LOCUS       sequence-173178-        5670 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  Localization: Lysosomes, Excitation: 590, Emission: 649.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 5670)
  TITLE     Davidson Red fluorescent proteins
REFERENCE   2  (bases 1 to 5670)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"
COMMENT     Sequence Label: mPlum-CathespinB-6
FEATURES             Location/Qualifiers
     source          1..5670
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     CDS             1018..1698
                     /codon_start=1
                     /product="far-red monomeric derivative of DsRed fluorescent
                     protein (Wang et al., 2004)"
                     /label=mPlum
                     /note="mammalian codon-optimized"
                     /translation="MVSKGEEVIKEFMRFKEHMEGSVNGHEFEIEGEGEGRPYEGTQTA
                     RLKVTKGGPLPFAWDILSPQIMYGSKAYVKHPADIPDYLKLSFPEGFKWERVMNFEDGG
                     VVTVTQDSSLQDGEFIYKVKVRGTNFPSDGPVMQKKTMGWEASSERMYPEDGALKGEMK
                     MRLRLKDGGHYDAEVKTTYMAKKPVQLPGAYKTDIKLDITSHNEDYTIVEQYERAEGRH
                     STGA"
     primer_bind     1419..1438
                     /label=mCherry-F
                     /note="mCherry, forward primer"
     primer_bind     1613..1636
                     /label=DsRed1-C
                     /note="DsRed1, forward primer"
     polyA_signal    1820..1941
                     /label=SV40 poly(A) signal
                     /note="SV40 polyadenylation signal"
     primer_bind     complement(1857..1876)
                     /label=SV40pA-R
                     /note="SV40 polyA, reverse primer"
     primer_bind     1911..1930
                     /label=EBV-rev
                     /note="SV40 polyA terminator, reverse primer"
     rep_origin      complement(1948..2403)
                     /direction=LEFT
                     /label=f1 ori
                     /note="f1 bacteriophage origin of replication; arrow 
                     indicates direction of (+) strand synthesis"
     primer_bind     complement(2085..2106)
                     /label=F1ori-F
                     /note="F1 origin, forward primer"
     primer_bind     2297..2316
                     /label=F1ori-R
                     /note="F1 origin, reverse primer"
     promoter        2430..2534
                     /gene="bla"
                     /label=AmpR promoter
     promoter        2536..2893
                     /label=SV40 promoter
                     /note="SV40 enhancer and early promoter"
     enhancer        2536..2727
                     /label=SV40 enhancer
                     /note="enhancer for the SV40 early promoter (Herr, 1993)"
     primer_bind     complement(2559..2579)
                     /label=pBABE 3'
                     /note="SV40 enhancer, reverse primer for pBABE vectors"
     rep_origin      2744..2879
                     /label=SV40 ori
                     /note="SV40 origin of replication"
     CDS             2928..3722
                     /codon_start=1
                     /product="aminoglycoside phosphotransferase"
                     /label=NeoR/KanR
                     /note="confers resistance to neomycin, kanamycin, and G418 
