LOCUS       sequence-13194-e        3388 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  synthetic circular DNA
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 3388)
  AUTHORS   Yilmaz A, Nishiyama MY Jr, Fuentes BG, Souza GM, Janies D, Gray J, 
            Grotewold E
  TITLE     GRASSIUS: a platform for comparative regulatory genomics across the 
            grasses.
  JOURNAL   Plant Physiol. 2009 Jan;149(1):171-80. doi: 10.1104/pp.108.128579. 
            Epub 2008 Nov 5.
  PUBMED    18987217
REFERENCE   2  (bases 1 to 3388)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; doi: 
            "10.1104/pp.108.128579"; journalName: "Plant Physiol"; date: 
            "2009-01"; volume: "149"; issue: "1"; pages: "171-80"
COMMENT     Sequence Label: pUT1505-HQ858838
FEATURES             Location/Qualifiers
     source          1..3388
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     protein_bind    1..100
                     /gene="mutant version of attL"
                     /label=attL1
                     /bound_moiety="LR Clonase(TM)"
                     /note="recombination site for the Gateway(R) LR reaction"
     protein_bind    complement(945..1044)
                     /gene="mutant version of attL"
                     /label=attL2
                     /bound_moiety="LR Clonase(TM)"
                     /note="recombination site for the Gateway(R) LR reaction"
     primer_bind     complement(1061..1080)
                     /label=T7
                     /note="T7 promoter, forward primer"
     promoter        complement(1062..1080)
                     /label=T7 promoter
                     /note="promoter for bacteriophage T7 RNA polymerase"
     primer_bind     complement(1085..1101)
                     /label=M13 rev
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     complement(1085..1101)
                     /label=M13 Reverse
                     /note="In lacZ gene. Also called M13-rev"
     primer_bind     complement(1203..1222)
                     /label=pENTR-R
                     /note="pENTR vectors, reverse primer"
     CDS             1214..2023
                     /codon_start=1
                     /gene="aph(3')-Ia"
                     /product="aminoglycoside phosphotransferase"
                     /label=KanR
                     /note="confers resistance to kanamycin in bacteria or G418 
                     (Geneticin(R)) in eukaryotes"
                     /translation="MSHIQRETSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYGKP
                     DAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGKTA
                     FQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASD
                     FDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIAD
                     RYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF"
     primer_bind     complement(1281..1300)
                     /label=Kan-R
                     /note="Kanamycin resistance gene, reverse primer"
     rep_origin      2170..2758
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     2659..2678
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     primer_bind     2912..2929
                     /label=L4440
                     /note="L4440 vector, forward primer"
     terminator      complement(3088..3115)
                     /label=rrnB T2 terminator
                     /note="transcription terminator T2 from the E. coli rrnB 
                     gene"
     terminator      complement(3207..3293)
                     /gene="Escherichia coli rrnB"
                     /label=rrnB T1 terminator
                     /note="transcription terminator T1 from the E. coli rrnB 
                     gene"
     primer_bind     3342..3364
                     /label=M13/pUC Forward
                     /note="In lacZ gene"
     primer_bind     3356..3373
                     /label=M13 Forward
                     /note="In lacZ gene. Also called M13-F20 or M13 (-21) 
                     Forward"
     primer_bind     3357..3373
                     /label=M13 fwd
                     /note="common sequencing primer, one of multiple similar 
                     variants"
ORIGIN
