LOCUS       sequence-214775-        7458 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  CRISPR donor plasmid to tag human transcription factor HOXB13 with 
            GFP.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 7458)
  TITLE     White lab ENCODE plasmids to tag human transcription factors with 
            GFP
REFERENCE   2  (bases 1 to 7458)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"
COMMENT     Sequence Label: pHOXB13-donor
FEATURES             Location/Qualifiers
     source          1..7458
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     primer_bind     complement(34..50)
                     /label=M13 rev
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     complement(34..50)
                     /label=M13 Reverse
                     /note="In lacZ gene. Also called M13-rev"
     primer_bind     complement(47..69)
                     /label=M13/pUC Reverse
                     /note="In lacZ gene"
     protein_bind    58..74
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     promoter        complement(join(82..88,89..106,107..112))
                     /label=lac promoter
                     /note="promoter for the E. coli lac operon"
     protein_bind    127..148
                     /label=CAP binding site
                     /bound_moiety="E. coli catabolite activator protein"
                     /note="CAP binding activates transcription in the presence 
                     of cAMP."
     primer_bind     complement(265..282)
                     /label=L4440
                     /note="L4440 vector, forward primer"
     rep_origin      complement(436..1024)
                     /direction=LEFT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     complement(516..535)
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     CDS             complement(join(1195..1986,1987..2055))
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     1818..1837
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
     promoter        complement(2056..2160)
                     /gene="bla"
                     /label=AmpR promoter
     primer_bind     2228..2246
                     /label=pBRforEco
                     /note="pBR322 vectors, upsteam of EcoRI site, forward 
                     primer"
     primer_bind     complement(2284..2306)
                     /label=pGEX 3'
                     /note="pGEX vectors, reverse primer"
     primer_bind     2406..2425
                     /label=pRS-marker
                     /note="pRS vectors, use to sequence yeast selectable 
                     marker"
     primer_bind     2619..2641
                     /label=M13/pUC Forward
                     /note="In lacZ gene"
     primer_bind     2633..2650
                     /label=M13 Forward
                     /note="In lacZ gene. Also called M13-F20 or M13 (-21) 
                     Forward"
     primer_bind     2634..2650
                     /label=M13 fwd
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     CDS             3874..3894
                     /codon_start=1
                     /product="tobacco etch virus (TEV) protease recognition and
                     cleavage site"
                     /label=TEV site
                     /translation="ENLYFQG"
     CDS             3907..3951
                     /codon_start=1
                     /product="affinity and epitope tag derived from pancreatic 
                     ribonuclease A"
                     /label=S-Tag
                     /translation="KETAAAKFERQHMDS"
     CDS             3991..4014
                     /codon_start=1
                     /product="recognition and cleavage site for human 
                     rhinovirus 3C and PreScission proteases"
                     /label=HRV 3C site
                     /translation="LEVLFQGP"
     CDS             join(4042..4044,4045..4047,4048..4761)
                     /codon_start=1
                     /product="the original enhanced GFP (Yang et al., 1996)"
                     /label=EGFP
                     /note="mammalian codon-optimized"
                     /translation="MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTL
                     KFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDD
                     GNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIK
                     VNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLK
                     EFVTAAGITLGMDELYK"
     primer_bind     complement(4087..4108)
                     /label=EGFP-N
                     /note="EGFP, reverse primer"
     primer_bind     complement(4348..4367)
                     /label=EXFP-R
                     /note="For distinguishing EGFP variants, reverse primer"
     misc_feature    join(4799..5372,5373..5375,5376..5384)
                     /label=IRES2
                     /note="internal ribosome entry site (IRES) of the 
                     encephalomyocarditis virus (EMCV)"
     primer_bind     complement(4965..4982)
                     /label=IRES reverse
                     /note="IRES internal ribosome entry site, reverse primer. 
