LOCUS       sequence-254592-        5870 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  Complementation in Cryptococcus neoformans. Targets DNA constructs 
            to a Safe Haven Site 3, a small gene-free region. Contains the 
            nourseothricin resistance marker (NAT).
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 5870)
  AUTHORS   Erpf PE, Stephenson CJ, Fraser JA
  TITLE     amdS as a dominant recyclable marker in Cryptococcus neoformans.
  JOURNAL   Fungal Genet Biol. 2019 Jun 17;131:103241. doi: 
            10.1016/j.fgb.2019.103241.
  PUBMED    31220607
REFERENCE   2  (bases 1 to 5870)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; journalName: "Fungal 
            Genet Biol."; date: "2019-06-17"; volume: "131:103241. doi"; pages: 
            " 10.1016/j.fgb.2019.103241"
COMMENT     Sequence Label: pPEE27
FEATURES             Location/Qualifiers
     source          1..5870
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     promoter        794..898
                     /gene="bla"
                     /label=AmpR promoter
     CDS             join(899..967,968..1759)
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     complement(1117..1136)
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
     rep_origin      1930..2518
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     2419..2438
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     primer_bind     2672..2689
                     /label=L4440
                     /note="L4440 vector, forward primer"
     protein_bind    2806..2827
                     /label=CAP binding site
                     /bound_moiety="E. coli catabolite activator protein"
                     /note="CAP binding activates transcription in the presence 
                     of cAMP."
     promoter        join(2842..2847,2848..2865,2866..2872)
                     /label=lac promoter
                     /note="promoter for the E. coli lac operon"
     protein_bind    2880..2896
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     primer_bind     2885..2907
                     /label=M13/pUC Reverse
                     /note="In lacZ gene"
     primer_bind     2904..2920
                     /label=M13 rev
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     2904..2920
                     /label=M13 Reverse
                     /note="In lacZ gene. Also called M13-rev"
     CDS             2916..3281
                     /codon_start=1
                     /gene="lacZ fragment"
                     /product="LacZ-alpha fragment of beta-galactosidase"
                     /label=lacZ-alpha
                     /translation="MTMITPSAQLTLTKGNKSWSSTAVAAALELVDPPGCRNSISSLSI
                     PSTSRGGPVPNSPYSESYYARSLAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEEAR
                     TDRPSQQLRSLNGEWKL"
     primer_bind     2939..2959
                     /label=T3
                     /note="T3 promoter, forward primer"
     promoter        2941..2959
                     /label=T3 promoter
                     /note="promoter for bacteriophage T3 RNA polymerase"
     misc_feature    2972..3079
                     /label=MCS
                     /note="pBluescript multiple cloning site"
     primer_bind     2996..3012
                     /label=SK primer
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     2996..3012
                     /label=pBluescriptSK
                     /note="For pBluescript vector"
     primer_bind     complement(3046..3062)
                     /label=KS primer
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     complement(3047..3063)
                     /label=pBluescriptKS
                     /note="For pBluescript vector"
     primer_bind     complement(3087..3106)
                     /label=T7
                     /note="T7 promoter, forward primer"
     promoter        complement(3088..3106)
                     /label=T7 promoter
                     /note="promoter for bacteriophage T7 RNA polymerase"
