LOCUS       sequence-290542-        7802 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  Bacterial Expression of DmPAN2_468-1241.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 7802)
  AUTHORS   Jonas S, Christie M, Peter D, Bhandari D, Loh B, Huntzinger E, 
            Weichenrieder O, Izaurralde E
  TITLE     An asymmetric PAN3 dimer recruits a single PAN2 exonuclease to 
            mediate mRNA deadenylation and decay.
  JOURNAL   Nat Struct Mol Biol. 2014 Jul;21(7):599-608. doi: 10.1038/nsmb.2837.
            Epub 2014 Jun 1.
  PUBMED    24880343
REFERENCE   2  (bases 1 to 7802)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; doi: "10.1038/nsmb.2837";
            journalName: "Nat Struct Mol Biol"; date: "2014-07"; volume: "21"; 
            issue: "7"; pages: "599-608"
COMMENT     Sequence Label: pnYC-NpM-DmPAN2_468-1241_Y
FEATURES             Location/Qualifiers
     source          1..7802
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     primer_bind     2294..2313
                     /label=pBRrevBam
                     /note="pBR322 vectors, tet region, downstream of BamHI, 
                     reverse primer"
     primer_bind     2402..2421
                     /label=T7
                     /note="T7 promoter, forward primer"
     promoter        2402..2420
                     /label=T7 promoter
                     /note="promoter for bacteriophage T7 RNA polymerase"
     protein_bind    2421..2445
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     RBS             2460..2482
                     /note="efficient ribosome binding site from bacteriophage 
                     T7 gene 10 (Olins and Rangwala, 1989)"
     CDS             2489..3589
                     /codon_start=1
                     /gene="malE (mutated)"
                     /product="maltose binding protein from E. coli"
                     /label=MBP
                     /note="This version of the gene does not encode a signal 
                     sequence, so MBP will remain in the cytosol."
                     /translation="METEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLE
                     EKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKL
                     IAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIA
                     ADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGE
                     TAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFL
                     ENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAF
                     WYAVRTAVINAASGRQTVDEALKDAQT"
     CDS             3605..3628
                     /codon_start=1
                     /product="recognition and cleavage site for human 
                     rhinovirus 3C and PreScission proteases"
                     /label=HRV 3C site
                     /translation="LEVLFQGP"
     primer_bind     complement(6034..6052)
                     /label=T7 Term
                     /note="T7 terminator, reverse primer"
     terminator      6048..6095
                     /label=T7 terminator
                     /note="transcription terminator for bacteriophage T7 RNA 
                     polymerase"
     promoter        complement(join(6270..6275,6276..6292,6293..6298))
                     /label=tet promoter
                     /note="E. coli promoter for tetracycline efflux protein 
                     gene"
     rep_origin      6410..6955
                     /direction=RIGHT
                     /label=p15A ori
                     /note="Plasmids containing the medium-copy-number p15A 
                     origin of replication can be propagated in E. coli cells 
