LOCUS       sequence-291282-        6719 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  Bacterial Expression of DmBam-del13-36.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 6719)
  AUTHORS   Sgromo A, Raisch T, Backhaus C, Keskeny C, Alva V, Weichenrieder O, 
            Izaurralde E
  TITLE     Drosophila Bag-of-marbles directly interacts with the CAF40 subunit 
            of the CCR4-NOT complex to elicit repression of mRNA targets.
  JOURNAL   RNA. 2018 Mar;24(3):381-395. doi: 10.1261/rna.064584.117. Epub 2017 
            Dec 18.
  PUBMED    29255063
REFERENCE   2  (bases 1 to 6719)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; doi: 
            "10.1261/rna.064584.117"; journalName: "RNA"; date: "2018-03"; 
            volume: "24"; issue: "3"; pages: "381-395"
COMMENT     Sequence Label: pnYC-NvM-DmBam-del13-36_AG
FEATURES             Location/Qualifiers
     source          1..6719
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     primer_bind     2294..2313
                     /label=pBRrevBam
                     /note="pBR322 vectors, tet region, downstream of BamHI, 
                     reverse primer"
     primer_bind     2402..2421
                     /label=T7
                     /note="T7 promoter, forward primer"
     promoter        2402..2420
                     /label=T7 promoter
                     /note="promoter for bacteriophage T7 RNA polymerase"
     protein_bind    2421..2445
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     RBS             2460..2482
                     /note="efficient ribosome binding site from bacteriophage 
                     T7 gene 10 (Olins and Rangwala, 1989)"
     CDS             2489..3589
                     /codon_start=1
                     /gene="malE (mutated)"
                     /product="maltose binding protein from E. coli"
                     /label=MBP
                     /note="This version of the gene does not encode a signal 
                     sequence, so MBP will remain in the cytosol."
                     /translation="METEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLE
                     EKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKL
                     IAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIA
                     ADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGE
                     TAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFL
                     ENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAF
                     WYAVRTAVINAASGRQTVDEALKDAQT"
     CDS             3605..3625
                     /codon_start=1
                     /product="tobacco etch virus (TEV) protease recognition and
                     cleavage site"
                     /label=TEV site
                     /translation="ENLYFQG"
     primer_bind     complement(4951..4969)
                     /label=T7 Term
                     /note="T7 terminator, reverse primer"
     terminator      4965..5012
                     /label=T7 terminator
                     /note="transcription terminator for bacteriophage T7 RNA 
                     polymerase"
     promoter        complement(join(5187..5192,5193..5209,5210..5215))
                     /label=tet promoter
                     /note="E. coli promoter for tetracycline efflux protein 