     primer_bind     complement(3116..3133)
                     /label=M13 Forward
                     /note="In lacZ gene. Also called M13-F20 or M13 (-21) 
                     Forward"
     primer_bind     complement(3116..3132)
                     /label=M13 fwd
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     complement(3125..3147)
                     /label=M13/pUC Forward
                     /note="In lacZ gene"
     regulatory      5703..5712
                     /label=Kozak sequence
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
                     /regulatory_class="other"
ORIGIN
        1 ggtcttccca tacgaatgtt ccccatactc ccaattgcat ggcgctcggc acgactgagc
       61 agggggaaga aactgtcctt ctgcgtgcac catgtcgctg gataacccca cccagaaaac
      121 aaaccaatca tctacggtga ctggattggg cctcacgaaa gacgatcata ctcagttctc
      181 atagactcat atatgccctt tattattaaa taacatagat cagttttctc atggaaattg
      241 ttacatgagt cacaaccttt ccgcccaatc tgataacaat ctgtggatca gtttcatgaa
      301 cttgaaatgc cagacagtct gtttcgtaga aggaagcgtt caagttttga gggtttgagg
      361 agtttgatga tatagtcatt atgaggacga aaggaacgac tacacttttt ggcctcagcc
      421 atgttgaaac atcacagaga tcaatgagga gagataacgc acacgataag gaggcacagg
      481 tcttcgaaaa acctttattt attcacccgt aagatatgtc tcccactatc tctctactgt
      541 ctactaccct gagatccaac atgggactgt caatcctgca agatcctgag aaaataaggt
      601 caagctcttg taacgtagca gcaggttggg aggtaaaata tgttgccaga tgtaggccaa
      661 agtaacaaac agcctttacc tcatcagcaa caaatccatg taatgtgtaa acttctaggg
      721 ggcattaaga ggcaccgctt gagatgtacg gccgctacag ggcgcgtcag gtggcacttt
      781 tcggggaaat gtgcgcggaa cccctatttg tttatttttc taaatacatt caaatatgta
      841 tccgctcatg agacaataac cctgataaat gcttcaataa tattgaaaaa ggaagagtat
      901 gagtattcaa catttccgtg tcgcccttat tccctttttt gcggcatttt gccttcctgt
      961 ttttgctcac ccagaaacgc tggtgaaagt aaaagatgct gaagatcagt tgggtgcacg
     1021 agtgggttac atcgaactgg atctcaacag cggtaagatc cttgagagtt ttcgccccga
     1081 agaacgtttt ccaatgatga gcacttttaa agttctgcta tgtggcgcgg tattatcccg
     1141 tattgacgcc gggcaagagc aactcggtcg ccgcatacac tattctcaga atgacttggt
     1201 tgagtactca ccagtcacag aaaagcatct tacggatggc atgacagtaa gagaattatg
     1261 cagtgctgcc ataaccatga gtgataacac tgcggccaac ttacttctga caacgatcgg
     1321 aggaccgaag gagctaaccg cttttttgca caacatgggg gatcatgtaa ctcgccttga
     1381 tcgttgggaa ccggagctga atgaagccat accaaacgac gagcgtgaca ccacgatgcc
     1441 tgtagcaatg gcaacaacgt tgcgcaaact attaactggc gaactactta ctctagcttc
     1501 ccggcaacaa ttaatagact ggatggaggc ggataaagtt gcaggaccac ttctgcgctc
     1561 ggcccttccg gctggctggt ttattgctga taaatctgga gccggtgagc gtgggtctcg
     1621 cggtatcatt gcagcactgg ggccagatgg taagccctcc cgtatcgtag ttatctacac
     1681 gacggggagt caggcaacta tggatgaacg aaatagacag atcgctgaga taggtgcctc
     1741 actgattaag cattggtaac tgtcagacca agtttactca tatatacttt agattgattt
     1801 aaaacttcat ttttaattta aaaggatcta ggtgaagatc ctttttgata atctcatgac
     1861 caaaatccct taacgtgagt tttcgttcca ctgagcgtca gaccccgtag aaaagatcaa
     1921 aggatcttct tgagatcctt tttttctgcg cgtaatctgc tgcttgcaaa caaaaaaacc
     1981 accgctacca gcggtggttt gtttgccgga tcaagagcta ccaactcttt ttccgaaggt
     2041 aactggcttc agcagagcgc agataccaaa tactgttctt ctagtgtagc cgtagttagg
     2101 ccaccacttc aagaactctg tagcaccgcc tacatacctc gctctgctaa tcctgttacc
     2161 agtggctgct gccagtggcg ataagtcgtg tcttaccggg ttggactcaa gacgatagtt
     2221 accggataag gcgcagcggt cgggctgaac ggggggttcg tgcacacagc ccagcttgga
     2281 gcgaacgacc tacaccgaac tgagatacct acagcgtgag ctatgagaaa gcgccacgct
     2341 tcccgaaggg agaaaggcgg acaggtatcc ggtaagcggc agggtcggaa caggagagcg
     2401 cacgagggag cttccagggg gaaacgcctg gtatctttat agtcctgtcg ggtttcgcca
     2461 cctctgactt gagcgtcgat ttttgtgatg ctcgtcaggg gggcggagcc tatggaaaaa
     2521 cgccagcaac gcggcctttt tacggttcct ggccttttgc tggccttttg ctcacatgtt
     2581 ctttcctgcg ttatcccctg attctgtgga taaccgtatt accgcctttg agtgagctga
     2641 taccgctcgc cgcagccgaa cgaccgagcg cagcgagtca gtgagcgagg aagcggaaga
