LOCUS       sequence-264990-        3531 bp    DNA     linear   UNA 15-DEC-2025
DEFINITION  Intersectional viral expression of ChR2-mCherry in cells expressing 
            Flp AND NOT Cre.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      natural DNA sequence
  ORGANISM  unspecified
REFERENCE   1  (bases 1 to 3531)
  AUTHORS   Fenno LE, Ramakrishnan C, Kim YS, Evans KE, Lo M, Vesuna S, Inoue M,
            Cheung KYM, Yuen E, Pichamoorthy N, Hong ASO, Deisseroth K
  TITLE     Comprehensive Dual- and Triple-Feature Intersectional Single-Vector 
            Delivery of Diverse Functional Payloads to Cells of Behaving 
            Mammals.
  JOURNAL   Neuron. 2020 Jun 20. pii: S0896-6273(20)30432-3. doi: 
            10.1016/j.neuron.2020.06.003.
  PUBMED    32574559
REFERENCE   2  (bases 1 to 3531)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; journalName: "Neuron. 
            2020 Jun 20. pii: S0896-6273(20)30432-3. doi: 
            10.1016/j.neuron.2020.06.003."
COMMENT     Sequence Label: pAAV-nEF-Coff/Fon-ChR2-mCherry
FEATURES             Location/Qualifiers
     source          1..3531
                     /mol_type="genomic DNA"
                     /organism="unspecified"
     promoter        33..244
                     /label=EF-1-alpha core promoter
                     /note="core promoter for human elongation factor 
                     EF-1-alpha"
     LTR             257..525
                     /label=5' LTR (truncated)
                     /note="truncated 5' long terminal repeat (LTR) from human 
                     T-cell leukemia virus (HTLV) type 1"
     protein_bind    553..586
                     /label=FRT3
                     /bound_moiety="FLP recombinase from the Saccharomyces 
                     cerevisiae 2u plasmid"
                     /note="supports FLP-mediated excision with other FRT3 sites
                     (Bosch et al., 2015)"
     primer_bind     complement(957..976)
                     /label=mCherry-F
                     /note="mCherry, forward primer"
     protein_bind    complement(1122..1155)
                     /label=lox2272
                     /bound_moiety="Cre recombinase"
                     /note="Cre-mediated recombination occurs in the 8-bp core 
                     sequence (AAGTATCC) (Shaw et al., 2021). lox2272 sites are 
                     compatible with each other, but incompatible with loxP or 
                     loxN sites (Lee and Saito, 1988)."
     protein_bind    complement(1206..1239)
                     /label=loxN
                     /bound_moiety="Cre recombinase"
                     /note="Cre-mediated recombination occurs in the 8-bp core 
                     sequence (AGGTATAC) (Shaw et al., 2021). loxN sites are 
                     compatible with each other, but incompatible with loxP or 
                     lox2272 sites."
     primer_bind     1438..1456
                     /label=mCherry-R
                     /note="mCherry, reverse primer"
     protein_bind    2222..2255
                     /label=lox2272
                     /bound_moiety="Cre recombinase"
                     /note="Cre-mediated recombination occurs in the 8-bp core 
                     sequence (AAGTATCC) (Shaw et al., 2021). lox2272 sites are 
                     compatible with each other, but incompatible with loxP or 
                     loxN sites (Lee and Saito, 1988)."
     protein_bind    2306..2339
                     /label=loxN
                     /bound_moiety="Cre recombinase"
                     /note="Cre-mediated recombination occurs in the 8-bp core 
                     sequence (AGGTATAC) (Shaw et al., 2021). loxN sites are 
                     compatible with each other, but incompatible with loxP or 
                     lox2272 sites."
     regulatory      2775..2784
                     /label=Kozak sequence
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
                     /regulatory_class="other"
     protein_bind    complement(2791..2824)
                     /label=FRT3
                     /bound_moiety="FLP recombinase from the Saccharomyces 
                     cerevisiae 2u plasmid"
                     /note="supports FLP-mediated excision with other FRT3 sites
                     (Bosch et al., 2015)"
     misc_feature    2933..3521
                     /label=WPRE
                     /note="woodchuck hepatitis virus posttranscriptional 
                     regulatory element"
     primer_bind     complement(2986..3006)
                     /label=WPRE-R
                     /note="WPRE, reverse primer"
     CDS             complement(3404..3415)
