt aggtttaaga atagtttttg ctgtactttc tatagtgaat agagttaggc
     3901 agggatattc accattatcg tttcagaccc acctcccaac cccgagggga cccgacaggc
     3961 ccgaaggaat agaagaagaa ggtggagaga gagacagaga cagatccatt cgattagtga
     4021 acggatctcg acggtatcgg ttttaaaaga aaagggggga ttggggggta cagtgcaggg
     4081 gaaagaatag tagacataat agcaacagac atacaaacta aagaattaca aaaacaaatt
     4141 acaaaaattc aaaattttat cgtttaaacg gcgcgccggc tccggtgccc gtcagtgggc
     4201 agagcgcaca tcgcccacag tccccgagaa gttgggggga ggggtcggca attgaaccgg
     4261 tgcctagaga aggtggcgcg gggtaaactg ggaaagtgat gtcgtgtact ggctccgcct
     4321 ttttcccgag ggtgggggag aaccgtatat aagtgcagta gtcgccgtga acgttctttt
     4381 tcgcaacggg tttgccgcca gaacacaggt cccgggctgc aggaattcgc caccatggat
     4441 tacaaggatg acgacgataa ggcttcagac agcatttttg agtcatttcc ttcatatcca
     4501 cagtgcttca tgagagatgc cagcacgagc cgccgcttca cgccgccttc caccgcgctg
     4561 agccccggca agatgagcga ggcgctgccg ctgggcgccc cggatggcgg cgccgccctg
     4621 gccagcaagc tgaggagcgg cgaccgcagc atggtggagg tactagctga ccaccctggc
     4681 gagctagtgc gcaccgacag ccccaacttc ctctgctccg tgctacccac tcactggcgc
     4741 tgcaacaaga ccctgcccat cgctttcaag gtggtggcac tgggggacgt cccggatggc
     4801 actctggtca ccgtcatggc aggcaacgat gaaaactact cggcagaact gagaaatgct
     4861 accgcggcca tgaagaacca ggtagcgaga ttcaacgacc tcaggtttgt cgggcggagc
     4921 ggtagaggca agagcttcac tctgaccatc accgtcttta caaatccgcc acaagttgcc
     4981 acctaccata gagccatcaa aatcacagtg gacggccccc gagaaccccg aagacatcgg
     5041 cagaaactag atgatcagac caagcccggg agtttgtcct tttccgagcg gctcagtgaa
     5101 ttggagcagc tgcggcgcac ggccatgagg gtcagcccgc accacccagc ccccacgccc
     5161 aaccctcggg cctccttgaa ccactccact gcctttaacc ctcagcctca aagtcagatg
     5221 caggatgcca ggcagatcca gccatcccca ccgtggtcct atgaccagtc ctaccagtac
     5281 ctgggatcca tcacctcttc ctctgtccac ccagcgacac ccatttcacc cggccgtgcc
     5341 agcggcatga ccagcctctc tgcagaactt tccagtcgac tctcaacggc tccggacctg
     5401 accgccttcg gcgacccacg ccagttccct actctgccgt ccatctccga cccgcgcatg
     5461 cactacccag gcgccttcac ctactcgccg cccgtcacgt cgggcatcgg catcggcatg
     5521 tcagccatga gctcggcctc tcgctaccac acctacctgc cgccgcccta ccccggctca
     5581 tcacaggcgc aggccgggcc cttccagacc ggctcgccct cctaccatct atactacggc
     5641 gcctcggccg gttcctacca gttctccatg gtgggcggag agagatcgcc cccgcgcatc
     5701 ctgccgccct gcaccaacgc atccaccggc gccgcgctgc tcaaccccag cctccccagc
     5761 cagagcgacg tggtggagac cgagggcagc catagcaact cgcccaccaa catgcccccc
     5821 gcgcgcctgg aggaggccgt ctggcggccc tactgagcta gcctagtgcc atttgttcag
     5881 tggttcgtag ggctttcccc cactgtttgg ctttcagtta tatggatgat gtggtattgg
     5941 gggccaagtc tgtacagcat cttgagtccc tttttaccgc tgttaccaat tttcttttgt
     6001 ctttgggtat acatttaaac cctaacaaaa caaagagatg gggttactct ctaaatttta
     6061 tgggttatgt cattggatgt tatgggtcct tgccacaaga acacatcata caaaaaatca