     2701 gcgcccaata cgcaaaccgc ctctccccgc gcgttggccg attcattaat gcagctggca
     2761 cgacaggttt cccgactgga aagcgggcag tgagcgcaac gcaattaatg tgagttagct
     2821 cactcattag gcaccccagg ctttacactt tatgcttccg gctcgtatgt tgtgtggaat
     2881 tgtgagcgga taacaatttc acacaggaaa cagctatgac catgattacg ccaagcgcgc
     2941 aattaaccct cactaaaggg aacaaaagct ggagctccac cgcggtggcg gccgctctag
     3001 aactagtgga tcccccgggc tgcaggaatt cgatatcaag cttatcgata ccgtcgacct
     3061 cgaggggggg cccggtaccc aattcgccct atagtgagtc gtattacgcg cgctcactgg
     3121 ccgtcgtttt acaacgtcgt gactgggaaa accctggcgt tacccaactt aatcgccttg
     3181 cagcacatcc ccctttcgcc agctggcgta atagcgaaga ggcccgcacc gatcgccctt
     3241 cccaacagtt gcgcagcctg aatggcgaat ggaaattgta agcgttaata ttttgttaaa
     3301 attcgcgtta aatttttgtt aaatcagctc atttttttaa ccaataggcc gaaatcggca
     3361 aaatccctta taaatcaaaa gaatagaccg agatagggtt gagtccatgg ctgcgaggat
     3421 gtgagctgga gagcggcgca cgggaagggg aggactcaca taagcatgca ggattcgagt
     3481 ggcatggtgt gcactgagtg tatggttgtc ggaggagagg atgatggtaa caacaatagc
     3541 agcaacgtca ctcgacgcgc gtccggtgtg ccacacgggg taacgccgag tcgccgtcag
     3601 ggtcgccgag accactctca cagcgtcacc gttggcacca gctcagctta cagcttctat
     3661 cctccgccag catccacata catcccctat accgcatccc ccacccactg cccaaggtga
     3721 gtcatcttcc cgcccccttc ccttgcccgc cactcagtcc tccatcctcc actaatccac
     3781 cttatcgcac ccaccgccta tcgcacatcc gagcacaatg ctgggcctgc caggggctgc
     3841 tagatggtgc tctccccacg ctgatctgca tgccggccat tggatcatgg gtgctaggtg
     3901 ctgggtgctg gatgttggat gctggatgct gggtgcacgc ttggtcattt ccttccagga
     3961 ttgacggtcg ccgagaggac gacgtggcgt tcgacaacga gggccgatag caccgcatcg
     4021 cctcgacctg catccatctc gccttgtcct tttggtgcaa caatccatcc gtgctggtgc
     4081 cacacgcata gctggaagag atggatgtgc gttgaacaga gctgccgtca ggactttttg
     4141 gtgcacggac cctattgtcc tccccaatct tcaccgcgtc tcctaatatg cagcctcttt
     4201 gctaattgtc tttttccatt agtaaactcg cccaacatgt ctatggctgc cgccactctt
     4261 gacgacactg cttaccgata ccgtacctcc gtccctggcg acgccgaggc catcgaggcc
     4321 cttgacggct ccttcaccac cgacaccgtc ttccgtgtca ccgccaccgg cgacggcttc
     4381 acccttcgag aggttcctgt tgaccctccc cttaccaagg ttttccccga cgacgagtct
     4441 gacgacgagt ctgacgacgg cgaggacggc gaccctgact cccgaacttt cgtcgcttac
     4501 ggcgacgacg gcgaccttgc tggcttcgtt gtcgtctctt actccggctg gaaccgtcga
     4561 cttaccgtcg aggacatcga ggtcgcccct gagcaccgag gccacggcgt cggccgtgct
     4621 ttgatgggcc tcgctactga gttcgcccgt gagcgaggcg ccggccacct ctggcttgag
     4681 gtcaccaacg ttaacgcccc tgctatccac gcttaccgac gaatgggctt caccctctgc
     4741 ggccttgaca ccgcccttta cgacggcacc gcctctgacg gcgagcaggc tctctacatg
     4801 tccatgccct gcccctaaga attcgtgaag gcggtaaggg gttaattttc cttagagggt
     4861 gtatatatac atattagaga agtgatacaa ttttagcaca ctgcgaattc gagacagaca
     4921 tcgtgtcaat catctttttt gacattatat gcccattaat ctatctacag acaacaatac
     4981 catccttccc accctcagca acgccgttga atcctcagga tcttcatggc tccttgtctc
     5041 tgaaaccagg aagctagttt ctacatctct tccgtgttaa tacagataaa ccgcccgaat
     5101 aggttgggag gaaatttcag aggcttatgt tggtatcggc tgacgttgag ctggaaaaga
     5161 aaacatagct caaattacga tactacagta atgcgagaat aatacttcat gatgacaagc
     5221 cgctgctgca ctagcagtgc gtaaactgcc tgcctcatca ccagctgcat cgatctctca
     5281 tgagtcatga ctgacccagc gcttcatgaa acggcttctc cgtgctgacg gcatccacct
     5341 gtacaggctg ccacgcagca gcattttatt ccgttataag cactcttttc aatccctctt
     5401 catccgtcac cgctgctcaa tttcagctca agatcggtcc catccagtac tggccacatg
     5461 ttgagtgacg aactcccagc ccctgattca cgatgcgggt agctttgttc ttgatgcttg
     5521 agaccctttg gcaggtgccc gtcactcttc agctcttgcg ctgataagtt tcatttgtga
     5581 accaagaaga agagttctac catttgcagt gcgtatttat gagaagaagc tggtggccgt
     5641 gtggtgcact tgctggctat tgccggcttg ttgcagataa agccacaagt aagaaagatg
     5701 gagccaccat ggctgcatcc cgattgtctg tggcggtaag ccattgatgg gatggagata
     5761 gcacctcacg gctgtgaacg atcgacggat gacaagacgg aactcctctt gcagaaagtg
     5821 cgtgacgagt actcgaatac tgttaattaa cacaagtatc gtggcgcgcc
//
