LOCUS       sequence-227208-        8019 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  Expresses CaBA-91RT-Cas1-Cas2 under pT7lac promoter, encodes 
            CaCRISPR array 1, compatible with SENECA acquisition readout.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 8019)
  AUTHORS   Schmidt F, Cherepkova MY, Platt RJ
  TITLE     Transcriptional recording by CRISPR spacer acquisition from RNA.
  JOURNAL   Nature. 2018 Oct;562(7727):380-385. doi: 10.1038/s41586-018-0569-1. 
            Epub 2018 Oct 3.
  PUBMED    30283135
REFERENCE   2  (bases 1 to 8019)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; doi: 
            "10.1038/s41586-018-0569-1"; journalName: "Nature"; date: "2018-10";
            volume: "562"; issue: "7727"; pages: "380-385"
COMMENT     Sequence Label: 
            pFS_0362_pET30-RT-CRISPR_Candidatus_Accumulibacter_sp._BA-91_ARRAY_1
FEATURES             Location/Qualifiers
     source          1..8019
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     CDS             complement(409..1224)
                     /codon_start=1
                     /product="aminoglycoside phosphotransferase"
                     /label=KanR
                     /note="confers resistance to kanamycin in bacteria or G418 
                     (Geneticin(R)) in eukaryotes"
                     /translation="MSHIQRETSCSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYG
                     KPDAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGK
                     TAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDA
                     SDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI
                     ADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF"
     CDS             complement(409..1224)
                     /codon_start=1
                     /gene="aph(3')-Ia"
                     /product="aminoglycoside phosphotransferase"
                     /label=KanR
                     /note="confers resistance to kanamycin in bacteria or G418 
                     (Geneticin(R)) in eukaryotes"
                     /translation="MSHIQRETSCSRPRLNSNMDADLYGYKWARDNVGQSGATIYRLYG
                     KPDAPELFLKHGKGSVANDVTDEMVRLNWLTEFMPLPTIKHFIRTPDDAWLLTTAIPGK
                     TAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDA
                     SDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI
                     ADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF"
     primer_bind     1132..1151
                     /label=Kan-R
                     /note="Kanamycin resistance gene, reverse primer"
     primer_bind     1216..1235
                     /label=pENTR-R
                     /note="pENTR vectors, reverse primer"
     rep_origin      1346..1934
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     1835..1854
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     primer_bind     2088..2105
                     /label=L4440
                     /note="L4440 vector, forward primer"
     misc_feature    2120..2259
                     /label=bom
                     /note="basis of mobility region from pBR322"
     primer_bind     complement(2185..2204)