                     (Geneticin(R))"
                     /translation="MIEQDGLHAGSPAAWVERLFGYDWAQQTIGCSDAAVFRLSAQGRP
                     VLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLS
                     SHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQ
                     GLAPAELFARLKASMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIA
                     LATRDIAEELGGEWADRFLVLYGIAAPDSQRIAFYRLLDEFF"
     CDS             2928..3722
                     /codon_start=1
                     /gene="aph(3')-II (or nptII)"
                     /product="aminoglycoside phosphotransferase from Tn5"
                     /label=NeoR/KanR
                     /note="confers resistance to neomycin, kanamycin, and G418 
                     (Geneticin(R))"
                     /translation="MIEQDGLHAGSPAAWVERLFGYDWAQQTIGCSDAAVFRLSAQGRP
                     VLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLS
                     SHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQ
                     GLAPAELFARLKASMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIA
                     LATRDIAEELGGEWADRFLVLYGIAAPDSQRIAFYRLLDEFF"
     primer_bind     complement(2982..3001)
                     /label=Neo-R
                     /note="Neomycin resistance gene, reverse primer"
     primer_bind     3592..3611
                     /label=Neo-F
                     /note="Neomycin resistance gene, forward primer"
     primer_bind     complement(3910..3929)
                     /label=TK-pA-R
                     /note="Thymidine kinase polyA, reverse primer"
     polyA_signal    3954..4001
                     /label=HSV TK poly(A) signal
                     /note="herpes simplex virus thymidine kinase 
                     polyadenylation signal (Cole and Stacy, 1985)"
     rep_origin      4330..4918
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     4819..4838
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     enhancer        5093..5396
                     /label=CMV enhancer
                     /note="human cytomegalovirus immediate early enhancer"
     promoter        5397..5600
                     /label=CMV promoter
                     /note="human cytomegalovirus (CMV) immediate early 
                     promoter"
     primer_bind     5551..5571
                     /label=CMV-F
                     /note="Human CMV immediate early promoter, forward primer"
ORIGIN
        1 atgtggtggt ccttgatccc tctctcttgc ctgctggcac tgaccagtgc ccatgacaag
       61 ccttcctttc acccactgtc ggacgacatg attaactata tcaacaaaca gaatacaaca
      121 tggcaggctg gacgcaactt ctacaatgtt gacataagct atctgaagaa gctgtgtgga
      181 actgtcctgg gtggacccaa gctgccggaa agggttgggt tcagcgagga cataaatcta
      241 cctgaatcct ttgatgcacg ggaacagtgg tccaattgcc cgaccatcgc acagatcaga
      301 gaccaggggt cctgtggctc ttgttgggca tttggggcag tggaagccat gtctgaccga
      361 atctgcattc acaccaatgg ccgagtcaat gtggaggtgt ctgctgagga cctgcttacc
      421 tgctgtggta tccagtgtgg ggatggctgt aatggtggct atccctctgg agcatggaac
      481 ttctggacta gaaaaggcct ggtttctggt ggagtataca attctcatat aggctgctta
      541 ccctacacca tccctccctg tgaacaccat gtcaatggct cccgtccccc atgcactgga
