LOCUS       sequence-229881-        9216 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  To test the effect of sequence on TDP43 splicing activity.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 9216)
  AUTHORS   Schmidt HB, Barreau A, Rohatgi R
  TITLE     Phase separation-deficient TDP43 remains functional in splicing.
  JOURNAL   Nat Commun. 2019 Oct 25;10(1):4890. doi: 10.1038/s41467-019-12740-2.
  PUBMED    31653829
REFERENCE   2  (bases 1 to 9216)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; journalName: "Nat 
            Commun."; date: "2019-10-25"; volume: "10(1):4890. doi"; pages: " 
            10.1038/s41467-019-12740-2"
COMMENT     Sequence Label: pHBS1394 [IBB-GFP-mCherry3E]-[BFP-P2A-TDP43
            de...
FEATURES             Location/Qualifiers
     source          1..9216
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     polyA_signal    327..382
                     /label=beta-globin poly(A) signal
                     /note="rabbit beta-globin polyadenylation signal (Gil and 
                     Proudfoot, 1987)"
     intron          579..1151
                     /label=beta-globin intron
                     /note="intron from rabbit beta-globin gene"
     primer_bind     complement(1497..1516)
                     /label=mCherry-F
                     /note="mCherry, forward primer"
     primer_bind     1766..1784
                     /label=mCherry-R
                     /note="mCherry, reverse primer"
     regulatory      3406..3415
                     /label=Kozak sequence
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
                     /regulatory_class="other"
     enhancer        3568..3871
                     /label=CMV enhancer
                     /note="human cytomegalovirus immediate early enhancer"
     promoter        3872..4075
                     /label=CMV promoter
                     /note="human cytomegalovirus (CMV) immediate early 
                     promoter"
     primer_bind     4026..4046
                     /label=CMV-F
                     /note="Human CMV immediate early promoter, forward primer"
     regulatory      4137..4146
                     /label=Kozak sequence
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
                     /regulatory_class="other"
     CDS             4143..4844
                     /codon_start=1
                     /product="monomeric blue fluorescent protein"
                     /label=TagBFP
                     /note="mammalian codon-optimized"
                     /translation="MGSELIKENMHMKLYMEGTVDNHHFKCTSEGEGKPYEGTQTMRIK
                     VVEGGPLPFAFDILATSFLYGSKTFINHTQGIPDFFKQSFPEGFTWERVTTYEDGGVLT
                     ATQDTSLQDGCLIYNVKIRGVNFTSNGPVMQKKTLGWEAFTETLYPADGGLEGRNDMAL
                     KLVGGSHLIANAKTTYRSKKPAKNLKMPGVYYVDYRLERIKEANNETYVEQHEVAVARY
                     CDLPSKLGHKLN"
     misc_feature    4845..4910
                     /label=MCS
                     /note="multiple cloning site"
     CDS             4935..4991
                     /codon_start=1
                     /product="2A peptide from porcine teschovirus-1 
                     polyprotein"
                     /label=P2A
                     /note="Eukaryotic ribosomes fail to insert a peptide bond 
                     between the Gly and Pro residues, yielding separate 
                     polypeptides."
