LOCUS       sequence-210597-        8079 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  Truncated Hsh155 (aa 1-956).
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 8079)
  AUTHORS   Carrocci TJ, Paulson JC, Hoskins AA
  TITLE     Functional Analysis of Hsh155/SF3b1 Interactions with the U2 
            snRNA/Branch Site Duplex.
  JOURNAL   RNA. 2018 May 11. pii: rna.065664.118. doi: 10.1261/rna.065664.118.
  PUBMED    29752352
REFERENCE   2  (bases 1 to 8079)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; journalName: "RNA. 2018 
            May 11. pii: rna.065664.118. doi: 10.1261/rna.065664.118."
COMMENT     Sequence Label: Hsh155 1-956
FEATURES             Location/Qualifiers
     source          1..8079
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     primer_bind     complement(29..51)
                     /label=pGEX 3'
                     /note="pGEX vectors, reverse primer"
     primer_bind     151..170
                     /label=pRS-marker
                     /note="pRS vectors, use to sequence yeast selectable 
                     marker"
     promoter        187..467
                     /gene="S. cerevisiae TRP1"
                     /label=TRP1 promoter
     CDS             468..1142
                     /codon_start=1
                     /gene="S. cerevisiae TRP1"
                     /product="phosphoribosylanthranilate isomerase, required 
                     for tryptophan biosynthesis"
                     /label=TRP1
                     /note="yeast auxotrophic marker"
                     /translation="MSVINFTGSSGPLVKVCGLQSTEAAECALDSDADLLGIICVPNRK
                     RTIDPVIARKISSLVKAYKNSSGTPKYLVGVFRNQPKEDVLALVNDYGIDIVQLHGDES
                     WQEYQEFLGLPVIKRLVFPKDCNILLSAASQKPHSFIPLFDSEAGGTGELLDWNSISDW
                     VGRQESPESLHFMLAGGLTPENVGDALRLNGVIGVDVSGGVETNGVKDSNKIANFVKNA
                     KK"
     rep_origin      complement(1241..1696)
                     /direction=LEFT
                     /label=f1 ori
                     /note="f1 bacteriophage origin of replication; arrow 
                     indicates direction of (+) strand synthesis"
     primer_bind     complement(1378..1399)
                     /label=F1ori-F
                     /note="F1 origin, forward primer"
     primer_bind     1590..1609
                     /label=F1ori-R
                     /note="F1 origin, reverse primer"
     primer_bind     1826..1848
                     /label=M13/pUC Forward
                     /note="In lacZ gene"
     primer_bind     1840..1857
                     /label=M13 Forward
                     /note="In lacZ gene. Also called M13-F20 or M13 (-21) 
                     Forward"
     primer_bind     1841..1857
                     /label=M13 fwd
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     1867..1886
                     /label=T7
                     /note="T7 promoter, forward primer"
     promoter        1867..1885
                     /label=T7 promoter
                     /note="promoter for bacteriophage T7 RNA polymerase"