        1 caaataatga ttttattttg actgatagtg acctgttcgt tgcaacaaat tgatgagcaa
       61 tgctttttta taatgccaac tttgtacaaa aaagcaggct ccgcggccgc ccccttcacc
      121 atgtcgagcg cgtcgtccat ggaagcgctc cacgccgcgg tgctcaagga ggagcagcag
      181 cagcacgagg tggaggaggc gacggtcgtg acgagcagca gcgccacgag cggggaggag
      241 ggcggacacc tgccgcaggg gtgggcgaag cggaagcggt cgcgccgcca gcgatcggag
      301 gaggagaacc tcgcgctctg cctcctcatg ctcgcccgcg gcggccacca ccgcgtccag
      361 gcgccgcctc cgctctcggc ttcggcgccc ccgccggcag gtgcggagtt caagtgctcc
      421 gtctgcggca agtccttcag ctcctaccag gcgctcggcg gccacaagac gagccaccgg
      481 gtcaagctgc cgactccgcc cgcagctccc gtcttggctc ccgcccccgt cgccgccttg
      541 ctgccttccg ccgaggaccg cgagccagcc acgtcatcca ccgccgcgtc ctccgacggc
      601 atgaccaaca gagtccacag gtgttccatc tgccagaagg agttccccac cgggcaggcg
      661 ctcggcgggc acaagaggaa gcactacgac ggtggcgtag gcgccggcgc cggcgcatct
      721 tcaaccgagc tcctggccac ggtggccgcc gagtccgagg tgggaagctc cggcaacggc
      781 cagtccgcca cccgggcgtt cgacctcaac ctcccggccg tgccggagtt cgtgtggcgg
      841 ccgtgctcca agggcaagaa gatgtgggac gaggaggagg gggtccagag ccccctcgcc
      901 ttcaagaagc ccccggcttc tcaccgcgaa gggtgggcgc gccgacccag ctttcttgta
      961 caaagttggc attataagaa agcattgctt atcaatttgt tgcaacgaac aggtcactat
     1021 cagtcaaaat aaaatcatta tttgccatcc agctgatatc ccctatagtg agtcgtatta
     1081 catggtcata gctgtttcct ggcagctctg gcccgtgtct caaaatctct gatgttacat
     1141 tgcacaagat aaaaatatat catcatgaac aataaaactg tctgcttaca taaacagtaa
     1201 tacaaggggt gttatgagcc atattcaacg ggaaacgtcg aggccgcgat taaattccaa
     1261 catggatgct gatttatatg ggtataaatg ggctcgcgat aatgtcgggc aatcaggtgc
     1321 gacaatctat cgcttgtatg ggaagcccga tgcgccagag ttgtttctga aacatggcaa
     1381 aggtagcgtt gccaatgatg ttacagatga gatggtcaga ctaaactggc tgacggaatt
     1441 tatgcctctt ccgaccatca agcattttat ccgtactcct gatgatgcat ggttactcac
     1501 cactgcgatc cccggaaaaa cagcattcca ggtattagaa gaatatcctg attcaggtga
     1561 aaatattgtt gatgcgctgg cagtgttcct gcgccggttg cattcgattc ctgtttgtaa
     1621 ttgtcctttt aacagcgatc gcgtatttcg tctcgctcag gcgcaatcac gaatgaataa
     1681 cggtttggtt gatgcgagtg attttgatga cgagcgtaat ggctggcctg ttgaacaagt
     1741 ctggaaagaa atgcataaac ttttgccatt ctcaccggat tcagtcgtca ctcatggtga
     1801 tttctcactt gataacctta tttttgacga ggggaaatta ataggttgta ttgatgttgg
     1861 acgagtcgga atcgcagacc gataccagga tcttgccatc ctatggaact gcctcggtga
     1921 gttttctcct tcattacaga aacggctttt tcaaaaatat ggtattgata atcctgatat
     1981 gaataaattg cagtttcatt tgatgctcga tgagtttttc taatcagaat tggttaattg
     2041 gttgtaacac tggcagagca ttacgctgac ttgacgggac ggcgcaagct catgaccaaa
     2101 atcccttaac gtgagttacg cgtcgttcca ctgagcgtca gaccccgtag aaaagatcaa
     2161 aggatcttct tgagatcctt tttttctgcg cgtaatctgc tgcttgcaaa caaaaaaacc
     2221 accgctacca gcggtggttt gtttgccgga tcaagagcta ccaactcttt ttccgaaggt
     2281 aactggcttc agcagagcgc agataccaaa tactgtcctt ctagtgtagc cgtagttagg
     2341 ccaccacttc aagaactctg tagcaccgcc tacatacctc gctctgctaa tcctgttacc
     2401 agtggctgct gccagtggcg ataagtcgtg tcttaccggg ttggactcaa gacgatagtt
     2461 accggataag gcgcagcggt cgggctgaac ggggggttcg tgcacacagc ccagcttgga
     2521 gcgaacgacc tacaccgaac tgagatacct acagcgtgag cattgagaaa gcgccacgct
     2581 tcccgaaggg agaaaggcgg acaggtatcc ggtaagcggc agggtcggaa caggagagcg
     2641 cacgagggag cttccagggg gaaacgcctg gtatctttat agtcctgtcg ggtttcgcca
     2701 cctctgactt gagcgtcgat ttttgtgatg ctcgtcaggg gggcggagcc tatggaaaaa
     2761 cgccagcaac gcggcctttt tacggttcct ggccttttgc tggccttttg ctcacatgtt
     2821 ctttcctgcg ttatcccctg attctgtgga taaccgtatt accgcctttg agtgagctga
     2881 taccgctcgc cgcagccgaa cgaccgagcg cagcgagtca gtgagcgagg aagcggaaga
     2941 gcgcccaata cgcaaaccgc ctctccccgc gcgttggccg attcattaat gcagctggca
     3001 cgacaggttt cccgactgga aagcgggcag tgagcgcaac gcaattaata cgcgtaccgc
     3061 tagccaggaa gagtttgtag aaacgcaaaa aggccatccg tcaggatggc cttctgctta
     3121 gtttgatgcc tggcagttta tggcgggcgt cctgcccgcc accctccggg ccgttgcttc
     3181 acaacgttca aatccgctcc cggcggattt gtcctactca ggagagcgtt caccgacaaa
     3241 caacagataa aacgaaaggc ccagtcttcc gactgagcct ttcgttttat ttgatgcctg
     3301 gcagttccct actctcgcgt taacgctagc atggatgttt tcccagtcac gacgttgtaa
     3361 aacgacggcc agtcttaagc tcgggccc
//