                     /translation="ATNFSLLKQAGDVEENPGP"
     protein_bind    complement(5786..5810)
                     /gene="mutant version of attB"
                     /label=attB2
                     /bound_moiety="BP Clonase(TM)"
                     /note="recombination site for the Gateway(R) BP reaction"
     intron          5865..6437
                     /label=beta-globin intron
                     /note="intron from rabbit beta-globin gene"
     polyA_signal    6634..6689
                     /label=beta-globin poly(A) signal
                     /note="rabbit beta-globin polyadenylation signal (Gil and 
                     Proudfoot, 1987)"
     primer_bind     complement(7087..7104)
                     /label=L4440
                     /note="L4440 vector, forward primer"
     rep_origin      complement(7258..7846)
                     /direction=LEFT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     complement(7338..7357)
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     CDS             complement(join(8017..8808,8809..8877))
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     8640..8659
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
     promoter        complement(8878..8982)
                     /gene="bla"
                     /label=AmpR promoter
     primer_bind     9050..9068
                     /label=pBRforEco
                     /note="pBR322 vectors, upsteam of EcoRI site, forward 
                     primer"
ORIGIN
        1 cgagttcata agagaagagg gacagctatg actgggagta gtcaggagag gaggaaaaat
       61 ctggctagta aaacatgtaa ggaaaatttt agggatgtta aagaaaaaaa taacacaaaa
      121 caaaatataa aaaaaatcta acctcaagtc aaggcttttc tatggaataa ggaatggaca
      181 gcagggggct gtttcatata ctgatgacct ctttatagcc aacctttgtt catggcagcc
      241 agcatatggg catatgttgc caaactctaa accaaatact cattctgatg ttttaaatga
      301 tttgccctcc catatgtcct tccgagtgag agacacaaaa aattccaaca cactattgca
      361 atgaaaataa atttccttta ttagccagaa gtcagatgct caaggggctt catgatgtcc
      421 ccataatttt tggcagaggg aaaaagatct cagtggtatt tgtgagccag ggcattggcc
      481 acaccagcca ccaccttctg ataggcagcc tgcacctgag gagtgaattc tttgccaaaa
      541 tgatgagaca gcacaacaac cagcacgttg cccaggagct gtaggaaaga gaagaaggca
      601 tgaacatggt tagcagaggg gcccggtttg gactcagagt attttatcct catctcaaac
      661 agtgtatatc attgtaacca taaagagaaa ggcaggatga tgaccagggt gtagttgttt
      721 ctaccaataa gaatatttcc acgccagcca gaatttatat gcagaaatat tctaccttat
      781 catttaatta taacaattgt tctctaaaac tgtgctgaag tacaatataa tataccctga
      841 ttgccttgaa aaaaaagtga ttagagaaag tacttacaat ctgacaaata aacaaaagtg
      901 aatttaaaaa ttcgttacaa atgcaagcta aagtttaacg aaaaagttac agaaaatgaa
      961 aagaaaataa gaggagacaa tggttgtcaa cagagtagaa agtgaaagaa acaaaattat
     1021 catgagggtc catggtgata caagggacat cttcccattc taaacaacac cctgaaaact
     1081 ttgccccctc catataacat gaattttaca atagcgaaaa agaaagaaca atcaagggtc
     1141 cccaaactca ccctgaagtt ctcagtctag agtcgagagg atcaatcact ttgtacaaga
     1201 aagctgggtc tagatagctt acttgtacag ctcgtccatg ccgccggtgg agtggcggcc
     1261 ctcggcgcgt tcgtactgtt ccacgatggt gtagtcctcg ttgtgggagg tgatgtccaa
     1321 cttgatgttg acgttgtagg cgccgggcag ctgcacgggc ttcttggcct tgtaggtggt
     1381 cttgacctca gcgtcgtagt ggccgccgtc cttcagcttc agcctctgct tgatctcgcc