                     /codon_start=1
                     /product="Factor Xa recognition and cleavage site"
                     /label=Factor Xa site
                     /translation="IEGR"
ORIGIN
        1 aaggatctgc gatcgctccg gtgcccgtca gtgggcagag cgcacatcgc ccacagtccc
       61 cgagaagttg gggggagggg tcggcaattg aacgggtgcc tagagaaggt ggcgcggggt
      121 aaactgggaa agtgatgtcg tgtactggct ccgccttttt cccgagggtg ggggagaacc
      181 gtatataagt gcagtagtcg ccgtgaacgt tctttttcgc aacgggtttg ccgccagaac
      241 acagctgaag cttcgagggg ctcgcatctc tccttcacgc gcccgccgcc ctacctgagg
      301 ccgccatcca cgccggttga gtcgcgttct gccgcctccc gcctgtggtg cctcctgaac
      361 tgcgtccgcc gtctaggtaa gtttaaagct caggtcgaga ccgggccttt gtccggcgct
      421 cccttggagc ctacctagac tcagccggct ctccacgctt tgcctgaccc tgcttgctca
      481 actctacgtc tttgtttcgt tttctgttct gcgccgttac agatccaagc tgtgaccggc
      541 gcctacggat ccgaagttcc tattcttcaa atagtatagg aacttcgcag agtagtagct
      601 ggattgtagc tgctattagc aatctaaaac ctcttagaag ttcctattct tcaaaaggta
      661 taggaacttc ggcgcgcctt acttgtacag ctcgtccatg ccgccggtgg agtggcggcc
      721 ctcggcgcgt tcgtactgtt ccacgatggt gtagtcctcg ttgtgggagg tgatgtccaa
      781 cttgatgttg acgttgtagg cgccgggcag ctgcacgggc ttcttggcct tgtaggtggt
      841 cttgacctca gcgtcgtagt ggccgccgtc cttcagcttc agcctctgct tgatctcgcc
      901 cttcagggcg ccgtcctcgg ggtacatccg ctcggaggag gcctcccagc ccatggtctt
      961 cttctgcatt acggggccgt cggaggggaa gttggtgccg cgcagcttca ccttgtagat
     1021 gaactcgccg tcctgcaggg aggagtcctg tgggacgaca tgacttaacc agttaaccat
     1081 gttctctgaa catgagaagg gctggccact ctccagtcga cataacttcg tataggatac
     1141 tttatacgaa gttatgcaga atggtagctg gattgtagct gctattagca atatgaaacc
     1201 tcttaataac ttcgtatagt ataccttata cgaagttata ctagtcctcc tgtactcacc
     1261 tgggtcacgg tcaccacgcc gccgtcctcg aagttcatca cgcgctccca cttgaagccc
     1321 tcggggaagg acagcttcaa gtagtcgggg atgtcggcgg ggtgcttcac gtaggccttg
     1381 gagccgtaca tgaactgagg ggacaggatg tcccaggcga agggcagggg gccacccttg
     1441 gtcaccttca gcttggcggt ctgggtgccc tcgtaggggc ggccctcgcc ctcgccctcg
     1501 atctcgaact cgtggccgtt cacggagccc tccatgtgca ccttgaagcg catgaactcc
     1561 ttgatgatgg ccatgttatc ctcctcgccc ttgctcacgg cggccgctgg cacggctccg
     1621 gcctcggctt cgtcttcgac gagagtctcg acctcgatct ccgttccgcc gatgttcagt
     1681 ttggtggttt tgcggatatc tccgtgaatc aatatgtgct cgtggatcag gacgcgcagg
     1741 tagtgtccca acaaccccca acaattttta ctcatcagat caataatcgt gtgacctacg
     1801 gtggagccat agacgctcag gacgccaaaa ccttcgggcc ccaaaatgaa gagaattggg
     1861 aacatacccc agctcacgaa aaacagccat gccatgccgg tcacgacctg gcggcaccga
     1921 ccctttggca cagtatgata accctcgata tatgctttgg cggcgtgaaa aaatgtgttc
     1981 gcgccatagc acaatccaag acaaaagaag atgactttaa catagccggt tgccatggcg
     2041 ctggtagccc cccacacgat agtcccgatg tctgagacaa ggagtcccat ggttctcctg
     2101 ctgtagtcgt tgctcaggcc taaacacatg agaaatagag tcataagcac atgggtcaca
     2161 tacaggagat atgtatataa cattaataca atttataaaa aaaagggggg gcacaggtac
     2221 cataacttcg tataaagtat cctatacgaa gttatttgcc ttaacccaga aattatcact
     2281 gttattcttt agaatggtgc aaagaataac ttcgtataag gtatactata cgaagttatg
     2341 ctagcaaccc cgacacttac cggtgaggtt gctcaggcgg ataaggatga caggacaagt
     2401 gagcagccac tctgcatagc gcagccactg cacccggtgt cctgtggcaa ggtagagcat
     2461 agagggattc ttaaactcaa aaaagaactc gagaatcacc ttaaccattt caatggcgca
     2521 cacatagatc tcctcccagc cgcatgtaga tttccaggtt tggtaggcat agaacatcag
     2581 cagcaaaatg ctgaatcctg ctgcaagcca ctgcaggaca tttgacgcgg tctgagcgcc
     2641 gttcgtgccg cgagattcaa tccatccggc acagtaacat tgatcctcag ggaccaggac
     2701 ggacccgttc accaccacag gattagtaac gaacaaaagt tcgcgtccga cggcagacaa
     2761 agcgccgcca tagtccatgg tggcgagctc gaagttccta tactatttga agaataggaa
     2821 cttcttgcct taacccagaa attatcactg ttattcttta gaatggtgca aagagaagtt
     2881 cctatacctt ttgaagaata ggaacttcga attcgatatc aagcttatcg ataatcaacc
     2941 tctggattac aaaatttgtg aaagattgac tggtattctt aactatgttg ctccttttac
     3001 gctatgtgga tacgctgctt taatgccttt gtatcatgct attgcttccc gtatggcttt
     3061 cattttctcc tccttgtata aatcctggtt gctgtctctt tatgaggagt tgtggcccgt
     3121 tgtcaggcaa cgtggcgtgg tgtgcactgt gtttgctgac gcaaccccca ctggttgggg
     3181 cattgccacc acctgtcagc tcctttccgg gactttcgct ttccccctcc ctattgccac
     3241 ggcggaactc atcgccgcct gccttgcccg ctgctggaca ggggctcggc tgttgggcac
     3301 tgacaattcc gtggtgttgt cggggaaatc atcgtccttt ccttggctgc tcgcctgtgt
     3361 tgccacctgg attctgcgcg ggacgtcctt ctgctacgtc ccttcggccc tcaatccagc
     3421 ggaccttcct tcccgcggcc tgctgccggc tctgcggcct cttccgcgtc ttcgccttcg
     3481 ccctcagacg agtcggatct ccctttgggc cgcctccccg catcgatacc g
//
