LOCUS       sequence-290554-        7400 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  Bacterial Expression of NcPAN2_457-1100.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 7400)
  AUTHORS   Jonas S, Christie M, Peter D, Bhandari D, Loh B, Huntzinger E, 
            Weichenrieder O, Izaurralde E
  TITLE     An asymmetric PAN3 dimer recruits a single PAN2 exonuclease to 
            mediate mRNA deadenylation and decay.
  JOURNAL   Nat Struct Mol Biol. 2014 Jul;21(7):599-608. doi: 10.1038/nsmb.2837.
            Epub 2014 Jun 1.
  PUBMED    24880343
REFERENCE   2  (bases 1 to 7400)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; doi: "10.1038/nsmb.2837";
            journalName: "Nat Struct Mol Biol"; date: "2014-07"; volume: "21"; 
            issue: "7"; pages: "599-608"
COMMENT     Sequence Label: pnYC-NpM-NcPAN2_457-1100_Y
FEATURES             Location/Qualifiers
     source          1..7400
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     primer_bind     2294..2313
                     /label=pBRrevBam
                     /note="pBR322 vectors, tet region, downstream of BamHI, 
                     reverse primer"
     primer_bind     2402..2421
                     /label=T7
                     /note="T7 promoter, forward primer"
     promoter        2402..2420
                     /label=T7 promoter
                     /note="promoter for bacteriophage T7 RNA polymerase"
     protein_bind    2421..2445
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     RBS             2460..2482
                     /note="efficient ribosome binding site from bacteriophage 
                     T7 gene 10 (Olins and Rangwala, 1989)"
     CDS             2489..3589
                     /codon_start=1
                     /gene="malE (mutated)"
                     /product="maltose binding protein from E. coli"
                     /label=MBP
                     /note="This version of the gene does not encode a signal 
                     sequence, so MBP will remain in the cytosol."
                     /translation="METEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLE
                     EKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKL
                     IAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIA
                     ADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGE
                     TAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFL
                     ENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAF
                     WYAVRTAVINAASGRQTVDEALKDAQT"
     CDS             3605..3628
                     /codon_start=1
                     /product="recognition and cleavage site for human 
                     rhinovirus 3C and PreScission proteases"
                     /label=HRV 3C site
                     /translation="LEVLFQGP"
     primer_bind     complement(5632..5650)
                     /label=T7 Term
                     /note="T7 terminator, reverse primer"
     terminator      5646..5693
                     /label=T7 terminator
                     /note="transcription terminator for bacteriophage T7 RNA 
                     polymerase"
     promoter        complement(join(5868..5873,5874..5890,5891..5896))
                     /label=tet promoter
                     /note="E. coli promoter for tetracycline efflux protein 
                     gene"
     rep_origin      6008..6553
                     /direction=RIGHT
                     /label=p15A ori
                     /note="Plasmids containing the medium-copy-number p15A 