     primer_bind     complement(5305..5325)
                     /label=T3
                     /note="T3 promoter, forward primer"
     promoter        complement(5305..5323)
                     /label=T3 promoter
                     /note="promoter for bacteriophage T3 RNA polymerase"
     primer_bind     complement(5344..5360)
                     /label=M13 rev
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     complement(5344..5360)
                     /label=M13 Reverse
                     /note="In lacZ gene. Also called M13-rev"
     primer_bind     complement(5357..5379)
                     /label=M13/pUC Reverse
                     /note="In lacZ gene"
     protein_bind    5368..5384
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     promoter        complement(join(5392..5398,5399..5416,5417..5422))
                     /label=lac promoter
                     /note="promoter for the E. coli lac operon"
     primer_bind     complement(5575..5592)
                     /label=L4440
                     /note="L4440 vector, forward primer"
     rep_origin      complement(5746..6334)
                     /direction=LEFT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     complement(5826..5845)
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     CDS             complement(join(6505..7296,7297..7365))
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     7128..7147
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
     promoter        complement(7366..7470)
                     /gene="bla"
                     /label=AmpR promoter
     misc_feature    7507..8010
                     /label=CEN/ARS
                     /note="S. cerevisiae CEN6 centromere fused to an 
                     autonomously replicating sequence"
     primer_bind     8052..8070
                     /label=pBRforEco
                     /note="pBR322 vectors, upsteam of EcoRI site, forward 
                     primer"
ORIGIN
        1 tcgcgcgttt cggtgatgac ggtgaaaacc tctgacacat gcagctcccg gagacggtca
       61 cagcttgtct gtaagcggat gccgggagca gacaagcccg tcagggcgcg tcagcgggtg
      121 ttggcgggtg tcggggctgg cttaactatg cggcatcaga gcagattgta ctgagagtgc
      181 accataaacg acattactat atatataata taggaagcat ttaatagaca gcatcgtaat
      241 atatgtgtac tttgcagtta tgacgccaga tggcagtagt ggaagatatt ctttattgaa
      301 aaatagcttg tcaccttacg tacaatcttg atccggagct tttctttttt tgccgattaa
      361 gaattaattc ggtcgaaaaa agaaaaggag agggccaaga gggagggcat tggtgactat
      421 tgagcacgtg agtatacgtg attaagcaca caaaggcagc ttggagtatg tctgttatta
      481 atttcacagg tagttctggt ccattggtga aagtttgcgg cttgcagagc acagaggccg
      541 cagaatgtgc tctagattcc gatgctgact tgctgggtat tatatgtgtg cccaatagaa
      601 agagaacaat tgacccggtt attgcaagga aaatttcaag tcttgtaaaa gcatataaaa
      661 atagttcagg cactccgaaa tacttggttg gcgtgtttcg taatcaacct aaggaggatg
      721 ttttggctct ggtcaatgat tacggcattg atatcgtcca actgcatgga gatgagtcgt
      781 ggcaagaata ccaagagttc ctcggtttgc cagttattaa aagactcgta tttccaaaag