                     Also called pCDH-rev"
     primer_bind     5192..5211
                     /label=IRES-F
                     /note="IRES internal ribosome entry site, forward primer"
     CDS             5466..6269
                     /codon_start=1
                     /gene="aph(3')-II (or nptII)"
                     /product="aminoglycoside phosphotransferase from Tn5"
                     /label=NeoR/KanR
                     /note="confers resistance to neomycin, kanamycin, and G418 
                     (Geneticin(R))"
                     /translation="MGSAIEQDGLHAGSPAAWVERLFGYDWAQQTIGCSDAAVFRLSAQ
                     GRPVLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQD
                     LLSSHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDE
                     EHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQ
                     DIALATRDIAEELGGEWADRFLVLYGIAAPDSQRIAFYRLLDEFF"
     primer_bind     complement(5529..5548)
                     /label=Neo-R
                     /note="Neomycin resistance gene, reverse primer"
     primer_bind     6139..6158
                     /label=Neo-F
                     /note="Neomycin resistance gene, forward primer"
ORIGIN
        1 gacctgcagg catgcaagct tggcgtaatc atggtcatag ctgtttcctg tgtgaaattg
       61 ttatccgctc acaattccac acaacatacg agccggaagc ataaagtgta aagcctgggg
      121 tgcctaatga gtgagctaac tcacattaat tgcgttgcgc tcactgcccg ctttccagtc
      181 gggaaacctg tcgtgccagc tgcattaatg aatcggccaa cgcgcgggga gaggcggttt
      241 gcgtattggg cgctcttccg cttcctcgct cactgactcg ctgcgctcgg tcgttcggct
      301 gcggcgagcg gtatcagctc actcaaaggc ggtaatacgg ttatccacag aatcagggga
      361 taacgcagga aagaacatgt gagcaaaagg ccagcaaaag gccaggaacc gtaaaaaggc
      421 cgcgttgctg gcgtttttcc ataggctccg cccccctgac gagcatcaca aaaatcgacg
      481 ctcaagtcag aggtggcgaa acccgacagg actataaaga taccaggcgt ttccccctgg
      541 aagctccctc gtgcgctctc ctgttccgac cctgccgctt accggatacc tgtccgcctt
      601 tctcccttcg ggaagcgtgg cgctttctca tagctcacgc tgtaggtatc tcagttcggt
      661 gtaggtcgtt cgctccaagc tgggctgtgt gcacgaaccc cccgttcagc ccgaccgctg
      721 cgccttatcc ggtaactatc gtcttgagtc caacccggta agacacgact tatcgccact
      781 ggcagcagcc actggtaaca ggattagcag agcgaggtat gtaggcggtg ctacagagtt
      841 cttgaagtgg tggcctaact acggctacac tagaaggaca gtatttggta tctgcgctct
      901 gctgaagcca gttaccttcg gaaaaagagt tggtagctct tgatccggca aacaaaccac
      961 cgctggtagc ggtggttttt ttgtttgcaa gcagcagatt acgcgcagaa aaaaaggatc
     1021 tcaagaagat cctttgatct tttctacggg gtctgacgct cagtggaacg aaaactcacg
     1081 ttaagggatt ttggtcatga gattatcaaa aaggatcttc acctagatcc ttttaaatta