                     origin of replication can be propagated in E. coli cells 
                     that contain a second plasmid with the ColE1 origin.
                     "
     primer_bind     6454..6473
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     primer_bind     6670..6687
                     /label=L4440
                     /note="L4440 vector, forward primer"
     promoter        7079..7181
                     /label=cat promoter
                     /note="promoter of the E. coli cat gene encoding 
                     chloramphenicol acetyltransferase"
     CDS             join(7182..7400,1..441)
                     /codon_start=1
                     /gene="cat"
                     /product="chloramphenicol acetyltransferase"
                     /label=CmR
                     /note="confers resistance to chloramphenicol"
                     /translation="MEKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFL
                     KTVKKNKHKFYPAFIHILARLMNAHPEFGMAMKDGELVIWDSVHPCYTVFHEQTETFSS
                     LWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANM
                     DNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQGGA"
     primer_bind     complement(7248..7267)
                     /label=CAT-R
                     /note="Chloramphenicol resistance gene, reverse primer"
ORIGIN
        1 ggtatggcaa tgaaagacgg tgagctggtg atatgggata gtgttcaccc ttgttacacc
       61 gttttccatg agcaaactga aacgttttca tcgctctgga gtgaatacca cgacgatttc
      121 cggcagtttc tacacatata ttcgcaagat gtggcgtgtt acggtgaaaa cctggcctat
      181 ttccctaaag ggtttattga gaatatgttt ttcgtctcag ccaatccctg ggtgagtttc
      241 accagttttg atttaaacgt ggccaatatg gacaacttct tcgcccccgt tttcaccatg
      301 ggcaaatatt atacgcaagg cgacaaggtg ctgatgccgc tggcgattca ggttcatcat
      361 gccgtctgtg atggcttcca tgtcggcaga atgcttaatg aattacaaca gtactgcgat
      421 gagtggcagg gcggggcgta atttttttaa ggcagttatt ggtgccctta aacgcctggt
      481 gctacgcctg aataagtgat aataagcgga tgaatggcag aaattcgaaa gcaaattcga
      541 cccggtcgtc ggttcagggc agggtcgtta aatagccgct tatgtctatt gctggtttac
      601 cggtttattg actaccggaa gcagtgtgac cgtgtgcttc tcaaatgcct gaggccagtt
      661 tgctcaggct ctccccgtgg aggtaataat tgacgatatg atcatttatt ctgcctccca
      721 gagcctgata aaaacggtta gcgcttcgtt aatacagatg taggtgttcc acagggtagc
      781 cagcagcatc ctgcgatgca gatccggaac ataatggtgc agggcgcttg tttcggcgtg
      841 ggtatggtgg caggccccgt ggccggggga ctgttgggcg ctgccggcac ctgtcctacg
      901 agttgcatga taaagaagac agtcataagt gcggcgacga tagtcatgcc ccgcgcccac
      961 cggaaggagc taccggacag cggtgcggac tgttgtaact cagaataaga aatgaggccg
     1021 ctcatggcgt tgactctcag tcatagtatc gtggtatcac cggttggttc cactctctgt
     1081 tgcgggcaac ttcagcagca cgtaggggac ttccgcgttt ccagacttta cgaaacacgg
     1141 aaaccgaaga ccattcatgt tgttgctcag gtcgcagacg ttttgcagca gcagtcgctt
     1201 cacgttcgct cgcgtatcgg tgattcattc tgctaaccag taaggcaacc ccgccagcct
     1261 agccgggtcc tcaacgacag gagcacgatc atgcgcaccc gtggccagga cccaacgctg
     1321 cccgagatgc gccgcgtgcg gctgctggag atggcggacg cgatggatat gttctgccaa
     1381 gggttggttt gcgcattcac agttctccgc aagaattgat tggctccaat tcttggagtg
     1441 gtgaatccgt tagcgaggtg ccgccggctt ccattcaggt cgaggtggcc cggctccatg
     1501 caccgcgacg caacgcgggg aggcagacaa ggtatagggc ggcgcctaca atccatgcca
     1561 acccgttcca tgtgctcgcc gaggcggcat aaatcgccgt gacgatcagc ggtccagtga
     1621 tcgaagttag gctggtaaga gccgcgagcg atccttgaag ctgtccctga tggtcgtcat
     1681 ctacctgcct ggacagcatg gcctgcaacg cgggcatccc gatgccgccg gaagcgagaa
