LOCUS       sequence-13096-e        3216 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  synthetic circular DNA
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 3216)
  AUTHORS   Burdo B, Gray J, Goetting-Minesky MP, Wittler B, Hunt M, Li T, 
            Velliquette D, Thomas J, Gentzel I, dos Santos Brito M, Mejia-Guerra
            MK, Connolly LN, Qaisi D, Li W, Casas MI, Doseff AI, Grotewold E
  TITLE     The Maize TFome--development of a transcription factor open reading 
            frame collection for functional genomics.
  JOURNAL   Plant J. 2014 Oct;80(2):356-66. doi: 10.1111/tpj.12623. Epub 2014 
            Aug 26.
  PUBMED    25053252
REFERENCE   2  (bases 1 to 3216)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; doi: "10.1111/tpj.12623";
            journalName: "Plant J"; date: "2014-10"; volume: "80"; issue: "2"; 
            pages: "356-66"
COMMENT     Sequence Label: pUT1437-HQ858739
FEATURES             Location/Qualifiers
     source          1..3216
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     protein_bind    1..100
                     /gene="mutant version of attL"
                     /label=attL1
                     /bound_moiety="LR Clonase(TM)"
                     /note="recombination site for the Gateway(R) LR reaction"
     RBS             112..132
                     /note="efficient ribosome binding site from bacteriophage 
                     T7 gene 10 (Olins and Rangwala, 1989)"
     protein_bind    complement(773..872)
                     /gene="mutant version of attL"
                     /label=attL2
                     /bound_moiety="LR Clonase(TM)"
                     /note="recombination site for the Gateway(R) LR reaction"
     primer_bind     complement(889..908)
                     /label=T7
                     /note="T7 promoter, forward primer"
     promoter        complement(890..908)
                     /label=T7 promoter
                     /note="promoter for bacteriophage T7 RNA polymerase"
     primer_bind     complement(913..929)
                     /label=M13 rev
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     complement(913..929)
                     /label=M13 Reverse
                     /note="In lacZ gene. Also called M13-rev"
     primer_bind     complement(1031..1050)
                     /label=pENTR-R
                     /note="pENTR vectors, reverse primer"
     CDS             1042..1851
                     /codon_start=1
                     /gene="aph(3')-Ia"
                     /product="aminoglycoside phosphotransferase"
                     /label=KanR
                     /note="confers resistance to kanamycin in bacteria or G418 
                     (Geneticin(R)) in eukaryotes"
                     /translation="MSHIQRETSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYGKP
                     DAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGKTA
                     FQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASD
                     FDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIAD
                     RYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF"
     primer_bind     complement(1109..1128)
                     /label=Kan-R
                     /note="Kanamycin resistance gene, reverse primer"
     rep_origin      1998..2586
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     2487..2506
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     primer_bind     2740..2757
                     /label=L4440
                     /note="L4440 vector, forward primer"
     terminator      complement(2916..2943)
                     /label=rrnB T2 terminator
                     /note="transcription terminator T2 from the E. coli rrnB 
                     gene"
     terminator      complement(3035..3121)
                     /gene="Escherichia coli rrnB"
                     /label=rrnB T1 terminator
                     /note="transcription terminator T1 from the E. coli rrnB 
                     gene"
     primer_bind     3170..3192
                     /label=M13/pUC Forward
                     /note="In lacZ gene"
     primer_bind     3184..3201
                     /label=M13 Forward
                     /note="In lacZ gene. Also called M13-F20 or M13 (-21) 