     1441 cttcagggcg ccgtcctcgg ggtacatccg ctcggaggag gcctcccagc ccatggtctt
     1501 cttctgcatt acggggccgt cggaggggaa gttggtgccg cgcagcttca ccttgtagat
     1561 gaactcgccg tcctgcaggg aggagtcctg ggtcacggtc accacgccgc cgtcctcgaa
     1621 gttcatcacg cgctcccact tgaagccctc ggggaaggac agcttcaagt agtcggggat
     1681 gtcggcgggg tgcttcacgt aggccttgga gccgtacatg aactgagggg acaggatgtc
     1741 ccaggcgaag ggcagggggc cacccttggt caccttcagc ttggcggtct gggtgccctc
     1801 gtaggggcgg ccctgaggaa aaaaaaggaa agggcatgct cgccatgtgc aagatacagt
     1861 gttgaatgtg gtgcaaaata taaagatgtg gaagaaaaag ccactgaaaa taatatgagg
     1921 aaataaaaaa ctagagtaaa ttatcagtgg aacaatttct attatacaag acactacacc
     1981 catacattct cctaatgctc atgtaagaat ttctccaaaa ataccttcca gcactacaaa
     2041 ctagaaaaaa aaagagacat ggacaccaaa ttaagttctt aatagtgaag aacaaaagaa
     2101 ctaccttgcc tgctccagtg gatccagcaa ccgccaacaa ctgtcctctt tctatcttga
     2161 aattaatatc tttcaggaca ggagtaccaa gaagtgagaa attactgaag aagaggctgt
     2221 catcaccatt agaagttttt ctattgttat tgttttgttt tgctttctca aataattccc
     2281 caaatccctg ttaaaaaaaa acacacacac acacacacac acacacatca aaaataaaag
     2341 atgagtttgt cagatatttt caatagatgc ttgttttatg taccatactc acctcgccct
     2401 cgccctcgat ctcgaactcg tggccgttca cggagccctc catgtgcacc ttgaagcgca
     2461 tgaactcctt gatgatggcc atgttatcct cctcgccctt gctggttccg gtgcctccac
     2521 tttcatcttc acctttagtg ataccggctg ccgtcacgaa ctccttcagg accatgtgat
     2581 cgcgcttctc gttcgggtct ttgctcagcg tggtctgggt gctcagatag tggttgtccg
     2641 gcaggcgcac cgggccgtcg ccgatcgggg tgttctgctg tttgtggtcg gcttcctgct
     2701 ggctgccgtc ctcaacgttg tggcggatct tgaagttagc cttgatgccg ttcttctgct
     2761 tgtcggcttc gatacggacg ttgtggctgt tgtggttgta ctccagcttg tgacccagga
     2821 tgttgccgtc ctccttgaag tcgttgccct tcagctcgat gcggttcacc agggtgtcgc
     2881 cctcgaactt cacctccgcg cgggtcttgt aggtgccgtc gtccttgaac tcgatggtgc
     2941 gctcctggac gtagccttcc ggcatggcgg acttgaagaa gtcgtgacgc ttcatgtggt
     3001 ccgggtagcg gctgaagcac tgcacgccgt aggtcagggt ggtcacgagg gtcggccacg
     3061 gcaccggcag cttgccggtg gtgcagatga acttcagggt cagcttgccc tcggtggcat
     3121 cgccctcgcc ctcgccacgc acgctgaact tgtggccgtt tacgtcgccg tccagctcga
     3181 ctttgatagg cacagtacct gtaaatagtt cctctccttt actggtacca tcatcaggga
     3241 atgagcttac atttctcctc ttcagcatct ggtcatcctt cttagctttc ctcagctcca
     3301 cattgacctc tattctgcga cgcctcattt ctgtactgtc ttttcccttg ttcttgaatc
     3361 tgtgaagacg ggcagctggt gtattagcat tctcgttggt ggatcccatg gtggcaccgg
     3421 tgaattctcc aggcgatctg acggttcact aaacgagctc tgcttatata ggcctcccac
     3481 cgtacacgcc acctcgacat actcgagtag ttattaatag taatcaatta cggggtcatt
     3541 agttcatagc ccatatatgg agttccgcgt tacataactt acggtaaatg gcccgcctgg
     3601 ctgaccgccc aacgaccccc gcccattgac gtcaataatg acgtatgttc ccatagtaac
     3661 gccaataggg actttccatt gacgtcaatg ggtggagtat ttacggtaaa ctgcccactt
     3721 ggcagtacat caagtgtatc atatgccaag tacgccccct attgacgtca atgacggtaa
     3781 atggcccgcc tggcattatg cccagtacat gaccttatgg gactttccta cttggcagta
     3841 catctacgta ttagtcatcg ctattaccat ggtgatgcgg ttttggcagt acatcaatgg
     3901 gcgtggatag cggtttgact cacggggatt tccaagtctc caccccattg acgtcaatgg
     3961 gagtttgttt tggcaccaaa atcaacggga ctttccaaaa tgtcgtaaca actccgcccc