                     that contain a second plasmid with the ColE1 origin.
                     "
     primer_bind     6856..6875
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     primer_bind     7072..7089
                     /label=L4440
                     /note="L4440 vector, forward primer"
     promoter        7481..7583
                     /label=cat promoter
                     /note="promoter of the E. coli cat gene encoding 
                     chloramphenicol acetyltransferase"
     CDS             join(7584..7802,1..441)
                     /codon_start=1
                     /gene="cat"
                     /product="chloramphenicol acetyltransferase"
                     /label=CmR
                     /note="confers resistance to chloramphenicol"
                     /translation="MEKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFL
                     KTVKKNKHKFYPAFIHILARLMNAHPEFGMAMKDGELVIWDSVHPCYTVFHEQTETFSS
                     LWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANM
                     DNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQGGA"
     primer_bind     complement(7650..7669)
                     /label=CAT-R
                     /note="Chloramphenicol resistance gene, reverse primer"
ORIGIN
        1 ggtatggcaa tgaaagacgg tgagctggtg atatgggata gtgttcaccc ttgttacacc
       61 gttttccatg agcaaactga aacgttttca tcgctctgga gtgaatacca cgacgatttc
      121 cggcagtttc tacacatata ttcgcaagat gtggcgtgtt acggtgaaaa cctggcctat
      181 ttccctaaag ggtttattga gaatatgttt ttcgtctcag ccaatccctg ggtgagtttc
      241 accagttttg atttaaacgt ggccaatatg gacaacttct tcgcccccgt tttcaccatg
      301 ggcaaatatt atacgcaagg cgacaaggtg ctgatgccgc tggcgattca ggttcatcat
      361 gccgtctgtg atggcttcca tgtcggcaga atgcttaatg aattacaaca gtactgcgat
      421 gagtggcagg gcggggcgta atttttttaa ggcagttatt ggtgccctta aacgcctggt
      481 gctacgcctg aataagtgat aataagcgga tgaatggcag aaattcgaaa gcaaattcga
      541 cccggtcgtc ggttcagggc agggtcgtta aatagccgct tatgtctatt gctggtttac
      601 cggtttattg actaccggaa gcagtgtgac cgtgtgcttc tcaaatgcct gaggccagtt
      661 tgctcaggct ctccccgtgg aggtaataat tgacgatatg atcatttatt ctgcctccca
      721 gagcctgata aaaacggtta gcgcttcgtt aatacagatg taggtgttcc acagggtagc
      781 cagcagcatc ctgcgatgca gatccggaac ataatggtgc agggcgcttg tttcggcgtg
      841 ggtatggtgg caggccccgt ggccggggga ctgttgggcg ctgccggcac ctgtcctacg
      901 agttgcatga taaagaagac agtcataagt gcggcgacga tagtcatgcc ccgcgcccac
      961 cggaaggagc taccggacag cggtgcggac tgttgtaact cagaataaga aatgaggccg
     1021 ctcatggcgt tgactctcag tcatagtatc gtggtatcac cggttggttc cactctctgt
     1081 tgcgggcaac ttcagcagca cgtaggggac ttccgcgttt ccagacttta cgaaacacgg
     1141 aaaccgaaga ccattcatgt tgttgctcag gtcgcagacg ttttgcagca gcagtcgctt
     1201 cacgttcgct cgcgtatcgg tgattcattc tgctaaccag taaggcaacc ccgccagcct
     1261 agccgggtcc tcaacgacag gagcacgatc atgcgcaccc gtggccagga cccaacgctg
     1321 cccgagatgc gccgcgtgcg gctgctggag atggcggacg cgatggatat gttctgccaa
     1381 gggttggttt gcgcattcac agttctccgc aagaattgat tggctccaat tcttggagtg
     1441 gtgaatccgt tagcgaggtg ccgccggctt ccattcaggt cgaggtggcc cggctccatg
     1501 caccgcgacg caacgcgggg aggcagacaa ggtatagggc ggcgcctaca atccatgcca
     1561 acccgttcca tgtgctcgcc gaggcggcat aaatcgccgt gacgatcagc ggtccagtga
     1621 tcgaagttag gctggtaaga gccgcgagcg atccttgaag ctgtccctga tggtcgtcat
     1681 ctacctgcct ggacagcatg gcctgcaacg cgggcatccc gatgccgccg gaagcgagaa
     1741 gaatcataat ggggaaggcc atccagcctc gcgtcgcgaa cgccagcaag acgtagccca
     1801 gcgcgtcggc cgccatgccg gcgataatgg cctgcttctc gccgaaacgt ttggtggcgg
     1861 gaccagtgac gaaggcttga gcgagggcgt gcaagattcc gaataccgca agcgacaggc