      841 actgcaacat actactcagt gcagcttcac agaaacctca ttcgtttatt cccttgtttg
      901 attcagaagc aggtgggaca ggtgaacttt tggattggaa ctcgatttct gactgggttg
      961 gaaggcaaga gagccccgaa agcttacatt ttatgttagc tggtggactg acgccagaaa
     1021 atgttggtga tgcgcttaga ttaaatggcg ttattggtgt tgatgtaagc ggaggtgtgg
     1081 agacaaatgg tgtaaaagac tctaacaaaa tagcaaattt cgtcaaaaat gctaagaaat
     1141 aggttattac tgagtagtat ttatttaagt attgtttgtg cacttgccta tgcggtgtga
     1201 aataccgcac agatgcgtaa ggagaaaata ccgcatcagg aaattgtaaa cgttaatatt
     1261 ttgttaaaat tcgcgttaaa tttttgttaa atcagctcat tttttaacca ataggccgaa
     1321 atcggcaaaa tcccttataa atcaaaagaa tagaccgaga tagggttgag tgttgttcca
     1381 gtttggaaca agagtccact attaaagaac gtggactcca acgtcaaagg gcgaaaaacc
     1441 gtctatcagg gcgatggccc actacgtgaa ccatcaccct aatcaagttt tttggggtcg
     1501 aggtgccgta aagcactaaa tcggaaccct aaagggagcc cccgatttag agcttgacgg
     1561 ggaaagccgg cgaacgtggc gagaaaggaa gggaagaaag cgaaaggagc gggcgctagg
     1621 gcgctggcaa gtgtagcggt cacgctgcgc gtaaccacca cacccgccgc gcttaatgcg
     1681 ccgctacagg gcgcgtcgcg ccattcgcca ttcaggctgc gcaactgttg ggaagggcga
     1741 tcggtgcggg cctcttcgct attacgccag ctggcgaaag ggggatgtgc tgcaaggcga
     1801 ttaagttggg taacgccagg gttttcccag tcacgacgtt gtaaaacgac ggccagtgag
     1861 cgcgcgtaat acgactcact atagggcgaa ttgggtaccg ggccccccct cgagcatgta
     1921 ctttccgcct aactaccatc acctgtcttt atttattccg ctgacagata tgcacaacca
     1981 attatcgtct cttgaaagct ttttagacgt gattgctgtt atttggcacg ttgttagtat
     2041 ttaagcttat tcgggtttgc attgatattt gcccgagcag aaatctcctt ctcgatgagt
     2101 tagaactgaa acatctcttc aattacttat acataataaa catagaaagc caggacctgt
     2161 catcatgagt catccgattc aatttgtaaa cgctaataat agcgataaga gccaccaatt
     2221 aggcggtcaa tattctattc ctcaggattt gagggaaaac ctgcagaaag aagctgcacg
     2281 tattggtgag aacgaaaaag atgtgctaca ggaaaaaatg gaaactagga cagtgcaaaa
     2341 tcgagaggat tcataccaca aaagaaggtt tgatatgaag tttgagccgg attccgatac
     2401 acaaactgtt acgtcttcag aaaataccca agacgctgtc gtgccaagga aaagaaaatc
     2461 tcgttgggat gtaaaagggt acgagccacc tgatgaatct tcaacagcgg tcaaagaaaa
     2521 ctctgatagt gctttggtta atgtagaagg aatccatgat ttgatgtttt ttaaaccttc
     2581 tgaccataaa tatttcgccg acgttatatc caaaaaaccc atagatgagt taaataagga
     2641 tgaaaagaaa gaaagaaccc tgtcgatgtt acttctgaaa ataaaaaatg gcaatacagc
     2701 gagtaggagg acttctatgc ggattttaac cgataaagct gttacatttg gtccagaaat
     2761 gatatttaac cgcttattgc ccatattact agacagaagt ttggaagacc aggaaagaca
     2821 tctaatgatc aagaccatag atcgcgtcct ttaccagcta ggagatttaa caaaacctta
     2881 cgttcacaaa atacttgtag tagctgcccc attgctaata gatgaagatc caatggttcg
     2941 ttcaacaggc caggagataa tcaccaatct gtctacagtc gctggcctaa aaaccattct
     3001 aacagtaatg agacctgata ttgagaatga ggatgagtat gttagaaatg taacttcaag
     3061 agcggcggct gtggtggcaa aagcccttgg tgttaatcaa ttgcttcctt tcatcaatgc
     3121 agcatgccac tcacggaagt cttggaaagc aaggcatact ggcataaaaa ttgtgcagca
     3181 aataggtata cttttgggaa taggtgtctt gaatcatctt actgggctga tgagttgtat