      601 gaaggagata ctcccaagtg caacaagatg tgtgaggctg gctactccac atcctacaag
      661 gaagataagc actatgggta cacttcctac agtgtgtctg acagcgagaa ggagatcatg
      721 gcggaaatct acaaaaatgg cccagtggag ggtgctttta ctgtgttttc tgacttcttg
      781 acttacaaat caggcgtata caagcatgaa gccggtgatg tgatgggagg ccatgccatc
      841 cgcattctgg gctggggaat agagaatgga gtaccctact ggctggtagc aaactcctgg
      901 aacgttgact ggggtgataa tggtttcttt aaaatcctca gaggagagaa ccactgtgga
      961 attgaatcag aaatcgtggc tggaatccca cgcactcagg atccaccggt ggctaccatg
     1021 gtgagcaagg gcgaggaggt catcaaggag ttcatgcgct tcaaggagca catggagggc
     1081 tccgtgaacg gccacgagtt cgagatcgag ggcgagggcg agggccgccc ctacgagggc
     1141 acccagaccg ccaggctgaa ggtgaccaag ggtggccccc tgcccttcgc ctgggacatc
     1201 ctgtcccctc agatcatgta cggctccaag gcctacgtga agcaccccgc cgacatcccc
     1261 gactacttga agctgtcctt ccccgagggc ttcaagtggg agcgcgtgat gaacttcgag
     1321 gacggcggcg tggtgaccgt gacccaggac tcctccctgc aggacggcga gttcatctac
     1381 aaggtgaagg tgcgcggcac caacttcccc tccgacggcc ccgtaatgca gaagaagacc
     1441 atgggctggg aggcctcctc cgagcggatg taccccgagg acggcgccct gaagggcgag
     1501 atgaagatga ggctgaggct gaaggacggc ggccactacg acgccgaggt caagaccacc
     1561 tacatggcca agaagcccgt gcagctgccc ggcgcctaca agaccgacat caagctggac
     1621 atcacctccc acaacgagga ctacaccatc gtggaacagt acgagcgcgc cgagggccgc
     1681 cactccaccg gcgcctaagc ggccgcgact ctagatcata atcagccata ccacatttgt
     1741 agaggtttta cttgctttaa aaaacctccc acacctcccc ctgaacctga aacataaaat
     1801 gaatgcaatt gttgttgtta acttgtttat tgcagcttat aatggttaca aataaagcaa
     1861 tagcatcaca aatttcacaa ataaagcatt tttttcactg cattctagtt gtggtttgtc
     1921 caaactcatc aatgtatctt aaggcgtaaa ttgtaagcgt taatattttg ttaaaattcg
     1981 cgttaaattt ttgttaaatc agctcatttt ttaaccaata ggccgaaatc ggcaaaatcc
     2041 cttataaatc aaaagaatag accgagatag ggttgagtgt tgttccagtt tggaacaaga
     2101 gtccactatt aaagaacgtg gactccaacg tcaaagggcg aaaaaccgtc tatcagggcg
     2161 atggcccact acgtgaacca tcaccctaat caagtttttt ggggtcgagg tgccgtaaag
     2221 cactaaatcg gaaccctaaa gggagccccc gatttagagc ttgacgggga aagccggcga
     2281 acgtggcgag aaaggaaggg aagaaagcga aaggagcggg cgctagggcg ctggcaagtg
     2341 tagcggtcac gctgcgcgta accaccacac ccgccgcgct taatgcgccg ctacagggcg
     2401 cgtcaggtgg cacttttcgg ggaaatgtgc gcggaacccc tatttgttta tttttctaaa
     2461 tacattcaaa tatgtatccg ctcatgagac aataaccctg ataaatgctt caataatatt
     2521 gaaaaaggaa gagtcctgag gcggaaagaa ccagctgtgg aatgtgtgtc agttagggtg
     2581 tggaaagtcc ccaggctccc cagcaggcag aagtatgcaa agcatgcatc tcaattagtc
     2641 agcaaccagg tgtggaaagt ccccaggctc cccagcaggc agaagtatgc aaagcatgca
     2701 tctcaattag tcagcaacca tagtcccgcc cctaactccg cccatcccgc ccctaactcc
     2761 gcccagttcc gcccattctc cgccccatgg ctgactaatt ttttttattt atgcagaggc
     2821 cgaggccgcc tcggcctctg agctattcca gaagtagtga ggaggctttt ttggaggcct
     2881 aggcttttgc aaagatcgat caagagacag gatgaggatc gtttcgcatg attgaacaag
     2941 atggattgca cgcaggttct ccggccgctt gggtggagag gctattcggc tatgactggg
     3001 cacaacagac aatcggctgc tctgatgccg ccgtgttccg gctgtcagcg caggggcgcc
     3061 cggttctttt tgtcaagacc gacctgtccg gtgccctgaa tgaactgcaa gacgaggcag