                     gene"
     rep_origin      5327..5872
                     /direction=RIGHT
                     /label=p15A ori
                     /note="Plasmids containing the medium-copy-number p15A 
                     origin of replication can be propagated in E. coli cells 
                     that contain a second plasmid with the ColE1 origin.
                     "
     primer_bind     5773..5792
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     primer_bind     5989..6006
                     /label=L4440
                     /note="L4440 vector, forward primer"
     promoter        6398..6500
                     /label=cat promoter
                     /note="promoter of the E. coli cat gene encoding 
                     chloramphenicol acetyltransferase"
     CDS             join(6501..6719,1..441)
                     /codon_start=1
                     /gene="cat"
                     /product="chloramphenicol acetyltransferase"
                     /label=CmR
                     /note="confers resistance to chloramphenicol"
                     /translation="MEKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFL
                     KTVKKNKHKFYPAFIHILARLMNAHPEFGMAMKDGELVIWDSVHPCYTVFHEQTETFSS
                     LWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANM
                     DNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQGGA"
     primer_bind     complement(6567..6586)
                     /label=CAT-R
                     /note="Chloramphenicol resistance gene, reverse primer"
ORIGIN
        1 ggtatggcaa tgaaagacgg tgagctggtg atatgggata gtgttcaccc ttgttacacc
       61 gttttccatg agcaaactga aacgttttca tcgctctgga gtgaatacca cgacgatttc
      121 cggcagtttc tacacatata ttcgcaagat gtggcgtgtt acggtgaaaa cctggcctat
      181 ttccctaaag ggtttattga gaatatgttt ttcgtctcag ccaatccctg ggtgagtttc
      241 accagttttg atttaaacgt ggccaatatg gacaacttct tcgcccccgt tttcaccatg
      301 ggcaaatatt atacgcaagg cgacaaggtg ctgatgccgc tggcgattca ggttcatcat
      361 gccgtctgtg atggcttcca tgtcggcaga atgcttaatg aattacaaca gtactgcgat
      421 gagtggcagg gcggggcgta atttttttaa ggcagttatt ggtgccctta aacgcctggt
      481 gctacgcctg aataagtgat aataagcgga tgaatggcag aaattcgaaa gcaaattcga
      541 cccggtcgtc ggttcagggc agggtcgtta aatagccgct tatgtctatt gctggtttac
      601 cggtttattg actaccggaa gcagtgtgac cgtgtgcttc tcaaatgcct gaggccagtt
      661 tgctcaggct ctccccgtgg aggtaataat tgacgatatg atcatttatt ctgcctccca
      721 gagcctgata aaaacggtta gcgcttcgtt aatacagatg taggtgttcc acagggtagc
      781 cagcagcatc ctgcgatgca gatccggaac ataatggtgc agggcgcttg tttcggcgtg
      841 ggtatggtgg caggccccgt ggccggggga ctgttgggcg ctgccggcac ctgtcctacg
      901 agttgcatga taaagaagac agtcataagt gcggcgacga tagtcatgcc ccgcgcccac
      961 cggaaggagc taccggacag cggtgcggac tgttgtaact cagaataaga aatgaggccg
     1021 ctcatggcgt tgactctcag tcatagtatc gtggtatcac cggttggttc cactctctgt
     1081 tgcgggcaac ttcagcagca cgtaggggac ttccgcgttt ccagacttta cgaaacacgg
     1141 aaaccgaaga ccattcatgt tgttgctcag gtcgcagacg ttttgcagca gcagtcgctt
     1201 cacgttcgct cgcgtatcgg tgattcattc tgctaaccag taaggcaacc ccgccagcct
     1261 agccgggtcc tcaacgacag gagcacgatc atgcgcaccc gtggccagga cccaacgctg
     1321 cccgagatgc gccgcgtgcg gctgctggag atggcggacg cgatggatat gttctgccaa
