LOCUS       sequence-13073-e        3729 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  synthetic circular DNA
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 3729)
  AUTHORS   Burdo B, Gray J, Goetting-Minesky MP, Wittler B, Hunt M, Li T, 
            Velliquette D, Thomas J, Gentzel I, dos Santos Brito M, Mejia-Guerra
            MK, Connolly LN, Qaisi D, Li W, Casas MI, Doseff AI, Grotewold E
  TITLE     The Maize TFome--development of a transcription factor open reading 
            frame collection for functional genomics.
  JOURNAL   Plant J. 2014 Oct;80(2):356-66. doi: 10.1111/tpj.12623. Epub 2014 
            Aug 26.
  PUBMED    25053252
REFERENCE   2  (bases 1 to 3729)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; doi: "10.1111/tpj.12623";
            journalName: "Plant J"; date: "2014-10"; volume: "80"; issue: "2"; 
            pages: "356-66"
COMMENT     Sequence Label: pUT1178-HQ858719
FEATURES             Location/Qualifiers
     source          1..3729
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     protein_bind    1..100
                     /gene="mutant version of attL"
                     /label=attL1
                     /bound_moiety="LR Clonase(TM)"
                     /note="recombination site for the Gateway(R) LR reaction"
     protein_bind    complement(1286..1385)
                     /gene="mutant version of attL"
                     /label=attL2
                     /bound_moiety="LR Clonase(TM)"
                     /note="recombination site for the Gateway(R) LR reaction"
     primer_bind     complement(1402..1421)
                     /label=T7
                     /note="T7 promoter, forward primer"
     promoter        complement(1403..1421)
                     /label=T7 promoter
                     /note="promoter for bacteriophage T7 RNA polymerase"
     primer_bind     complement(1426..1442)
                     /label=M13 rev
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     complement(1426..1442)
                     /label=M13 Reverse
                     /note="In lacZ gene. Also called M13-rev"
     primer_bind     complement(1544..1563)
                     /label=pENTR-R
                     /note="pENTR vectors, reverse primer"
     CDS             1555..2364
                     /codon_start=1
                     /gene="aph(3')-Ia"
                     /product="aminoglycoside phosphotransferase"
                     /label=KanR
                     /note="confers resistance to kanamycin in bacteria or G418 
                     (Geneticin(R)) in eukaryotes"
                     /translation="MSHIQRETSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYGKP
                     DAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGKTA
                     FQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASD
                     FDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIAD
                     RYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF"
     primer_bind     complement(1622..1641)
                     /label=Kan-R
                     /note="Kanamycin resistance gene, reverse primer"
     rep_origin      2511..3099
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     3000..3019
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     primer_bind     3253..3270
                     /label=L4440
                     /note="L4440 vector, forward primer"
     terminator      complement(3429..3456)
                     /label=rrnB T2 terminator
                     /note="transcription terminator T2 from the E. coli rrnB 
                     gene"
     terminator      complement(3548..3634)
                     /gene="Escherichia coli rrnB"
                     /label=rrnB T1 terminator
                     /note="transcription terminator T1 from the E. coli rrnB 
                     gene"
     primer_bind     3683..3705
                     /label=M13/pUC Forward
                     /note="In lacZ gene"
     primer_bind     3697..3714
                     /label=M13 Forward
                     /note="In lacZ gene. Also called M13-F20 or M13 (-21) 
                     Forward"
     primer_bind     3698..3714
                     /label=M13 fwd
                     /note="common sequencing primer, one of multiple similar 
                     variants"
ORIGIN
        1 caaataatga ttttattttg actgatagtg acctgttcgt tgcaacaaat tgatgagcaa
       61 tgctttttta taatgccaac tttgtacaaa aaagcaggct ccgcggccgc ccccttcacc