     1141 aaaatgaagt tttaaatcaa tctaaagtat atatgagtaa acttggtctg acagttacca
     1201 atgcttaatc agtgaggcac ctatctcagc gatctgtcta tttcgttcat ccatagttgc
     1261 ctgactcccc gtcgtgtaga taactacgat acgggagggc ttaccatctg gccccagtgc
     1321 tgcaatgata ccgcgagacc cacgctcacc ggctccagat ttatcagcaa taaaccagcc
     1381 agccggaagg gccgagcgca gaagtggtcc tgcaacttta tccgcctcca tccagtctat
     1441 taattgttgc cgggaagcta gagtaagtag ttcgccagtt aatagtttgc gcaacgttgt
     1501 tgccattgct acaggcatcg tggtgtcacg ctcgtcgttt ggtatggctt cattcagctc
     1561 cggttcccaa cgatcaaggc gagttacatg atcccccatg ttgtgcaaaa aagcggttag
     1621 ctccttcggt cctccgatcg ttgtcagaag taagttggcc gcagtgttat cactcatggt
     1681 tatggcagca ctgcataatt ctcttactgt catgccatcc gtaagatgct tttctgtgac
     1741 tggtgagtac tcaaccaagt cattctgaga atagtgtatg cggcgaccga gttgctcttg
     1801 cccggcgtca atacgggata ataccgcgcc acatagcaga actttaaaag tgctcatcat
     1861 tggaaaacgt tcttcggggc gaaaactctc aaggatctta ccgctgttga gatccagttc
     1921 gatgtaaccc actcgtgcac ccaactgatc ttcagcatct tttactttca ccagcgtttc
     1981 tgggtgagca aaaacaggaa ggcaaaatgc cgcaaaaaag ggaataaggg cgacacggaa
     2041 atgttgaata ctcatactct tcctttttca atattattga agcatttatc agggttattg
     2101 tctcatgagc ggatacatat ttgaatgtat ttagaaaaat aaacaaatag gggttccgcg
     2161 cacatttccc cgaaaagtgc cacctgacgt ctaagaaacc attattatca tgacattaac
     2221 ctataaaaat aggcgtatca cgaggccctt tcgtctcgcg cgtttcggtg atgacggtga
     2281 aaacctctga cacatgcagc tcccggagac ggtcacagct tgtctgtaag cggatgccgg
     2341 gagcagacaa gcccgtcagg gcgcgtcagc gggtgttggc gggtgtcggg gctggcttaa
     2401 ctatgcggca tcagagcaga ttgtactgag agtgcaccat atgcggtgtg aaataccgca
     2461 cagatgcgta aggagaaaat accgcatcag gcgccattcg ccattcaggc tgcgcaactg
     2521 ttgggaaggg cgatcggtgc gggcctcttc gctattacgc cagctggcga aagggggatg
     2581 tgctgcaagg cgattaagtt gggtaacgcc agggttttcc cagtcacgac gttgtaaaac
     2641 gacggccagt gaattcgagc tcggtacccg gtccccttgt ctctgagcct ggggttgtgg
     2701 gtcccaatgg catttccctg ggaggaggag gagggagact tggagctggt gaggatgagc
     2761 ttggtgctcc tcccttggtt attaggactc tgaaggaggt ctgagtagct ggagggcctg
     2821 gatggaggtc agtgtgaggg gcctgagctg ggtgctatct gaagcctgaa ggccacctca
     2881 cttctccagg aggccctggg accagccttt caacatgtct gagaggttta gatctctttg
     2941 ctgttgagtg gggatcaggg tgtccctacc cagcacaatt ccaaactaat tctacacaaa
     3001 agctaaataa ctctcaattc ggtgcgtggg gagtgggtgt gggagatggg taaaaaggta
     3061 ttggatgtac tgtagagaat acaacctctc actttctatt agatgagttt tccaatttcc
     3121 aaagaaaaat ttaggtttcc tgcagccgtg acatatgtgt gtgcactggg atgggttaat
     3181 gtgtgtgtgt gtgtgtgtat gcgcatgtat tgggagtggg ggcagaaacg tgtttccaga