     4021 attgacgcaa atgggcggta ggcgtgtacg gtgggaggtc tatataagca gagctggttt
     4081 agtgaaccgt cagatccgct agggatcctc tagtcagctg acgcgttacc accggtgcca
     4141 ccatgggaag cgagctgatt aaggagaaca tgcacatgaa gctgtacatg gagggcaccg
     4201 tggacaacca tcacttcaag tgcacatccg agggcgaagg caagccctac gagggcaccc
     4261 agaccatgag aatcaaggtg gtcgagggcg gccctctccc cttcgccttc gacatcctgg
     4321 ctactagctt cctctacggc agcaagacct tcatcaacca cacccagggc atccccgact
     4381 tcttcaagca gtccttccct gagggcttca catgggagag agtcaccaca tacgaagacg
     4441 ggggcgtgct gaccgctacc caggacacca gcctccagga cggctgcctc atctacaacg
     4501 tcaagatcag aggggtgaac ttcacatcca acggccctgt gatgcagaag aaaacactcg
     4561 gctgggaggc cttcaccgag acgctgtacc ccgctgacgg cggcctggaa ggcagaaacg
     4621 acatggccct gaagctcgtg ggcgggagcc atctgatcgc aaacgccaag accacatata
     4681 gatccaagaa acccgctaag aacctcaaga tgcctggcgt ctactatgtg gactacagac
     4741 tggaaagaat caaggaggcc aacaacgaga cctacgtcga gcagcacgag gtggcagtgg
     4801 ccagatactg cgacctccct agcaaactgg ggcacaagct taattccgga ctcagatctc
     4861 gagctcaagc ttcgaattct gcagtcgacg gtaccgcggg cccgggatcc accggatcta
     4921 gaggaggaag cggagctact aacttcagcc tgctgaagca ggctggagac gtggaggaga
     4981 accctggacc tatgtctgaa tatattcggg taaccgaaga tgagaacgat gagcccattg
     5041 aaataccatc ggaagacgat gggacggtgc tgctctccac ggttacagcc cagtttccag
     5101 gggcgtgtgg gcttcgctac aggaatccag tgtctcagtg tatgagaggt gtccggctgg
     5161 tagaaggaat tctgcatgcc ccagatgctg gctggggaaa tctggtgtat gttgtcaact
     5221 atccaaaaga taacaaaaga aaaatggatg agacagatgc ttcatcagca gtgaaagtga
     5281 aaagagcagt ccagaaaaca tccgatttaa tagtgttggg tctcccatgg aaaacaaccg
     5341 aacaggacct gaaagagtat tttagtacct ttggagaagt tcttatggtg caggtcaaga
     5401 aagatcttaa gactggtcat tcaaaggggt ttggctttgt tcgttttacg gaatatgaaa
     5461 cacaagtgaa agtaatgtca cagcgacata tgatagatgg acgatggtgt gactgcaaac
     5521 ttcctaattc taagcaaagc caagatgagc ctttgagaag cagaaaagtg tttgtggggc
     5581 gctgtacaga ggacatgact gaggatgagc tgcgggagtt cttctctcag tacggggatg
     5641 tgatggatgt cttcatcccc aagccattca gggcctttgc ctttgttaca tttgcagatg
     5701 atcagattgc gcagtctctt tgtggagagg acttgatcat taaaggaatc agcgttcata
     5761 tatccaatgc cgaaccttag actagaccca gctttcttgt acaaagtggt tgatcctcta
     5821 ctagtaagct tgcatgcgat atctctagag ctgagaactt cagggtgagt ttggggaccc
     5881 ttgattgttc tttctttttc gctattgtaa aattcatgtt atatggaggg ggcaaagttt
     5941 tcagggtgtt gtttagaatg ggaagatgtc ccttgtatca ccatggaccc tcatgataat
     6001 tttgtttctt tcactttcta ctctgttgac aaccattgtc tcctcttatt ttcttttcat
     6061 tttctgtaac tttttcgtta aactttagct tgcatttgta acgaattttt aaattcactt
     6121 ttgtttattt gtcagattgt aagtactttc tctaatcact tttttttcaa ggcaatcagg
     6181 gtatattata ttgtacttca gcacagtttt agagaacaat tgttataatt aaatgataag
     6241 gtagaatatt tctgcatata aattctggct ggcgtggaaa tattcttatt ggtagaaaca
     6301 actacaccct ggtcatcatc ctgcctttct ctttatggtt acaatgatat acactgtttg
     6361 agatgaggat aaaatactct gagtccaaac cgggcccctc tgctaaccat gttcatgcct
     6421 tcttctcttt cctacagctc ctgggcaacg tgctggttgt tgtgctgtct catcattttg
     6481 gcaaagaatt cactcctcag gtgcaggctg cctatcagaa ggtggtggct ggtgtggcca
     6541 atgccctggc tcacaaatac cactgagatc tttttccctc tgccaaaaat tatggggaca