     1921 cgatcatcgt cgcgctccag cgaaagcggt cctcgccgaa aatgacccag agcgctgccg
     1981 gcacctgtcc tacgagttgc atgataaaga agacagtcat aagtgcggcg acgatagtca
     2041 tgccccgcgc ccaccggaag gagctgactg ggttgaaggc tctcaagggc atcggtcgac
     2101 gctctccctt atgcgactcc tgcattagga agcagcccag tagtaggttg aggccgttga
     2161 gcaccgccgc cgcaaggaat ggtgcatgca aggagatggc gcccaacagt cccccggcca
     2221 cggggcctgc caccataccc acgccgaaac aagcgctcat gagcccgaag tggcgagccc
     2281 gatcttcccc atcggtgatg tcggcgatat aggcgccagc aaccgcacct gtggcgccgg
     2341 tgatgccggc cacgatgcgt ccggcgtaga ggatcagact aagatctcga tcccgcgaaa
     2401 ttaatacgac tcactatagg ggaattgtga gcggataaca attccccact agtaataatt
     2461 ttgtttaact ttaagaagga gatataccat ggaaactgaa gaaggtaaac tggtaatctg
     2521 gattaacggc gataaaggct ataacggtct cgctgaagtc ggtaagaaat tcgagaaaga
     2581 taccggaatt aaagtcaccg ttgagcatcc ggataaactg gaagagaaat tcccacaggt
     2641 tgcggcaact ggcgatggcc ctgacattat cttctgggca cacgaccgct ttggtggcta
     2701 cgctcaatct ggcctgttgg ctgaaatcac cccggacaaa gcgttccagg acaagctgta
     2761 tccgtttacc tgggatgccg tacgttacaa cggcaagctg attgcttacc cgatcgctgt
     2821 tgaagcgtta tcgctgattt ataacaaaga cctgctgccg aacccgccaa aaacctggga
     2881 agagatcccg gcgctggata aagaactgaa agcgaaaggt aagagcgccc tgatgttcaa
     2941 cctgcaagaa ccgtacttca cctggccgct gattgctgct gacgggggtt atgcgttcaa
     3001 gtatgaaaac ggcaagtacg acattaaaga cgtgggcgtg gataacgctg gcgcgaaagc
     3061 gggtctgacc ttcctggttg acctgattaa aaacaaacac atgaatgcag acaccgatta
     3121 ctccatcgca gaagctgcct ttaataaagg cgaaacagcg atgaccatca acggcccgtg
     3181 ggcatggtcc aacatcgaca ccagcaaagt gaattatggt gtaacggtac tgccgacctt
     3241 caagggtcaa ccatccaaac cgttcgttgg cgtgctgagc gcaggtatta acgccgccag
     3301 tccgaacaaa gagctggcaa aagagttcct cgaaaactat ctgctgactg atgaaggtct
     3361 ggaagcggtt aataaagaca aaccgctggg tgccgtagcg ctgaagtctt acgaggaaga
     3421 gttggcgaaa gatccacgta ttgccgccac gatggaaaac gcccagaaag gtgaaatcat
     3481 gccgaacatc ccgcagatgt ccgctttctg gtatgccgtg cgtactgcgg tgatcaacgc
     3541 cgccagcggt cgtcagactg tcgatgaagc ccttaaagac gcgcagactg gtaccggcag
     3601 cggcctggaa gttctgttcc aggggcccca tatgctcgag gcggagaacg gtgtgaaaat
     3661 cattccacgg cggtatcgca aagtcgagct gaagtacacg aagctgggca cccaggactt
     3721 tgactttgac cagcataatc aaacatgttt cgcggggctg gaggcaacgc taccgaactc
     3781 ctactgcaat gctatgctac agattttgta tttcaccgac gcgcttcgcg tgaagctgct
     3841 ggagcattcg tgcatcaagg agttttgcct gtcctgcgaa ctagggttcc tcttcaacat
     3901 gctggataaa agtaccgctt cttcaccttg ccaggccagc aatttcctgc gatctttccg
     3961 cactgtgcca gaggcctcgg cactgggatt gattctcacc gaccgctcat cgaacgtcaa
     4021 tctaatatcg ctgatacaga actggaaccg attcattttg catcaaatgc attacgaaat
     4081 attcgattct agcaagaacg catccaccta cagcggatct gtgcaaacat caacgaacgc
     4141 ggaaaacgcg ggctcttcag aaacaagtgg ctcctcggac ctttacgatt ccataagtga
     4201 tgagaactcc aaggaggacg atcgggaacg cagtaagatc aacgcagaaa ctgacatcag
     4261 taagatcttt gggaccaagc aaatctgtat aaaccgctgc atcaaatgcc aagaagagaa
     4321 gataaaggaa agcattctac ttgcctgcaa tttgtcgtat cccaaccaca tcaaagatag
     4381 tgatcagtat ttcaactttg gcaccatttt gaagcgatct ctcagctccg agaagagtat
     4441 tcaggccttc tgcgagagat gtaagaagtt ttcgccaacc aatcagagcg tgaaggtgac
     4501 ttcgcttccg caaattctgt ccattaactg tggcctcaac aacgaaaaag acattacctt
     4561 cctgaagcgc cagctcaatc gctgcagcga aaagacgact gttgatgcgg ccgcttcctt
     4621 gagcacaagc aagccgtgtc gatatggagc caactgttcg cgaagtgact gccatttcat
     4681 gcatccggat cgaaaatctc catcgcacac aagccaaccg aatgctgtca acaattctcc
     4741 caatggacgc caaaagtcct ggtttcccct tacatttact atgggcatca atgaccaagg
     4801 tgaggtgcag gtgcaaactc aatcagatgc aagcagtggc aaatcggaac aggaggagga