     3241 caaagactgc ctaatggatg atcacgttcc ggtgcgaatt gttacagcac atactttatc
     3301 aacactagca gaaaattctt atccatatgg tatcgaagtt ttcaacgttg tactggagcc
     3361 attatggaag ggtataagaa gtcatcgtgg taaagtgcta tcttcttttt taaaagctgt
     3421 tggatctatg atcccattga tggacccaga gtatgccggt tattatacca cagaagcaat
     3481 gagaataatt agacgtgaat tcgactctcc cgatgatgaa atgaaaaaga ccattctttt
     3541 agtattacaa aaatgtagcg ctgtagaatc cataacgcca aaatttctga gagaagaaat
     3601 cgcgccagaa ttctttcaaa aattttgggt cagacgagtg gcattggata gaccattaaa
     3661 caaagttgtt acatatacta ctgttacatt agcaaagaaa ttaggttgtt cttataccat
     3721 tgataaatta ttaacaccat tgagagatga agctgagccg ttcagaacaa tggctgtcca
     3781 tgctgttact agaacagtaa acttattagg gacagcagat ttagatgaga gattagaaac
     3841 gaggcttatt gatgcgctct tgatagcatt tcaagaacaa acaaatagtg attctataat
     3901 ctttaaaggg tttggggcag tgacggtgtc acttgacatc cgtatgaaac cgtttttagc
     3961 acccattgtg agtacgattt taaatcattt aaagcataaa actcccttgg ttcgtcaaca
     4021 tgcagcagat ctatgtgcca tactaatacc agtcatcaag aactgtcacg aattcgaaat
     4081 gttgaataaa ttgaacatta tattgtatga atccttaggc gaagtatatc cagaggtatt
     4141 aggttctata atcaacgcta tgtactgtat tactagcgta atggatttgg ataaactaca
     4201 acctcctatt aatcaaattt taccaacctt aactccaatt ttaagaaaca agcatagaaa
     4261 agtcgaagta aacactatca aatttgttgg acttattggt aaattagcac ctacctatgc
     4321 acctcctaaa gaatggatga gaatatgttt tgaactatta gaacttttga aaagtacaaa
     4381 taaagaaata agaagatcag caaatgccac gtttggattc attgctgaag caattggacc
     4441 tcacgatgtt cttgttgcgt tattgaacaa tttaaaggtt caagaacgtc agttacgtgt
     4501 atgcacggct gttgctatcg gtatcgttgc taaagtgtgt ggtccttaca acgtgctgcc
     4561 agtaatcatg aatgaataca caacaccaga gactaatgtt caaaacggtg ttctcaaggc
     4621 catgtcattc atgtttgagt acattggtaa catgtctaag gattacatat acttcataac
     4681 accattatta gaagatgcac tcaccgatag ggatttagtt catcgtcaga cagcgtcgaa
     4741 cgtaataacc cacttagctt taaactgttc aggtacaggt cacgaagatg ccttcattca
     4801 tttaatgaat cttctaatac ccaatatttt tgaaacttca ccacatgcta ttatgcgtat
     4861 tttagaaggt ttggaggcac tgagtcaagc tcttggccct ggactattca tgaactacat
     4921 atgggcagga ttgttccatc cagcgaagaa tgtaaggaaa gcattttgga gggtgtataa
     4981 taacatgtac gtaatgtacc aggacgccat ggtacctttt taccccgtta catgaatata
     5041 tatagagcat ataaataacc acaacttgta agaatatttt acttgacaca cctatatcat
     5101 cacgtcacga tgccttcata gattatgatg aaatataaac agaacctgct attggaaaaa
     5161 aaagggcagg aaaaaatttt gtgaaagtga gtaaaagaaa gatgaagagc gagacatgga
     5221 taataagaaa tagatgtcac taatggacaa ttggaagact gatatggaaa gttacgatga
     5281 aggaggagct cccagctttt gttcccttta gtgagggtta attgcgcgct tggcgtaatc
     5341 atggtcatag ctgtttcctg tgtgaaattg ttatccgctc acaattccac acaacatagg
     5401 agccggaagc ataaagtgta aagcctgggg tgcctaatga gtgaggtaac tcacattaat
     5461 tgcgttgcgc tcactgcccg ctttccagtc gggaaacctg tcgtgccagc tgcattaatg
     5521 aatcggccaa cgcgcgggga gaggcggttt gcgtattggg cgctcttccg cttcctcgct
     5581 cactgactcg ctgcgctcgg tcgttcggct gcggcgagcg gtatcagctc actcaaaggc