      121 atggaggagg agcgctgctt caacaactgg gatctggacg ccgtcgtccg cctgggctgc
      181 cgccgccgcc tctccccgcc acggcagccc gacccgtttg cttcgcttct ccctccgacc
      241 ctgccgtcgc cgtcgccgtc gccgccgcag aaggagaagc ccgtggtgcc agcgctggct
      301 aaaggaccag agccagagcc atacgccggg tggcgctttc ctaacctcgg tgctggcggc
      361 gggcaagacg gcgacgagct catgagggcc atgttagcag tccagccttc cctgcctcag
      421 cctctgccaa cgacaacgcc aacgccaacg ccaacgcttc ccccggcagc aggagagcat
      481 cgacagtcga ctgttacagc cgtggacgtg ccgctacccc aggtgcgccc cgctccggcc
      541 gccagagcgc agccgagcgg gcggcaggtg cccggtgccg tgccaagatc caagagaagg
      601 aagaaccagg tgaagaaggt ggtctgccac gttccggcgg acggctcgtc gtcggacatg
      661 tgggcgtggc gcaagtacgg ccagaagccc atcaagggct ccccctaccc aaggggatac
      721 taccggtgca gcagctccaa ggggtgtgcg gcgcggaagc aggtcgagcg cagccgcgcg
      781 gaccccaaca ccttcatcct cacctacacc ggcgagcaca accacgcggc gccgacccac
      841 cgcaactcgc tcgccggcac cacccgaaac aagttcccct cctcggcggc gcctccgccg
      901 cctccgccgt ccgtggtggt gggcggcgcc ggtgccggcg acgcgcagca tcagcagccg
      961 agcccgagcc cggcgtccac gtcgaccgcg gggctctcgc ccacgacgcc gctgcgcacg
     1021 ccgtcgatgg aggaggagga gatggacgac gacgacgacg agctgctggt ggaggacatg
     1081 gagatggtcg gcgaggacga gctcttgttc ctcaacatcg acgccgacgc cgaagctgac
     1141 gccggggcac cactggagcc catgccctcg ctcttcgacg tcgtcgacga gcccttccta
     1201 aactcccctt ggctgacggc caccagcagc gccggcgagc cagccacagg ggcagccggc
     1261 gccaggagca agggtgggcg cgccgaccca gctttcttgt acaaagttgg cattataaga
     1321 aagcattgct tatcaatttg ttgcaacgaa caggtcacta tcagtcaaaa taaaatcatt
     1381 atttgccatc cagctgatat cccctatagt gagtcgtatt acatggtcat agctgtttcc
     1441 tggcagctct ggcccgtgtc tcaaaatctc tgatgttaca ttgcacaaga taaaaatata
     1501 tcatcatgaa caataaaact gtctgcttac ataaacagta atacaagggg tgttatgagc
     1561 catattcaac gggaaacgtc gaggccgcga ttaaattcca acatggatgc tgatttatat
     1621 gggtataaat gggctcgcga taatgtcggg caatcaggtg cgacaatcta tcgcttgtat
     1681 gggaagcccg atgcgccaga gttgtttctg aaacatggca aaggtagcgt tgccaatgat
     1741 gttacagatg agatggtcag actaaactgg ctgacggaat ttatgcctct tccgaccatc
     1801 aagcatttta tccgtactcc tgatgatgca tggttactca ccactgcgat ccccggaaaa
     1861 acagcattcc aggtattaga agaatatcct gattcaggtg aaaatattgt tgatgcgctg
     1921 gcagtgttcc tgcgccggtt gcattcgatt cctgtttgta attgtccttt taacagcgat
     1981 cgcgtatttc gtctcgctca ggcgcaatca cgaatgaata acggtttggt tgatgcgagt
     2041 gattttgatg acgagcgtaa tggctggcct gttgaacaag tctggaaaga aatgcataaa
     2101 cttttgccat tctcaccgga ttcagtcgtc actcatggtg atttctcact tgataacctt
     2161 atttttgacg aggggaaatt aataggttgt attgatgttg gacgagtcgg aatcgcagac
     2221 cgataccagg atcttgccat cctatggaac tgcctcggtg agttttctcc ttcattacag
     2281 aaacggcttt ttcaaaaata tggtattgat aatcctgata tgaataaatt gcagtttcat
     2341 ttgatgctcg atgagttttt ctaatcagaa ttggttaatt ggttgtaaca ctggcagagc
     2401 attacgctga cttgacggga cggcgcaagc tcatgaccaa aatcccttaa cgtgagttac
     2461 gcgtcgttcc actgagcgtc agaccccgta gaaaagatca aaggatcttc ttgagatcct
     2521 ttttttctgc gcgtaatctg ctgcttgcaa acaaaaaaac caccgctacc agcggtggtt
     2581 tgtttgccgg atcaagagct accaactctt tttccgaagg taactggctt cagcagagcg
     2641 cagataccaa atactgtcct tctagtgtag ccgtagttag gccaccactt caagaactct
     2701 gtagcaccgc ctacatacct cgctctgcta atcctgttac cagtggctgc tgccagtggc
     2761 gataagtcgt gtcttaccgg gttggactca agacgatagt taccggataa ggcgcagcgg
     2821 tcgggctgaa cggggggttc gtgcacacag cccagcttgg agcgaacgac ctacaccgaa
     2881 ctgagatacc tacagcgtga gcattgagaa agcgccacgc ttcccgaagg gagaaaggcg
     2941 gacaggtatc cggtaagcgg cagggtcgga acaggagagc gcacgaggga gcttccaggg
     3001 ggaaacgcct ggtatcttta tagtcctgtc gggtttcgcc acctctgact tgagcgtcga
     3061 tttttgtgat gctcgtcagg ggggcggagc ctatggaaaa acgccagcaa cgcggccttt
     3121 ttacggttcc tggccttttg ctggcctttt gctcacatgt tctttcctgc gttatcccct
     3181 gattctgtgg ataaccgtat taccgccttt gagtgagctg ataccgctcg ccgcagccga
     3241 acgaccgagc gcagcgagtc agtgagcgag gaagcggaag agcgcccaat acgcaaaccg
     3301 cctctccccg cgcgttggcc gattcattaa tgcagctggc acgacaggtt tcccgactgg
     3361 aaagcgggca gtgagcgcaa cgcaattaat acgcgtaccg ctagccagga agagtttgta
     3421 gaaacgcaaa aaggccatcc gtcaggatgg ccttctgctt agtttgatgc ctggcagttt
     3481 atggcgggcg tcctgcccgc caccctccgg gccgttgctt cacaacgttc aaatccgctc
     3541 ccggcggatt tgtcctactc aggagagcgt tcaccgacaa acaacagata aaacgaaagg
     3601 cccagtcttc cgactgagcc tttcgtttta tttgatgcct ggcagttccc tactctcgcg
     3661 ttaacgctag catggatgtt ttcccagtca cgacgttgta aaacgacggc cagtcttaag
     3721 ctcgggccc
//