                     /label=pRS-marker
                     /note="pRS vectors, use to sequence yeast selectable 
                     marker"
     primer_bind     2345..2367
                     /label=pGEX 3'
                     /note="pGEX vectors, reverse primer"
     CDS             complement(2361..2552)
                     /codon_start=1
                     /gene="rop"
                     /product="Rop protein, which maintains plasmids at low copy
                     number"
                     /label=rop
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGENL"
     CDS             complement(3361..4443)
                     /codon_start=1
                     /gene="lacI"
                     /product="lac repressor"
                     /label=lacI
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
                     /translation="MKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAEL
                     NYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGV
                     EACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSH
                     EDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSA
                     MSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSC
                     YIPPLTTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPNTQTASPR
                     ALADSLMQLARQVSRLESGQ"
     primer_bind     4405..4424
                     /label=LacI-R
                     /note="LacI, reverse primer"
     promoter        complement(4444..4521)
                     /gene="lacI"
                     /label=lacI promoter
     primer_bind     4727..4746
                     /label=pBRrevBam
                     /note="pBR322 vectors, tet region, downstream of BamHI, 
                     reverse primer"
     primer_bind     4834..4853
                     /label=T7
                     /note="T7 promoter, forward primer"
     promoter        4834..4852
                     /label=T7 promoter
                     /note="promoter for bacteriophage T7 RNA polymerase"
     protein_bind    4853..4877
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     RBS             4892..4914
                     /note="efficient ribosome binding site from bacteriophage 
                     T7 gene 10 (Olins and Rangwala, 1989)"
     primer_bind     complement(7932..7950)
                     /label=T7 Term
                     /note="T7 terminator, reverse primer"
     terminator      7946..7993
                     /label=T7 terminator
                     /note="transcription terminator for bacteriophage T7 RNA 
                     polymerase"
ORIGIN
        1 ccaggtggta ccccattttc ctgatgacga ttgggcatgg gtgacctgac tcttgccaaa
       61 ccctgtggat aagctgctag acttgccgga gtcatcgagg ttgggcaagc gacggtacgc
      121 aagtctccgg caagtcagcc ttttttgaca cccagtgctg aatagggaat cctgttcgaa
      181 caggcttgaa acgtcccgcg gccgctattc ttttgattta taagggattt tgccgatttc
      241 ggcctattgg ttaaaaaatg agctgattta acaaaaattt aacgcgaatt ttaacaaaat
      301 attaacgctt acaatttagg tggcactttt cggggaaatg tgcgcggaac ccctatttgt
      361 ttatttttct aaatacattc aaatatgtat ccgctcatga attaattctt agaaaaactc