     3241 atttgcctgt agaatctaaa agagtggcca agagtctgga aatgcatgaa gactggacgt
     3301 atgtgatggt gggcaaaggc ctgactgtgt gtggtgtgtg ggtatgtttg cagattcgcg
     3361 ggtgtgagag cagtgatggg tgagggtggc cttcaggagc caaggctgag cggtggtgag
     3421 agaacaagcc ggaagccagg gtgctgtcct ggtatgcttt ggaggaacag gattgcacgt
     3481 gcgcctgtag ggtgacctgt gtgcacctgt gagatgactt agcttggggc ttgcaaggcc
     3541 tgggtctgca tgggtgggta tctgaccatg ccttttcctc cctccctttc acgccgcgca
     3601 gactccagcg ggcagcaccc tcctgacgcc tgcgcctttc gtcgcggccg caagaaacgc
     3661 attccgtaca gcaaggggca gttgcgggag ctggagcggg agtatgcggc taacaagttc
     3721 atcaccaagg acaagaggcg caagatctcg gcagccacca gcctctcgga gcgccagatt
     3781 accatctggt ttcagaaccg ccgggtcaaa gagaagaagg ttctcgccaa ggtgaagaac
     3841 agcgctaccc ctgggattcc aactactgca agcgagaatc tttattttca gggcgccgcc
     3901 aaattcaaag aaaccgctgc tgctaaattc gaacgccagc acatggacag cggaggtgga
     3961 ggttcgagcg gtccctcggg ttcgtcgagc ctggaagttc tgttccaggg gcccctgtcg
     4021 tcgagcggtc cctcgggttc gatggtgagc aaaggcgagg agctgttcac cggggtggtg
     4081 cccatcctgg tcgagctgga cggcgacgta aacggccaca agttcagcgt gtccggcgag
     4141 ggcgagggcg atgccaccta cggcaagctg accctgaagt tcatctgcac caccggcaag
     4201 ctgcccgtgc cctggcccac cctcgtgacc accctgacct acggcgtgca gtgcttcagc
     4261 cgctaccccg accacatgaa gcagcacgac ttcttcaagt ccgccatgcc cgaaggctac
     4321 gtccaggagc gcaccatctt cttcaaggac gacggcaact acaagacccg cgccgaggtg
     4381 aagttcgagg gcgacaccct ggtgaaccgc atcgagctga agggcatcga cttcaaggag
     4441 gacggcaaca tcctggggca caagctggag tacaactaca acagccacaa cgtctatatc
     4501 atggccgaca agcagaagaa cggcatcaag gtgaacttca agatccgcca caacatcgag
     4561 gacggcagcg tgcagctcgc cgaccactac cagcagaaca cccccatcgg cgacggcccc
     4621 gtgctgctgc ccgacaacca ctacctgagc acccagtccg ccctgagcaa agaccccaac
     4681 gagaagcgcg atcacatggt ccttaaggag ttcgtgaccg ccgccgggat cactctcggc
     4741 atggacgagc tgtacaagta atgatctaga gtcgagttaa ttaagaattc cgcccccccc
     4801 cctctccctc ccccccccta acgttactgg ccgaagccgc ttggaataag gccggtgtgc
     4861 gtttgtctat atgttatttt ccaccatatt gccgtctttt ggcaatgtga gggcccggaa
     4921 acctggccct gtcttcttga cgagcattcc taggggtctt tcccctctcg ccaaaggaat
     4981 gcagggtctg ttgaatgtcg tgaaggaagc agttcctctg gaagcttctt gaagacaaac
     5041 aacgtctgta gcgacccttt gcaggcagcg gaacccccca cctggcgaca ggtgcctctg
     5101 cggccaaaag ccacgtgtat aagatacacc tgcaaaggcg gcacaacccc agtgccacgt
     5161 tgtgagttgg atagttgtgg aaagagtcaa atggctctcc tcaagcgtat tcaacaaggg
     5221 gctgaaggat gcccagaagg taccccattg tatgggatct gatctggggc ctcggtgcac
     5281 atgctttaca tgtgtttagt cgaggttaaa aaaacgtcta ggccccccga accacgggga