     3121 cgcggctatc gtggctggcc acgacgggcg ttccttgcgc agctgtgctc gacgttgtca
     3181 ctgaagcggg aagggactgg ctgctattgg gcgaagtgcc ggggcaggat ctcctgtcat
     3241 ctcaccttgc tcctgccgag aaagtatcca tcatggctga tgcaatgcgg cggctgcata
     3301 cgcttgatcc ggctacctgc ccattcgacc accaagcgaa acatcgcatc gagcgagcac
     3361 gtactcggat ggaagccggt cttgtcgatc aggatgatct ggacgaagag catcaggggc
     3421 tcgcgccagc cgaactgttc gccaggctca aggcgagcat gcccgacggc gaggatctcg
     3481 tcgtgaccca tggcgatgcc tgcttgccga atatcatggt ggaaaatggc cgcttttctg
     3541 gattcatcga ctgtggccgg ctgggtgtgg cggaccgcta tcaggacata gcgttggcta
     3601 cccgtgatat tgctgaagag cttggcggcg aatgggctga ccgcttcctc gtgctttacg
     3661 gtatcgccgc tcccgattcg cagcgcatcg ccttctatcg ccttcttgac gagttcttct
     3721 gagcgggact ctggggttcg aaatgaccga ccaagcgacg cccaacctgc catcacgaga
     3781 tttcgattcc accgccgcct tctatgaaag gttgggcttc ggaatcgttt tccgggacgc
     3841 cggctggatg atcctccagc gcggggatct catgctggag ttcttcgccc accctagggg
     3901 gaggctaact gaaacacgga aggagacaat accggaagga acccgcgcta tgacggcaat
     3961 aaaaagacag aataaaacgc acggtgttgg gtcgtttgtt cataaacgcg gggttcggtc
     4021 ccagggctgg cactctgtcg ataccccacc gagaccccat tggggccaat acgcccgcgt
     4081 ttcttccttt tccccacccc accccccaag ttcgggtgaa ggcccagggc tcgcagccaa
     4141 cgtcggggcg gcaggccctg ccatagcctc aggttactca tatatacttt agattgattt
     4201 aaaacttcat ttttaattta aaaggatcta ggtgaagatc ctttttgata atctcatgac
     4261 caaaatccct taacgtgagt tttcgttcca ctgagcgtca gaccccgtag aaaagatcaa
     4321 aggatcttct tgagatcctt tttttctgcg cgtaatctgc tgcttgcaaa caaaaaaacc
     4381 accgctacca gcggtggttt gtttgccgga tcaagagcta ccaactcttt ttccgaaggt
     4441 aactggcttc agcagagcgc agataccaaa tactgttctt ctagtgtagc cgtagttagg
     4501 ccaccacttc aagaactctg tagcaccgcc tacatacctc gctctgctaa tcctgttacc
     4561 agtggctgct gccagtggcg ataagtcgtg tcttaccggg ttggactcaa gacgatagtt
     4621 accggataag gcgcagcggt cgggctgaac ggggggttcg tgcacacagc ccagcttgga
     4681 gcgaacgacc tacaccgaac tgagatacct acagcgtgag ctatgagaaa gcgccacgct
     4741 tcccgaaggg agaaaggcgg acaggtatcc ggtaagcggc agggtcggaa caggagagcg
     4801 cacgagggag cttccagggg gaaacgcctg gtatctttat agtcctgtcg ggtttcgcca
     4861 cctctgactt gagcgtcgat ttttgtgatg ctcgtcaggg gggcggagcc tatggaaaaa
     4921 cgccagcaac gcggcctttt tacggttcct ggccttttgc tggccttttg ctcacatgtt
     4981 ctttcctgcg ttatcccctg attctgtgga taaccgtatt accgccatgc attagttatt
     5041 aatagtaatc aattacgggg tcattagttc atagcccata tatggagttc cgcgttacat
     5101 aacttacggt aaatggcccg cctggctgac cgcccaacga cccccgccca ttgacgtcaa
     5161 taatgacgta tgttcccata gtaacgccaa tagggacttt ccattgacgt caatgggtgg
     5221 agtatttacg gtaaactgcc cacttggcag tacatcaagt gtatcatatg ccaagtacgc
     5281 cccctattga cgtcaatgac ggtaaatggc ccgcctggca ttatgcccag tacatgacct
     5341 tatgggactt tcctacttgg cagtacatct acgtattagt catcgctatt accatggtga
     5401 tgcggttttg gcagtacatc aatgggcgtg gatagcggtt tgactcacgg ggatttccaa
     5461 gtctccaccc cattgacgtc aatgggagtt tgttttggca ccaaaatcaa cgggactttc
     5521 caaaatgtcg taacaactcc gccccattga cgcaaatggg cggtaggcgt gtacggtggg
     5581 aggtctatat aagcagagct ggtttagtga accgtcagat ccgctagcgc taccggactc
     5641 agatctcgag ctcaagcttc gaattccagg
//