     6121 aagaatgttt tagaaaactt cctattaaca ggcctattga ttggaaagta tgtcaacgaa
     6181 ttgtgggtct tttgggtttt gctgcccctt ttacacaatg tggttatcct gcgttgatgc
     6241 ctttgtatgc atgtattcaa tctaagcagg ctttcacttt ctcgccaact tacaaggcct
     6301 ttctgtgtaa acaatacctg aacctttacc ccgttgcccg gcaacggcca cctctgtgcc
     6361 aagtgtttgc tgacgcaacc cccactggct ggggcttggt catgggccat cagcgcatgc
     6421 gtggaacctt ttcggctcct ctgccgatcc atactgcgga actcctagcc gcttgttttg
     6481 ctcgcagcag gtctggagca aacattatcg ggactgataa ctctgttgtc ctatcccgca
     6541 aatatacatc gtttccatgg ctgctaggct gtgctgccaa ctggatcctg cgcgggacgt
     6601 cctttgttta cgtcccgtcg gcgctgaatc ctgcggacga cccttctcgg ggtcgcttgg
     6661 gactctctcg tccccttctc cgtctgccgt tccgaccgac cacggggcgc acctctcttt
     6721 acgcggactc cccgtctgtg ccttctcatc tgccggaccg tgtgcacttc gcttcacctc
     6781 tgcacgtcgc atggagacca ccgtgaacgc ccaccaaata ttgcccaagg tcttacataa
     6841 gaggactctt ggactctcag caatgtcaac gaccgacctt gaggcatact tcaaagactg
     6901 tttgtttaaa gactgggagg agttggggga ggagattagg ttaaaggtct ttgtactagg
     6961 aggctgtagg cataaattgg tctgcgcacc agcaccatgg cgcaatcact agagcggggt
     7021 acctttaaga ccaatgactt acaaggcagc tgtagatctt agccactttt taaaagaaaa
     7081 ggggggactg gaagggctaa ttcactccca acgaagacaa gatctgcttt ttgcttgtac
     7141 tgggtctctc tggttagacc agatctgagc ctgggagctc tctggctaac tagggaaccc
     7201 actgcttaag cctcaataaa gcttgccttg agtgcttcaa gtagtgtgtg cccgtctgtt
     7261 gtgtgactct ggtaactaga gatccctcag acccttttag tcagtgtgga aaatctctag
     7321 cagtagtagt tcatgtcatc ttattattca gtatttataa cttgcaaaga aatgaatatc
     7381 agagagtgag aggaacttgt ttattgcagc ttataatggt tacaaataaa gcaatagcat
     7441 cacaaatttc acaaataaag catttttttc actgcattct agttgtggtt tgtccaaact
     7501 catcaatgta tcttatcatg tctggctcta gctatcccgc ccctaactcc gcccagttcc
     7561 gcccattctc cgccccatgg ctgactaatt ttttttattt atgcagaggc cgaggccgcc
     7621 tcggcctctg agctattcca gaagtagtga ggaggctttt ttggaggcct aggcttttgc
     7681 gtcgagacgt acccaattcg ccctatagtg agtcgtatta cgcgcgctca ctggccgtcg
     7741 ttttacaacg tcgtgactgg gaaaaccctg gcgttaccca acttaatcgc cttgcagcac
     7801 atcccccttt cgccagctgg cgtaatagcg aagaggcccg caccgatcgc ccttcccaac
     7861 agttgcgcag cctgaatggc gaatggcgcg acgcgccctg tagcggcgca ttaagcgcgg
     7921 cgggtgtggt ggttacgcgc agcgtgaccg ctacacttgc cagcgcccta gcgcccgctc
     7981 ctttcgcttt cttcccttcc tttctcgcca cgttcgccgg ctttccccgt caagctctaa
     8041 atcgggggct ccctttaggg ttccgattta gtgctttacg gcacctcgac cccaaaaaac
     8101 ttgattaggg tgatggttca cgtagtgggc catcgccctg atagacggtt tttcgccctt
     8161 tgacgttgga gtccacgttc tttaatagtg gactcttgtt ccaaactgga acaacactca
     8221 accctatctc ggtctattct tttgatttat aagggatttt gccgatttcg gcctattggt
     8281 taaaaaatga gctgatttaa caaaaattta acgcgaattt taacaaaata ttaacgttta
     8341 caatttcc
//