     1381 gggttggttt gcgcattcac agttctccgc aagaattgat tggctccaat tcttggagtg
     1441 gtgaatccgt tagcgaggtg ccgccggctt ccattcaggt cgaggtggcc cggctccatg
     1501 caccgcgacg caacgcgggg aggcagacaa ggtatagggc ggcgcctaca atccatgcca
     1561 acccgttcca tgtgctcgcc gaggcggcat aaatcgccgt gacgatcagc ggtccagtga
     1621 tcgaagttag gctggtaaga gccgcgagcg atccttgaag ctgtccctga tggtcgtcat
     1681 ctacctgcct ggacagcatg gcctgcaacg cgggcatccc gatgccgccg gaagcgagaa
     1741 gaatcataat ggggaaggcc atccagcctc gcgtcgcgaa cgccagcaag acgtagccca
     1801 gcgcgtcggc cgccatgccg gcgataatgg cctgcttctc gccgaaacgt ttggtggcgg
     1861 gaccagtgac gaaggcttga gcgagggcgt gcaagattcc gaataccgca agcgacaggc
     1921 cgatcatcgt cgcgctccag cgaaagcggt cctcgccgaa aatgacccag agcgctgccg
     1981 gcacctgtcc tacgagttgc atgataaaga agacagtcat aagtgcggcg acgatagtca
     2041 tgccccgcgc ccaccggaag gagctgactg ggttgaaggc tctcaagggc atcggtcgac
     2101 gctctccctt atgcgactcc tgcattagga agcagcccag tagtaggttg aggccgttga
     2161 gcaccgccgc cgcaaggaat ggtgcatgca aggagatggc gcccaacagt cccccggcca
     2221 cggggcctgc caccataccc acgccgaaac aagcgctcat gagcccgaag tggcgagccc
     2281 gatcttcccc atcggtgatg tcggcgatat aggcgccagc aaccgcacct gtggcgccgg
     2341 tgatgccggc cacgatgcgt ccggcgtaga ggatcagact aagatctcga tcccgcgaaa
     2401 ttaatacgac tcactatagg ggaattgtga gcggataaca attccccact agtaataatt
     2461 ttgtttaact ttaagaagga gatataccat ggaaactgaa gaaggtaaac tggtaatctg
     2521 gattaacggc gataaaggct ataacggtct cgctgaagtc ggtaagaaat tcgagaaaga
     2581 taccggaatt aaagtcaccg ttgagcatcc ggataaactg gaagagaaat tcccacaggt
     2641 tgcggcaact ggcgatggcc ctgacattat cttctgggca cacgaccgct ttggtggcta
     2701 cgctcaatct ggcctgttgg ctgaaatcac cccggacaaa gcgttccagg acaagctgta
     2761 tccgtttacc tgggatgccg tacgttacaa cggcaagctg attgcttacc cgatcgctgt
     2821 tgaagcgtta tcgctgattt ataacaaaga cctgctgccg aacccgccaa aaacctggga
     2881 agagatcccg gcgctggata aagaactgaa agcgaaaggt aagagcgccc tgatgttcaa
     2941 cctgcaagaa ccgtacttca cctggccgct gattgctgct gacgggggtt atgcgttcaa
     3001 gtatgaaaac ggcaagtacg acattaaaga cgtgggcgtg gataacgctg gcgcgaaagc
     3061 gggtctgacc ttcctggttg acctgattaa aaacaaacac atgaatgcag acaccgatta
     3121 ctccatcgca gaagctgcct ttaataaagg cgaaacagcg atgaccatca acggcccgtg
     3181 ggcatggtcc aacatcgaca ccagcaaagt gaattatggt gtaacggtac tgccgacctt
     3241 caagggtcaa ccatccaaac cgttcgttgg cgtgctgagc gcaggtatta acgccgccag
     3301 tccgaacaaa gagctggcaa aagagttcct cgaaaactat ctgctgactg atgaaggtct
     3361 ggaagcggtt aataaagaca aaccgctggg tgccgtagcg ctgaagtctt acgaggaaga
     3421 gttggcgaaa gatccacgta ttgccgccac gatggaaaac gcccagaaag gtgaaatcat
     3481 gccgaacatc ccgcagatgt ccgctttctg gtatgccgtg cgtactgcgg tgatcaacgc
     3541 cgccagcggt cgtcagactg tcgatgaagc ccttaaagac gcgcagactg gtaccggcag
     3601 cggcgaaaac ctttacttcc agggccatat gctcgagatg cttaatgcac gtgacgtgtg
     3661 tcctgagggc aacaacgaag atccgaggaa agccacttgt gagtacgagg atacgaacga
     3721 agatggtgca acctgcacat cgggcgtttt atccgaaatc caggagaact tcggtagact
     3781 ccggttgtgt gacgttactg caccactcct cgaattccac ggtttggatt gcttgcaaca
     3841 gattcaaaag cgctcgcgcc attttgcatt cgacggttct ccggccaaga agtcgcgatc
     3901 cggaggcgtg ttggtcaccg ggccaaagca gaagcaactg cagaaggaaa atgtgtggaa
     3961 ccggaagagt aaaggctctg cgtccgcgga taatattgag aaactgccca taactattga
     4021 gaaactgcat atgattggtc tgcacggcga ttgcttagag cacaacgccg tgctgcgttt