      421 atcgagcatc aaatgaaact gcaatttatt catatcagga ttatcaatac catatttttg
      481 aaaaagccgt ttctgtaatg aaggagaaaa ctcaccgagg cagttccata ggatggcaag
      541 atcctggtat cggtctgcga ttccgactcg tccaacatca atacaaccta ttaatttccc
      601 ctcgtcaaaa ataaggttat caagtgagaa atcaccatga gtgacgactg aatccggtga
      661 gaatggcaaa agtttatgca tttctttcca gacttgttca acaggccagc cattacgctc
      721 gtcatcaaaa tcactcgcat caaccaaacc gttattcatt cgtgattgcg cctgagcgag
      781 acgaaatacg cgatcgctgt taaaaggaca attacaaaca ggaatcgaat gcaaccggcg
      841 caggaacact gccagcgcat caacaatatt ttcacctgaa tcaggatatt cttctaatac
      901 ctggaatgct gttttcccgg ggatcgcagt ggtgagtaac catgcatcat caggagtacg
      961 gataaaatgc ttgatggtcg gaagaggcat aaattccgtc agccagttta gtctgaccat
     1021 ctcatctgta acatcattgg caacgctacc tttgccatgt ttcagaaaca actctggcgc
     1081 atcgggcttc ccatacaatc gatagattgt cgcacctgat tgcccgacat tatcgcgagc
     1141 ccatttatac ccatataaat cagcatccat gttggaattt aatcgcggcc tagagcaaga
     1201 cgtttcccgt tgaatatggc tcataacacc ccttgtatta ctgtttatgt aagcagacag
     1261 ttttattgtt catgaccaaa atcccttaac gtgagttttc gttccactga gcgtcagacc
     1321 ccgtagaaaa gatcaaagga tcttcttgag atcctttttt tctgcgcgta atctgctgct
     1381 tgcaaacaaa aaaaccaccg ctaccagcgg tggtttgttt gccggatcaa gagctaccaa
     1441 ctctttttcc gaaggtaact ggcttcagca gagcgcagat accaaatact gtccttctag
     1501 tgtagccgta gttaggccac cacttcaaga actctgtagc accgcctaca tacctcgctc
     1561 tgctaatcct gttaccagtg gctgctgcca gtggcgataa gtcgtgtctt accgggttgg
     1621 actcaagacg atagttaccg gataaggcgc agcggtcggg ctgaacgggg ggttcgtgca
     1681 cacagcccag cttggagcga acgacctaca ccgaactgag atacctacag cgtgagctat
     1741 gagaaagcgc cacgcttccc gaagggagaa aggcggacag gtatccggta agcggcaggg
     1801 tcggaacagg agagcgcacg agggagcttc cagggggaaa cgcctggtat ctttatagtc
     1861 ctgtcgggtt tcgccacctc tgacttgagc gtcgattttt gtgatgctcg tcaggggggc
     1921 ggagcctatg gaaaaacgcc agcaacgcgg cctttttacg gttcctggtc ttttgctggc
     1981 cttttgctca catgttcttt cctgcgttat cccctgattc tgtggataac cgtattaccg
     2041 cctttgagtg agctgatacc gctcgccgca gccgaacgac cgagcgcagc gagtcagtga
     2101 gcgaggaagc ggaagagcgc ctgatgcggt attttctcct tacgcatctg tgcggtattt
     2161 cacaccgcaa tggtgcactc tcagtacaat ctgctctgat gccgcatagt taagccagta
     2221 tacactccgc tatcgctacg tgactgggtc atggctgcgc cccgacaccc gccaacaccc
     2281 gctgacgcgc cctgacgggc ttgtctgctc ccggcatccg cttacagaca agctgtgacc
     2341 gtctccggga gctgcatgtg tcagaggttt tcaccgtcat caccgaaacg cgcgaggcag
     2401 ctgcggtaaa gctcatcagc gtggtcgtga agcgattcac agatgtctgc ctgttcatcc
     2461 gcgtccagct cgttgagttt ctccagaagc gttaatgtct ggcttctgat aaagcgggcc
     2521 atgttaaggg cggttttttc ctgtttggtc actgatgcct ccgtgtaagg gggatttctg
     2581 ttcatggggg taatgatacc gatgaaacga gagaggatgc tcacgatacg ggttactgat
     2641 gatgaacatg cccggttact ggaacgttgt gagggtaaac aactggcggt atggatgcgg
     2701 cgggaccaga gaaaaatcac tcagggtcaa tgccagcgct tcgttaatac agatgtaggt
     2761 gttccacagg gtagccagca gcatcctgcg atgcagatcc ggaacataat ggtgcagggc
     2821 gctgacttcc gcgtttccag actttacgaa acacggaaac cgaagatcat tcatgttgtt
     2881 gctcaggtcg cagacgtttt gcagcagcag tcgcttcacg ttcgctcgcg tatcggtgat