     1741 gaatcataat ggggaaggcc atccagcctc gcgtcgcgaa cgccagcaag acgtagccca
     1801 gcgcgtcggc cgccatgccg gcgataatgg cctgcttctc gccgaaacgt ttggtggcgg
     1861 gaccagtgac gaaggcttga gcgagggcgt gcaagattcc gaataccgca agcgacaggc
     1921 cgatcatcgt cgcgctccag cgaaagcggt cctcgccgaa aatgacccag agcgctgccg
     1981 gcacctgtcc tacgagttgc atgataaaga agacagtcat aagtgcggcg acgatagtca
     2041 tgccccgcgc ccaccggaag gagctgactg ggttgaaggc tctcaagggc atcggtcgac
     2101 gctctccctt atgcgactcc tgcattagga agcagcccag tagtaggttg aggccgttga
     2161 gcaccgccgc cgcaaggaat ggtgcatgca aggagatggc gcccaacagt cccccggcca
     2221 cggggcctgc caccataccc acgccgaaac aagcgctcat gagcccgaag tggcgagccc
     2281 gatcttcccc atcggtgatg tcggcgatat aggcgccagc aaccgcacct gtggcgccgg
     2341 tgatgccggc cacgatgcgt ccggcgtaga ggatcagact aagatctcga tcccgcgaaa
     2401 ttaatacgac tcactatagg ggaattgtga gcggataaca attccccact agtaataatt
     2461 ttgtttaact ttaagaagga gatataccat ggaaactgaa gaaggtaaac tggtaatctg
     2521 gattaacggc gataaaggct ataacggtct cgctgaagtc ggtaagaaat tcgagaaaga
     2581 taccggaatt aaagtcaccg ttgagcatcc ggataaactg gaagagaaat tcccacaggt
     2641 tgcggcaact ggcgatggcc ctgacattat cttctgggca cacgaccgct ttggtggcta
     2701 cgctcaatct ggcctgttgg ctgaaatcac cccggacaaa gcgttccagg acaagctgta
     2761 tccgtttacc tgggatgccg tacgttacaa cggcaagctg attgcttacc cgatcgctgt
     2821 tgaagcgtta tcgctgattt ataacaaaga cctgctgccg aacccgccaa aaacctggga
     2881 agagatcccg gcgctggata aagaactgaa agcgaaaggt aagagcgccc tgatgttcaa
     2941 cctgcaagaa ccgtacttca cctggccgct gattgctgct gacgggggtt atgcgttcaa
     3001 gtatgaaaac ggcaagtacg acattaaaga cgtgggcgtg gataacgctg gcgcgaaagc
     3061 gggtctgacc ttcctggttg acctgattaa aaacaaacac atgaatgcag acaccgatta
     3121 ctccatcgca gaagctgcct ttaataaagg cgaaacagcg atgaccatca acggcccgtg
     3181 ggcatggtcc aacatcgaca ccagcaaagt gaattatggt gtaacggtac tgccgacctt
     3241 caagggtcaa ccatccaaac cgttcgttgg cgtgctgagc gcaggtatta acgccgccag
     3301 tccgaacaaa gagctggcaa aagagttcct cgaaaactat ctgctgactg atgaaggtct
     3361 ggaagcggtt aataaagaca aaccgctggg tgccgtagcg ctgaagtctt acgaggaaga
     3421 gttggcgaaa gatccacgta ttgccgccac gatggaaaac gcccagaaag gtgaaatcat
     3481 gccgaacatc ccgcagatgt ccgctttctg gtatgccgtg cgtactgcgg tgatcaacgc
     3541 cgccagcggt cgtcagactg tcgatgaagc ccttaaagac gcgcagactg gtaccggcag
     3601 cggcctggaa gttctgttcc aggggcccca tatgcactgg agtctgaggc cggaggcgcc
     3661 gcctgaatat aggatatgtg agattaagta tagcaagttc ggtgtggatg actttgactt
     3721 tggtttcttc aacaacaccc cataccctgg cttggagaat aacataacaa actcctatgc
     3781 caactcccta ctgcaggtca tgcactacac ccccctgttg cgaaacatgg cccttcagca
     3841 cgctgctacg gcctgtctag ctgatccgtg tctgctgtgc gagctgggtt atgtttttga
     3901 catgctgcag aaaggtgaag ggccttcttg ccatgctact aacatgctca gggctcttaa
     3961 tcatactagt aacgcttccg ttagtggtgt cctcgaggat atcgccaaag acaagaaccc
     4021 aagcactctg gtcaagaacc tcaccatgtt ccttttcgac aagatcagtc aggactacaa
     4081 gggcactcct ccgatttcta ccgaactcga aaggactctg tttaagctga accagcctcc
     4141 gaaccctctt gatctagtca agagacttct agagaccgac gcaaggtatc agatcaagtg
     4201 tatgcactgt caacatgtca gcccaaggac tgcaacgaca ttcgtcaaca agctctgcta
     4261 cccagcagcg aagccaaaca ttcgcggtat gaaggcacaa cgcatcactt tctcgcaagt
     4321 gctcaaggct ggactcgaga acgaggctgt aaacaagggg tattgtacca agtgtcagcg
     4381 ctaccagaac cttgaccagc gcaagatcat cttcaacatc ccggctgttt tggcgctctg
     4441 cacagagatc accactgccg agcaccgcaa gttgtggtct acccctggat ggctgccgga
     4501 ggaaattggt atcatagttg accaaggcca tgtttattgc tatgaagggg acgacctcaa