     6601 tcatgaagcc ccttgagcat ctgacttctg gctaataaag gaaatttatt ttcattgcaa
     6661 tagtgtgttg gaattttttg tgtctctcac tcggaaggac atatgggagg gcaaatcatt
     6721 taaaacatca gaatgagtat ttggtttaga gtttggcaac atatgcccat atgctggctg
     6781 ccatgaacaa aggttggcta taaagaggtc atcagtatat gaaacagccc cctgctgtcc
     6841 attccttatt ccatagaaaa gccttgactt gaggttagat tttttttata ttttgttttg
     6901 tgttattttt ttctttaaca tccctaaaat tttccttaca tgttttacta gccagatttt
     6961 tcctcctctc ctgactactc ccagtcatag ctgtccctct tctcttatgg agatccctcg
     7021 actgcattaa tgaatcggcc aacgcgcggg gagaggcggt ttgcgtattg ggcgctcttc
     7081 cgcttcctcg ctcactgact cgctgcgctc ggtcgttcgg ctgcggcgag cggtatcagc
     7141 tcactcaaag gcggtaatac ggttatccac agaatcaggg gataacgcag gaaagaacat
     7201 gtgagcaaaa ggccagcaaa aggccaggaa ccgtaaaaag gccgcgttgc tggcgttttt
     7261 ccataggctc cgcccccctg acgagcatca caaaaatcga cgctcaagtc agaggtggcg
     7321 aaacccgaca ggactataaa gataccaggc gtttccccct ggaagctccc tcgtgcgctc
     7381 tcctgttccg accctgccgc ttaccggata cctgtccgcc tttctccctt cgggaagcgt
     7441 ggcgctttct catagctcac gctgtaggta tctcagttcg gtgtaggtcg ttcgctccaa
     7501 gctgggctgt gtgcacgaac cccccgttca gcccgaccgc tgcgccttat ccggtaacta
     7561 tcgtcttgag tccaacccgg taagacacga cttatcgcca ctggcagcag ccactggtaa
     7621 caggattagc agagcgaggt atgtaggcgg tgctacagag ttcttgaagt ggtggcctaa
     7681 ctacggctac actagaagaa cagtatttgg tatctgcgct ctgctgaagc cagttacctt
     7741 cggaaaaaga gttggtagct cttgatccgg caaacaaacc accgctggta gcggtggttt
     7801 ttttgtttgc aagcagcaga ttacgcgcag aaaaaaagga tctcaagaag atcctttgat
     7861 cttttctacg gggtctgacg ctcagtggaa cgaaaactca cgttaaggga ttttggtcat
     7921 gagattatca aaaaggatct tcacctagat ccttttaaat taaaaatgaa gttttaaatc
     7981 aatctaaagt atatatgagt aaacttggtc tgacagttac caatgcttaa tcagtgaggc
     8041 acctatctca gcgatctgtc tatttcgttc atccatagtt gcctgactcc ccgtcgtgta
     8101 gataactacg atacgggagg gcttaccatc tggccccagt gctgcaatga taccgcgaga
     8161 cccacgctca ccggctccag atttatcagc aataaaccag ccagccggaa gggccgagcg
     8221 cagaagtggt cctgcaactt tatccgcctc catccagtct attaattgtt gccgggaagc
     8281 tagagtaagt agttcgccag ttaatagttt gcgcaacgtt gttgccattg ctacaggcat
     8341 cgtggtgtca cgctcgtcgt ttggtatggc ttcattcagc tccggttccc aacgatcaag
     8401 gcgagttaca tgatccccca tgttgtgcaa aaaagcggtt agctccttcg gtcctccgat
     8461 cgttgtcaga agtaagttgg ccgcagtgtt atcactcatg gttatggcag cactgcataa
     8521 ttctcttact gtcatgccat ccgtaagatg cttttctgtg actggtgagt actcaaccaa
     8581 gtcattctga gaatagtgta tgcggcgacc gagttgctct tgcccggcgt caacacggga
     8641 taataccgcg ccacatagca gaactttaaa agtgctcatc attggaaaac gttcttcggg
     8701 gcgaaaactc tcaaggatct taccgctgtt gagatccagt tcgatgtaac ccactcgtgc
     8761 acccaactga tcttcagcat cttttacttt caccagcgtt tctgggtgag caaaaacagg
     8821 aaggcaaaat gccgcaaaaa agggaataag ggcgacacgg aaatgttgaa tactcatact
     8881 cttccttttt caatattatt gaagcattta tcagggttat tgtctcatga gcggatacat
     8941 atttgaatgt atttagaaaa ataaacaaat aggggttccg cgcacatttc cccgaaaagt
     9001 gccacctgac gtctaagaaa ccattattat catgacatta acctataaaa ataggcgtat
     9061 cacgaggccc tttcgtcttc actcgacgcg gccagcttgg tcgagctgga tacttcccgt
     9121 ccgccagggg gacatgccgg cgatgctgaa ggtcgcgcgc attcccgatg aagaggccgg
     9181 ttaccgcctg ttgacctggt gggacgggca gggcgc
//