     2941 tcattctgct aaccagtaag gcaaccccgc cagcctagcc gggtcctcaa cgacaggagc
     3001 acgatcatgc gcacccgtgg ggccgccatg ccggcgataa tggcctgctt ctcgccgaaa
     3061 cgtttggtgg cgggaccagt gacgaaggct tgagcgaggg cgtgcaagat tccgaatacc
     3121 gcaagcgaca ggccgatcat cgtcgcgctc cagcgaaagc ggtcctcgcc gaaaatgacc
     3181 cagagcgctg ccggcacctg tcctacgagt tgcatgataa agaagatagt cataagtgcg
     3241 gcgacgatag tcatgccccg cgcccaccgg aaggagctga ctgggttgaa ggctctcaag
     3301 ggcatcggtc gagatcccgg tgcctaatga gtgagctaac ttacattaat tgcgttgcgc
     3361 tcactgcccg ctttccagtc gggaaacctg tcgtgccagc tgcattaatg aatcggccaa
     3421 cgcgcgggga gaggcggttt gcgtattggg cgccagggtg gtttttcttt tcaccagtga
     3481 gacgggcaac agctgattgc ccttcaccgc ctggccctga gagagttgca gcaagcggtc
     3541 cacgctggtt tgccccagca ggcgaaaatc ctgtttgatg gtggttaacg gcgggatata
     3601 acatgagcta tcttcggtat cgtcgtatcc cactaccgag atgtccgcac caacgcgcag
     3661 cccggactcg gtaatggcgc gcattgcgcc cagcgccatc tgatcgttgg caaccagcat
     3721 cgcagtggga acgatgccct cattcagcat ttgcatggtt tgttgaaaac cggacatggc
     3781 actccagtcg ccttcccgtt ccgctatcgg ctgaatttga ttgcgagtga gatatttatg
     3841 ccagccagcc agacgcagac gcgccgagac agaacttaat gggcccgcta acagcgcgat
     3901 ttgctggtga cccaatgcga ccagatgctc cacgcccagt cgcgtaccat cttcatggga
     3961 gaaaataata ctgttgatgg gtgtctggtc agagacatca agaaataacg ccggaacatt
     4021 agtgcaggca gcttccacag caatggcatc ctggtcatcc agcggatagt taatgatcag
     4081 cccactgacg cgttgcgcga gaagattgtg caccgccgct ttacaggctt cgacgccgct
     4141 tcgttctacc atcgacacca ccacgctggc acccagttga tcggcgcgag atttaatcgc
     4201 cgcgacaatt tgcgacggcg cgtgcagggc cagactggag gtggcaacgc caatcagcaa
     4261 cgactgtttg cccgccagtt gttgtgccac gcggttggga atgtaattca gctccgccat
     4321 cgccgcttcc actttttccc gcgttttcgc agaaacgtgg ctggcctggt tcaccacgcg
     4381 ggaaacggtc tgataagaga caccggcata ctctgcgaca tcgtataacg ttactggttt
     4441 cacattcacc accctgaatt gactctcttc cgggcgctat catgccatac cgcgaaaggt
     4501 tttgcgccat tcgatggtgt ccgggatctc gacgctctcc cttatgcgac tcctgcatta
     4561 ggaagcagcc cagtagtagg ttgaggccgt tgagcaccgc cgccgcaagg aatggtgcat
     4621 gcaaggagat ggcgcccaac agtcccccgg ccacggggcc tgccaccata cccacgccga
     4681 aacaagcgct catgagcccg aagtggcgag cccgatcttc cccatcggtg atgtcggcga
     4741 tataggcgcc agcaaccgca cctgtggcgc cggtgatgcc ggccacgatg cgtccggcgt
     4801 agaggatcga gatcgatctc gatcccgcga aattaatacg actcactata ggggaattgt
     4861 gagcggataa caattcccct ctagaaataa ttttgtttaa ctttaagaag gagatataca
     4921 tatgtctact ccagactact gttggcagcg tataggtctt acactaagat gtacatttgc
     4981 tcacccaggg agaaaagccc atccactttc tgtcctagag gcaatagtta aaggtattgg
     5041 agaagcagct gggttgactg ctcctactat gagatcagta tttagatggt ccggaatgag
     5101 atcgtcgcaa atgactattg agagtggtag gatcttgtct ctcgaaattt tgttatttgg
     5161 tactgacgct ggagctgctt gtaattggca cgaaagagcc atacactact ttgatcctgg
     5221 tgcaccgggt agaaactttc aggttactgc ttccgaggcc cctgtcgaaa gacgatgggc
     5281 agagctattg gctggacgac aggctccagc agaatccaat gatgagtgct gtttggactt
     5341 tcttacccca ttacccttta ccccagctca aggacgtgga agaacatggc ttgatggtga
     5401 aggtctacgt agagccatgc aagacagatt gagaagatta tttggtgctg aggctgaact
     5461 tccccctatt cctgaggtcc tgcctgctta ttggtattat tgtcagattg ttcacgctgc