     5641 ggtaatacgg ttatccacag aatcagggga taacgcagga aagaacatgt gagcaaaagg
     5701 ccagcaaaag gccaggaacc gtaaaaaggc cgcgttgctg gcgtttttcc ataggctccg
     5761 cccccctgac gagcatcaca aaaatcgacg ctcaagtcag aggtggcgaa acccgacagg
     5821 actataaaga taccaggcgt ttccccctgg aagctccctc gtgcgctctc ctgttccgac
     5881 cctgccgctt accggatacc tgtccgcctt tctcccttcg ggaagcgtgg cgctttctca
     5941 tagctcacgc tgtaggtatc tcagttcggt gtaggtcgtt cgctccaagc tgggctgtgt
     6001 gcacgaaccc cccgttcagc ccgaccgctg cgccttatcc ggtaactatc gtcttgagtc
     6061 caacccggta agacacgact tatcgccact ggcagcagcc actggtaaca ggattagcag
     6121 agcgaggtat gtaggcggtg ctacagagtt cttgaagtgg tggcctaact acggctacac
     6181 tagaaggaca gtatttggta tctgcgctct gctgaagcca gttaccttcg gaaaaagagt
     6241 tggtagctct tgatccggca aacaaaccac cgctggtagc ggtggttttt ttgtttgcaa
     6301 gcagcagatt acgcgcagaa aaaaaggatc tcaagaagat cctttgatct tttctacggg
     6361 gtctgacgct cagtggaacg aaaactcacg ttaagggatt ttggtcatga gattatcaaa
     6421 aaggatcttc acctagatcc ttttaaatta aaaatgaagt tttaaatcaa tctaaagtat
     6481 atatgagtaa acttggtctg acagttacca atgcttaatc agtgaggcac ctatctcagc
     6541 gatctgtcta tttcgttcat ccatagttgc ctgactcccc gtcgtgtaga taactacgat
     6601 acgggagggc ttaccatctg gccccagtgc tgcaatgata ccgcgagacc cacgctcacc
     6661 ggctccagat ttatcagcaa taaaccagcc agccggaagg gccgagcgca gaagtggtcc
     6721 tgcaacttta tccgcctcca tccagtctat taattgttgc cgggaagcta gagtaagtag
     6781 ttcgccagtt aatagtttgc gcaacgttgt tgccattgct acaggcatcg tggtgtcacg
     6841 ctcgtcgttt ggtatggctt cattcagctc cggttcccaa cgatcaaggc gagttacatg
     6901 atcccccatg ttgtgcaaaa aagcggttag ctccttcggt cctccgatcg ttgtcagaag
     6961 taagttggcc gcagtgttat cactcatggt tatggcagca ctgcataatt ctcttactgt
     7021 catgccatcc gtaagatgct tttctgtgac tggtgagtac tcaaccaagt cattctgaga
     7081 atagtgtatg cggcgaccga gttgctcttg cccggcgtca atacgggata ataccgcgcc
     7141 acatagcaga actttaaaag tgctcatcat tggaaaacgt tcttcggggc gaaaactctc
     7201 aaggatctta ccgctgttga gatccagttc gatgtaaccc actcgtgcac ccaactgatc
     7261 ttcagcatct tttactttca ccagcgtttc tgggtgagca aaaacaggaa ggcaaaatgc
     7321 cgcaaaaaag ggaataaggg cgacacggaa atgttgaata ctcatactct tcctttttca
     7381 atattattga agcatttatc agggttattg tctcatgagc ggatacatat ttgaatgtat
     7441 ttagaaaaat aaacaaatag gggttccgcg cacatttccc cgaaaagtgc cacctgggtc
     7501 cttttcatca cgtgctataa aaataattat aatttaaatt ttttaatata aatatataaa
     7561 ttaaaaatag aaagtaaaaa aagaaattaa agaaaaaata gtttttgttt tccgaagatg
     7621 taaaagactc tagggggatc gccaacaaat actacctttt atcttgctct tcctgctctc
     7681 aggtattaat gccgaattgt ttcatcttgt ctgtgtagaa gaccacacac gaaaatcctg
     7741 tgattttaca ttttacttat cgttaatcga atgtatatct atttaatctg cttttcttgt
     7801 ctaataaata tatatgtaaa gtacgctttt tgttgaaatt ttttaaacct ttgtttattt
     7861 ttttttcttc attccgtaac tcttctacct tctttattta ctttctaaaa tccaaataca
     7921 aaacataaaa ataaataaac acagagtaaa ttcccaaatt attccatcat taaaagatac
     7981 gaggcgcgtg taagttacag gcaagcgatc cgtcctaaga aaccattatt atcatgacat
     8041 taacctataa aaataggcgt atcacgaggc cctttcgtc
//