     4081 gatgaatctg ttcagatccc tgcatgatca cctgaccgcc gatttgggct tctcgcgcca
     4141 aaactcaatg ccctcggact atctgttcga tatgccggtg aagagcacga tgcctaagag
     4201 cttgaatgtg cgctaccaac tgcaggtgct gtgcaccaaa gtagagcgct tccttgtcca
     4261 gcagcgccgc accttggagt cgaatcgcca cttcgatttc gagaaatacg acgagtgtga
     4321 caagttgctt aagggtttcg catcctattt ggacaacttc aaactgcttt taaagcccaa
     4381 aatgcgcaat cgaaacggaa actcggggag caatgcggac aagttccata ctcagcgcat
     4441 ggagagattg ctaattggtc tgcgcgattg gatcaaggct gcgcatctca gtgtgcacgt
     4501 atttaactgg gaaatggatc tggagcaccg ctactccggg gccatgaccg aaagccacaa
     4561 gtcgttgaac gagcgggcca tccttttgtc cggtgccgag ctaagggcgg ccgaagcgcg
     4621 tggaatcagt gcggaggatc tgttcatcgc ccagagatac aaactgggag gtccgatcta
     4681 ttgcgttctg gagcagcatg agttcctctc cgctctgatc gccaatccag agacctattt
     4741 cccgcccagt gttgtcgcca tttgcgggcc acagaagctt ggcgcagtga gcatggagca
     4801 gccgtcagcg tcggaggagg agtttgagga gaccgaggaa gtgccatcat cgccacctcg
     4861 tcacaccgga cgtgtacctc gcttcagaag ctaacctagg agatccggct gctaacaaag
     4921 cccgaaagga agctgagttg gctgctgcca ccgctgagca ataactagca taaccccttg
     4981 gggcctctaa acgggtcttg aggggttttt tgctgaaagg aggaactata tccggatatc
     5041 ccgcaagagg cccggcagta ccggcataac caagcctatg cctacagcat ccagggtgac
     5101 ggtgccgagg atgacgatga gcgcattgtt agatttcata cacggtgcct gactgcgtta
     5161 gcaatttaac tgtgataaac taccgcatta aagcttatcg atgataagct gtcaaacatg
     5221 agaattacaa cttatatcgt atggggctga cttcaggtgc tacatttgaa gagataaatt
     5281 gcactgaaat caagaaatat tttatctgat taataagatg atcttcttga gatcgttttg
     5341 gtctgcgcgt aatctcttgc tctgaaaacg aaaaaaccgc cttgcagggc ggtttttcga
     5401 aggttctctg agctaccaac tctttgaacc gaggtaactg gcttggagga gcgcagtcac
     5461 caaaacttgt cctttcagtt tagccttaac cggcgcatga cttcaagact aactcctcta
     5521 aatcaattac cagtggctgc tgccagtggt gcttttgcat gtctttccgg gttggactca
     5581 agacgatagt taccggataa ggcgcagcgg tcggactgaa cggggggttc gtgcatacag
     5641 tccagcttgg agcgaactgc ctacccggaa ctgagtgtca ggcgtggaat gagacaaacg
     5701 cggccataac agcggaatga caccggtaaa ccgaaaggca ggaacaggag agcgcacgag
     5761 ggagccgcca gggggaaacg cctggtatct ttatagtcct gtcgggtttc gccaccactg
     5821 atttgagcgt cagatttcgt gatgcttgtc aggggggcgg agcctatgga aaaacggctt
     5881 tgccgcggcc ctctcacttc cctgttaagt atcttcctgg catcttccag gaaatctccg
     5941 ccccgttcgt aagccatttc cgctcgccgc agtcgaacga ccgagcgtag cgagtcagtg
     6001 agcgaggaag cggaatatat cctgtatcac atattctgct gacgcaccgg tgcagccttt
     6061 tttctcctgc cacatgaagc acttcactga caccctcatc agtgccaaca tagtaagcca
     6121 gtatacactc ccctagcgct gatgtccggc ggtgcttttg ccgttacgca ccaccccgtc
     6181 agtagctgaa caggagggac agctgataga aacagaagcc actggagcac ctcaaaaaca
     6241 ccatcataca ctaaatcagt aagttggcag catcacccga cgcactttgc gccgaataaa
     6301 tacctgtgac ggaagatcac ttcgcagaat aaataaatcc tggtgtccct gttgataccg
     6361 ggaagccctg ggccaacttt tggcgaaaat gagacgttga tcggcacgta agaggttcca
     6421 actttcacca taatgaaata agatcactac cgggcgtatt ttttgagtta tcgagatttt
     6481 caggagctaa ggaagctaaa atggagaaaa aaatcactgg atataccacc gttgatatat
     6541 cccaatggca tcgtaaagaa cattttgagg catttcagtc agttgctcaa tgtacctata
     6601 accagaccgt tcagctggat attacggcct ttttaaagac cgtaaagaaa aataagcaca
     6661 agttttatcc ggcctttatt cacattcttg cccgcctgat gaatgctcat ccggaattc
//