     4561 gttgcatctc aacaggggga tacataatat cacagtgtac tcgttggtgg gtacggtggt
     4621 taacgttgag accaagtcac cgcagaagag tcatttggtg gctactgtta atgttgggcg
     4681 tgcggagcca gagagcaaag accaggatcg ctggcatttg ttcaacgact tctcggtacg
     4741 gggcatttcc aaggttgagg cacttacctt taacgctgct tggaagatgc ctgtcgtcgt
     4801 catgttccag gtcaaggcgg ccaaccatcg cttcaacatg gactggaaga cacgtctgga
     4861 cacctccgtc ctcttcagag ataacaaccc acatgccctc aagacgtacg agctactcga
     4921 ccgagagaca gagattcccg gtccagacac tgtcatcgca attgatacgg aatttattcg
     4981 acttaaggag agagagatcc atatcgacga agacgggaaa tccaaaacca ttcgacccat
     5041 ctcgcacgct atcgcgcgtg cctcggtcgt ccgcggccaa ggctccagag aaggcgttgc
     5101 cttcatcgat gattacatcc acatcaagga aaccattgtt gactatctca ccgagtggtc
     5161 cggtattaca cccaccgatt tggatcccat taactcccag cgtaacctcg tctcgcccaa
     5221 aaccgcctac aaaaaactct gggtcctcgt taacctgggt tgcaagttcc tcggccacgg
     5281 cctcagccaa gatttccgcg tcatcaatat ccaagtgcct agaaatcagg tcattgatac
     5341 gtctatcatc tttatgaagc cgccttctca gcgcaagatt tcgctcgctt tcttggcttg
     5401 gtatctgctc aaggaagaca tccagcaaaa tacccacgac tctatcgaag acgcccagac
     5461 ggcgctgaag ctgtaccgaa agtacgaaga gtttatggct aacgggagct tccacgatgt
     5521 cttggaggcg ctttacaaaa agggcaaaac actcaacttc aagccgtgag ctagccctag
     5581 gagatccggc tgctaacaaa gcccgaaagg aagctgagtt ggctgctgcc accgctgagc
     5641 aataactagc ataacccctt ggggcctcta aacgggtctt gaggggtttt ttgctgaaag
     5701 gaggaactat atccggatat cccgcaagag gcccggcagt accggcataa ccaagcctat
     5761 gcctacagca tccagggtga cggtgccgag gatgacgatg agcgcattgt tagatttcat
     5821 acacggtgcc tgactgcgtt agcaatttaa ctgtgataaa ctaccgcatt aaagcttatc
     5881 gatgataagc tgtcaaacat gagaattaca acttatatcg tatggggctg acttcaggtg
     5941 ctacatttga agagataaat tgcactgaaa tcaagaaata ttttatctga ttaataagat
     6001 gatcttcttg agatcgtttt ggtctgcgcg taatctcttg ctctgaaaac gaaaaaaccg
     6061 ccttgcaggg cggtttttcg aaggttctct gagctaccaa ctctttgaac cgaggtaact
     6121 ggcttggagg agcgcagtca ccaaaacttg tcctttcagt ttagccttaa ccggcgcatg
     6181 acttcaagac taactcctct aaatcaatta ccagtggctg ctgccagtgg tgcttttgca
     6241 tgtctttccg ggttggactc aagacgatag ttaccggata aggcgcagcg gtcggactga
     6301 acggggggtt cgtgcataca gtccagcttg gagcgaactg cctacccgga actgagtgtc
     6361 aggcgtggaa tgagacaaac gcggccataa cagcggaatg acaccggtaa accgaaaggc
     6421 aggaacagga gagcgcacga gggagccgcc agggggaaac gcctggtatc tttatagtcc
     6481 tgtcgggttt cgccaccact gatttgagcg tcagatttcg tgatgcttgt caggggggcg
     6541 gagcctatgg aaaaacggct ttgccgcggc cctctcactt ccctgttaag tatcttcctg
     6601 gcatcttcca ggaaatctcc gccccgttcg taagccattt ccgctcgccg cagtcgaacg
     6661 accgagcgta gcgagtcagt gagcgaggaa gcggaatata tcctgtatca catattctgc
     6721 tgacgcaccg gtgcagcctt ttttctcctg ccacatgaag cacttcactg acaccctcat
     6781 cagtgccaac atagtaagcc agtatacact cccctagcgc tgatgtccgg cggtgctttt
     6841 gccgttacgc accaccccgt cagtagctga acaggaggga cagctgatag aaacagaagc
     6901 cactggagca cctcaaaaac accatcatac actaaatcag taagttggca gcatcacccg
     6961 acgcactttg cgccgaataa atacctgtga cggaagatca cttcgcagaa taaataaatc
     7021 ctggtgtccc tgttgatacc gggaagccct gggccaactt ttggcgaaaa tgagacgttg
     7081 atcggcacgt aagaggttcc aactttcacc ataatgaaat aagatcacta ccgggcgtat
     7141 tttttgagtt atcgagattt tcaggagcta aggaagctaa aatggagaaa aaaatcactg
     7201 gatataccac cgttgatata tcccaatggc atcgtaaaga acattttgag gcatttcagt
     7261 cagttgctca atgtacctat aaccagaccg ttcagctgga tattacggcc tttttaaaga
     7321 ccgtaaagaa aaataagcac aagttttatc cggcctttat tcacattctt gcccgcctga
     7381 tgaatgctca tccggaattc
//