                     Forward"
     primer_bind     3185..3201
                     /label=M13 fwd
                     /note="common sequencing primer, one of multiple similar 
                     variants"
ORIGIN
        1 caaataatga ttttattttg actgatagtg acctgttcgt tgcaacaaat tgatgagcaa
       61 tgctttttta taatgccaac tttgtacaaa aaagcaggct ccgcggccgc cttgtttaac
      121 tttaagaagg agcccttcac catggatatg gtttcgcagt ccgagcacct gtgctacgtc
      181 cgctgcacct actgcaacac cgtgctcgcg gttggggttc catgcaagag gctgatggac
      241 acggtgactg tcaagtgcgg ccactgcaac aacctctcct acctcagtcc acggcccccc
      301 atggtgcagc cgctctcgcc gactgatcac cctttggggc cattccagtg tcagggaccc
      361 tgcaacgact gcaggaggaa ccaaccgctg ccgctggctt cgccgtcatc aactgagcta
      421 agcccgagaa tgcccttcgt agtcaagccc ccggagaaga aacaccgcct cccatctgct
      481 tataatcgct tcatgaggga ggagattcag cgcatcaaag ctgcgaagcc agatatccct
      541 cacagggagg ccttcagcat ggctgccaag aattgggcaa agtgtgaccc gcgctgctcg
      601 acggctgcct ctaccgaaac ttctaacagc gctcctgctg agccnagagt tgtgcccact
      661 ccccagttaa ctgagccacg ctttgacctg gaggataggg ccaaggggca agtcattgag
      721 agcttcgaca tnttcaagca tattgagcgc agcatcaagg gtgggcgcgc cgacccagct
      781 ttcttgtaca aagttggcat tataagaaag cattgcttat caatttgttg caacgaacag
      841 gtcactatca gtcaaaataa aatcattatt tgccatccag ctgatatccc ctatagtgag
      901 tcgtattaca tggtcatagc tgtttcctgg cagctctggc ccgtgtctca aaatctctga
      961 tgttacattg cacaagataa aaatatatca tcatgaacaa taaaactgtc tgcttacata
     1021 aacagtaata caaggggtgt tatgagccat attcaacggg aaacgtcgag gccgcgatta
     1081 aattccaaca tggatgctga tttatatggg tataaatggg ctcgcgataa tgtcgggcaa
     1141 tcaggtgcga caatctatcg cttgtatggg aagcccgatg cgccagagtt gtttctgaaa
     1201 catggcaaag gtagcgttgc caatgatgtt acagatgaga tggtcagact aaactggctg
     1261 acggaattta tgcctcttcc gaccatcaag cattttatcc gtactcctga tgatgcatgg
     1321 ttactcacca ctgcgatccc cggaaaaaca gcattccagg tattagaaga atatcctgat
     1381 tcaggtgaaa atattgttga tgcgctggca gtgttcctgc gccggttgca ttcgattcct
     1441 gtttgtaatt gtccttttaa cagcgatcgc gtatttcgtc tcgctcaggc gcaatcacga
     1501 atgaataacg gtttggttga tgcgagtgat tttgatgacg agcgtaatgg ctggcctgtt
     1561 gaacaagtct ggaaagaaat gcataaactt ttgccattct caccggattc agtcgtcact
     1621 catggtgatt tctcacttga taaccttatt tttgacgagg ggaaattaat aggttgtatt
     1681 gatgttggac gagtcggaat cgcagaccga taccaggatc ttgccatcct atggaactgc
     1741 ctcggtgagt tttctccttc attacagaaa cggctttttc aaaaatatgg tattgataat
     1801 cctgatatga ataaattgca gtttcatttg atgctcgatg agtttttcta atcagaattg
     1861 gttaattggt tgtaacactg gcagagcatt acgctgactt gacgggacgg cgcaagctca
     1921 tgaccaaaat cccttaacgt gagttacgcg tcgttccact gagcgtcaga ccccgtagaa
     1981 aagatcaaag gatcttcttg agatcctttt tttctgcgcg taatctgctg cttgcaaaca
     2041 aaaaaaccac cgctaccagc ggtggtttgt ttgccggatc aagagctacc aactcttttt
     2101 ccgaaggtaa ctggcttcag cagagcgcag ataccaaata ctgtccttct agtgtagccg
     2161 tagttaggcc accacttcaa gaactctgta gcaccgccta catacctcgc tctgctaatc
     2221 ctgttaccag tggctgctgc cagtggcgat aagtcgtgtc ttaccgggtt ggactcaaga
     2281 cgatagttac cggataaggc gcagcggtcg ggctgaacgg ggggttcgtg cacacagccc
     2341 agcttggagc gaacgaccta caccgaactg agatacctac agcgtgagca ttgagaaagc
     2401 gccacgcttc ccgaagggag aaaggcggac aggtatccgg taagcggcag ggtcggaaca
     2461 ggagagcgca cgagggagct tccaggggga aacgcctggt atctttatag tcctgtcggg
     2521 tttcgccacc tctgacttga gcgtcgattt ttgtgatgct cgtcaggggg gcggagccta
     2581 tggaaaaacg ccagcaacgc ggccttttta cggttcctgg ccttttgctg gccttttgct
     2641 cacatgttct ttcctgcgtt atcccctgat tctgtggata accgtattac cgcctttgag
     2701 tgagctgata ccgctcgccg cagccgaacg accgagcgca gcgagtcagt gagcgaggaa
     2761 gcggaagagc gcccaatacg caaaccgcct ctccccgcgc gttggccgat tcattaatgc
     2821 agctggcacg acaggtttcc cgactggaaa gcgggcagtg agcgcaacgc aattaatacg
     2881 cgtaccgcta gccaggaaga gtttgtagaa acgcaaaaag gccatccgtc aggatggcct
     2941 tctgcttagt ttgatgcctg gcagtttatg gcgggcgtcc tgcccgccac cctccgggcc
     3001 gttgcttcac aacgttcaaa tccgctcccg gcggatttgt cctactcagg agagcgttca
     3061 ccgacaaaca acagataaaa cgaaaggccc agtcttccga ctgagccttt cgttttattt
     3121 gatgcctggc agttccctac tctcgcgtta acgctagcat ggatgttttc ccagtcacga
     3181 cgttgtaaaa cgacggccag tcttaagctc gggccc
//