     4861 aacggaaaag ccaccaacaa agggcttgga caacaatcgg atgtacgcgc tgcatgccgt
     4921 ggtgtgccaa gtcgatgatg gtacccaaaa gaacttggta tcgttgataa atgtgcagcg
     4981 gccataccac accatgaaac tggctgaatc tgcagatgac cctcagagtc aatggtatat
     5041 ttttaatgat tttagcatat cgcccgtttc gccacaagaa tcggtatggt tcacattgga
     5101 ttggaaagtt ccttgcatac tcttctacag acacgtagag gatgactctg agtctgctag
     5161 tactactagc tcgaccgtca cggaaagtga agaaaccatt ccatcagaga gcagcagcgg
     5221 ctcgccaaca aatctatcca acccttttct agaggaaatt gtgagtccta tgctaggcaa
     5281 cttaagtgca gacgccacgc tgcagcccct gcagtcagat gaaatgccgc agtcgggtga
     5341 tctggtcgca atggatgccg agttcgttac cctaaatcca gaggaaaatg agattcgccc
     5401 ggatggcaaa acggcgacca ttaagccatg ccacatgagt gtggcccgga tttcatgtat
     5461 acgaggacaa ggcccggctg aaggagttcc attcatggac gattacatat ccacccagga
     5521 gaaggtcgtg gactacctaa ctcagttctc gggaatcaag cctggcgact tggacgctaa
     5581 cttcagcaaa aagcgactga ctgccttgaa gtactcatac cagaaattaa aatacctcgt
     5641 tgacgtagga gtaatatttg tcggacatgg tctgaagaac gactttaggg tcataaacat
     5701 ctatgtaccg tcggagcaga taatagatac ggtgcacctg tttcacatgc cacatcatcg
     5761 catggtttcc ctaagatttc tagcctggca tttcttgggt actaagattc agtccgagac
     5821 gcacgactcc atcgaagatg cacggaccac tctgcagctc tacaagcact atttgaagct
     5881 gcaggaggag aagaagtttg ccaacgctct caagaatctt tacgaacgcg gaaagcagct
     5941 gcagtggaag gttccagagg actgatctag agctagccct aggagatccg gctgctaaca
     6001 aagcccgaaa ggaagctgag ttggctgctg ccaccgctga gcaataacta gcataacccc
     6061 ttggggcctc taaacgggtc ttgaggggtt ttttgctgaa aggaggaact atatccggat
     6121 atcccgcaag aggcccggca gtaccggcat aaccaagcct atgcctacag catccagggt
     6181 gacggtgccg aggatgacga tgagcgcatt gttagatttc atacacggtg cctgactgcg
     6241 ttagcaattt aactgtgata aactaccgca ttaaagctta tcgatgataa gctgtcaaac
     6301 atgagaatta caacttatat cgtatggggc tgacttcagg tgctacattt gaagagataa
     6361 attgcactga aatcaagaaa tattttatct gattaataag atgatcttct tgagatcgtt
     6421 ttggtctgcg cgtaatctct tgctctgaaa acgaaaaaac cgccttgcag ggcggttttt
     6481 cgaaggttct ctgagctacc aactctttga accgaggtaa ctggcttgga ggagcgcagt
     6541 caccaaaact tgtcctttca gtttagcctt aaccggcgca tgacttcaag actaactcct
     6601 ctaaatcaat taccagtggc tgctgccagt ggtgcttttg catgtctttc cgggttggac
     6661 tcaagacgat agttaccgga taaggcgcag cggtcggact gaacgggggg ttcgtgcata
     6721 cagtccagct tggagcgaac tgcctacccg gaactgagtg tcaggcgtgg aatgagacaa
     6781 acgcggccat aacagcggaa tgacaccggt aaaccgaaag gcaggaacag gagagcgcac
     6841 gagggagccg ccagggggaa acgcctggta tctttatagt cctgtcgggt ttcgccacca
     6901 ctgatttgag cgtcagattt cgtgatgctt gtcagggggg cggagcctat ggaaaaacgg
     6961 ctttgccgcg gccctctcac ttccctgtta agtatcttcc tggcatcttc caggaaatct
     7021 ccgccccgtt cgtaagccat ttccgctcgc cgcagtcgaa cgaccgagcg tagcgagtca
     7081 gtgagcgagg aagcggaata tatcctgtat cacatattct gctgacgcac cggtgcagcc
     7141 ttttttctcc tgccacatga agcacttcac tgacaccctc atcagtgcca acatagtaag
     7201 ccagtataca ctcccctagc gctgatgtcc ggcggtgctt ttgccgttac gcaccacccc
     7261 gtcagtagct gaacaggagg gacagctgat agaaacagaa gccactggag cacctcaaaa
     7321 acaccatcat acactaaatc agtaagttgg cagcatcacc cgacgcactt tgcgccgaat
     7381 aaatacctgt gacggaagat cacttcgcag aataaataaa tcctggtgtc cctgttgata
     7441 ccgggaagcc ctgggccaac ttttggcgaa aatgagacgt tgatcggcac gtaagaggtt
     7501 ccaactttca ccataatgaa ataagatcac taccgggcgt attttttgag ttatcgagat
     7561 tttcaggagc taaggaagct aaaatggaga aaaaaatcac tggatatacc accgttgata
     7621 tatcccaatg gcatcgtaaa gaacattttg aggcatttca gtcagttgct caatgtacct
     7681 ataaccagac cgttcagctg gatattacgg cctttttaaa gaccgtaaag aaaaataagc
     7741 acaagtttta tccggccttt attcacattc ttgcccgcct gatgaatgct catccggaat
     7801 tc
//