     5341 cgtggttttc ctttgaaaaa cacgatgata atatggccac aacctgttac attgcacaag
     5401 ataaaaatat atcatcacga acagtaaaac tgtctgctta cataaacagt aatacaaggg
     5461 gtgttatggg atcggccatt gaacaagatg gattgcacgc aggttctccg gccgcttggg
     5521 tggagaggct attcggctat gactgggcac aacagacaat cggctgctct gatgccgccg
     5581 tgttccggct gtcagcgcag gggcgcccgg ttctttttgt caagaccgac ctgtccggtg
     5641 ccctgaatga actgcaggac gaggcagcgc ggctatcgtg gctggccacg acgggcgttc
     5701 cttgcgcagc tgtgctcgac gttgtcactg aagcgggaag ggactggctg ctattgggcg
     5761 aagtgccggg gcaggatctc ctgtcatctc accttgctcc tgccgagaaa gtatccatca
     5821 tggctgatgc aatgcggcgg ctgcatacgc ttgatccggc tacctgccca ttcgaccacc
     5881 aagcgaaaca tcgcatcgag cgagcacgta ctcggatgga agccggtctt gtcgatcagg
     5941 atgatctgga cgaagagcat caggggctcg cgccagccga actgttcgcc aggctcaagg
     6001 cgcgcatgcc cgacggcgag gatctcgtcg tgacccatgg cgatgcctgc ttgccgaata
     6061 tcatggtgga aaatggccgc ttttctggat tcatcgactg tggccggctg ggtgtggcgg
     6121 accgctatca ggacatagcg ttggctaccc gtgatattgc tgaagagctt ggcggcgaat
     6181 gggctgaccg cttcctcgtg ctttacggta tcgccgctcc cgattcgcag cgcatcgcct
     6241 tctatcgcct tcttgacgag ttcttctgag tcgagatctc cttgcctggg tgggaggagc
     6301 gaaagtgggg gtgtcctggg gagaccagga acctgccaag cccaggctgg ggccaaggac
     6361 tctgctgaga ggcccctaga gacaacaccc ttcccaggcc actggctgct ggactgttcc
     6421 tcaggagcgg cctgggtacc cagtatgtgc agggagacgg aaccccatgt gacagcccac
     6481 tccaccaggg ttcccaaaga acctggccca gtcataatca ttcatcctga cagtggcaat
     6541 aatcacgata accagtacta gctgccatga tcgttagcct catattttct atctagagct
     6601 ctgtagagca ctttagaaac cgctttcatg aattgagcta attatgaata aatttggaag
     6661 gcgatccctt tgcagggaag ctttctctca gacccccttc cattacacct ctcaccctgg
     6721 taacagcagg aagactgagg agaggggaac gggcagattc gttgtgtggc tgtgatgtcc
     6781 gtttagcatt tttctcagct gacagctggg taggtggaca attgtagagg ctgtctcttc
     6841 ctccctcctt gtccacccca tagggtgtac ccactggtct tggaagcacc catccttaat
     6901 acgatgattt ttctgtcgtg tgaaaatgaa gccagcaggc tgcccctagt cagtccttcc
     6961 ttccagagaa aaagagattt gagaaagtgc ctgggtaatt caccattaat ttcctccccc
     7021 aaactctctg agtcttccct taatatttct ggtggttctg accaaagcag gtcatggttt
     7081 gttgagcatt tgggatccca gtgaagtaga tgtttgtagc cttgcatact tagcccttcc
     7141 caggcacaaa cggagtggca gagtggtgcc aaccctgttt tcccagtcca cgtagacaga
     7201 ttcacagtgc ggaattctgg aagctggaga cagacgggct ctttgcagag ccgggactct
     7261 gagagggaca tgagggcctc tgcctctgtg ttcattctct gatgtcctgt acctgggctc
     7321 agtgcccggt gggactcatc tcctggccgc gcagcaaagc cagcgggttc gtgctggtcc
     7381 ttcctgcacc ttaggctggg ggtggggggc ctgccggcgc attctccacg attgagcgca
     7441 caggcctgaa gtctggac
//