     5521 ttcctctcag ccaggtcata ataaatacct taatggatgt ttgggtcctt tgttgcttag
     5581 aggagaacac cttggggaat ggtggccttg gctggttcta ggtgaggaga ttggacttgg
     5641 tggacaagtt tcttttggac aaggtttatt cagactccat gctaagtcag ttccaattct
     5701 tgacgccagg ttgacggacc caaatcaaat tgctgctatt attgatcagc ttctattaag
     5761 acatgatgac ttagcagtaa gactctctaa tacccctcaa gccccagatc ttcatgagtt
     5821 ggctgtggag ttggctcaaa atctcagaga gggagcagct cctctcccat tccaagctat
     5881 cagagttcca agatcggacg gtagactccg tcaatttgag acacccgcag cacgagactt
     5941 agttattttg aatcatttga cgagactttt atcagagccg tttgatcgat tgttttctgt
     6001 gcacagtatc ggatacagaa aaggtcactc cagagaggat gcagtcgaaa gagttagagc
     6061 agctattgca gagggttgta ctcacgtttt ggagtctgat atttctgact tctttccgtc
     6121 tgttgactta aaacgactct tggcacgtct tgatgatgtt ttgccgcgtc gtgatgtaag
     6181 attgagacaa acactcgctg catatcttgg tgcaggatgg cgttacggtg aagggtcggt
     6241 ccaagctaga aatcgtggac ttccattagg atcaccattg agcccactcc tagcaaacct
     6301 ttacttggat tcatttgatt cccaactggg agctactgtt ccaggagtca ggttaattag
     6361 gtacgctgat gattttatta tacttactga atcagaagca gccgcaagag ctttattaga
     6421 cactgctaga gatgccgccg ccgctttagg tctagctttg aatttagaaa agactgctat
     6481 tagaccactc tcggatggtt ttgacttctt gggaataaga tttagtgctg acgctgctgc
     6541 tgaacaagct ggagatgaat cagctgatag tttaagaaaa gttctttata ttactgagcc
     6601 atacgctttt gttggatcaa atcatggtac tattgaagtg cacgccggtt ccaaatcctt
     6661 gggatcattc ccactggcta gaacagctgg tgtcgttact ttggtgccat gcactctctc
     6721 atctgctcta attgctcgtc ttgctgatca atgtattccc ttggctattg caggcacaca
     6781 aggtagacaa attgctactg tagctgggga tacggcaagg agattcgcaa ctgctgcaac
     6841 tcaagcaaat agacacgctt cattaggtga ggccggtaga tgtagggctg ctggagcctt
     6901 cgctactgct aaacttgcta attacatagc acttataaga caaagaggac cagcaggaac
     6961 agcagctcta gtggcacgtc ttgagaatgg tatagctgct attgcttcag caactgatat
     7021 agatgcaatt agaggtgtag aaggtgactg tgctcgtgag tgtttcccat ttattgctgg
     7081 atggattaat tctccagact tcccttggca gggcagaaga aggcatggtg agtttcctga
     7141 cagattaaat tctttgctaa attttggata tcatctgtta tttacgagaa ttaatgccct
     7201 attgcgtgtt tccggcctga acccttattt gggttttctt cacgcagcaa atggaaggta
     7261 tgaagccctg gcttgtgatg tacaagaggc atttagacct catattgata ggttggtcgt
     7321 aagactacta aatctcaagg ttattgaggc agctgacttt gaagaatctg aggaaggatg
     7381 gtggctaatt cgtccagcac gaacaagatt tcttcagcaa tttgctagag agatagagcg
     7441 acgacccatg aggcgacgtt attcccttgg tgaggctatt gagggccaag tcagagccct
     7501 gcacgcttgg ttaattgagg atagagagtt ggtcttgtat agatggtctg attcagacgt
     7561 gtaacgtacg ttaactttaa gaaggagaac ttaagatgag tgatatggcc ctgtatatcg
     7621 tcgcctatga cataactgac gatagagaaa ggcgtcaagc tgaacacatc cttcaaggat
     7681 tcgggttcag aaggcaaaag tctgttttcg agtgcagatt gactagggga tatttagcaa
     7741 ggttgcagca tgagttagct acaatcggaa tggagacagg gttcgttatg atttatcact
     7801 tagccccaaa tacccgacct tttacaatag gagaagtgcc tcacttccca gacgacgact
     7861 gggcctgggt aacttaactc gagatccggc tgctaacaaa gcccgaaagg aagctgagtt
     7921 ggctgctgcc accgctgagc aataactagc ataacccctt ggggcctcta aacgggtctt
     7981 gaggggtttt ttgctgaaag gaggaactat atccggata
//
