LOCUS       sequence-303075-        8536 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  Mammalian expression of cell-surface protein partial extracellular 
            domain fused to Fc(DAPA)-Avi-6xHis. Protein is secreted from cells..
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 8536)
  AUTHORS   Wojtowicz WM, Vielmetter J, Fernandes RA, Siepe DH, Eastman CL, 
            Chisholm GB, Cox S, Klock H, Anderson PW, Rue SM, Miller JJ, Glaser 
            SM, Bragstad ML, Vance J, Lam AW, Lesley SA, Zinn K, Garcia KC
  TITLE     A Human IgSF Cell-Surface Interactome Reveals a Complex Network of 
            Protein-Protein Interactions.
  JOURNAL   Cell. 2020 Aug 20;182(4):1027-1043.e17. doi: 
            10.1016/j.cell.2020.07.025.
  PUBMED    32822567
REFERENCE   2  (bases 1 to 8536)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; doi: 
            "10.1016/j.cell.2020.07"; journalName: "Cell"; date: "2020-08-20- 
            20"; volume: "182"; issue: "4"; pages: "1027-1043.e17"
COMMENT     Sequence Label: pD649-HAsp-NOTCH1(Trunc2)-Fc(DAPA)-AviTag-6xHis
FEATURES             Location/Qualifiers
     source          1..8536
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     primer_bind     124..143
                     /label=Kan-R
                     /note="Kanamycin resistance gene, reverse primer"
     primer_bind     149..168
                     /label=pENTR-R
                     /note="pENTR vectors, reverse primer"
     rep_origin      254..842
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     743..762
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     primer_bind     996..1013
                     /label=L4440
                     /note="L4440 vector, forward primer"
     primer_bind     1111..1128
                     /label=M13 Forward
                     /note="In lacZ gene. Also called M13-F20 or M13 (-21) 
                     Forward"
     primer_bind     1112..1128
                     /label=M13 fwd
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     protein_bind    1584..1600
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     enhancer        1767..2146
                     /label=CMV enhancer
                     /note="human cytomegalovirus immediate early enhancer"
     promoter        2147..2350
                     /label=CMV promoter
                     /note="human cytomegalovirus (CMV) immediate early 
                     promoter"
     primer_bind     2301..2321
                     /label=CMV-F
                     /note="Human CMV immediate early promoter, forward primer"
     primer_bind     2347..2371
                     /label=LNCX
                     /note="Human CMV promoter, forward primer"
     promoter        2581..2599
                     /label=SP6 promoter
                     /note="promoter for bacteriophage SP6 RNA polymerase"
     primer_bind     2581..2598
                     /label=SP6
                     /note="SP6 promoter, forward primer"
     primer_bind     2612..2631
                     /label=pMT2-F
                     /note="Synthetic intron, forward primer"
     CDS             5878..5922
                     /codon_start=1
                     /product="peptide tag that allows for enzymatic 
                     biotinylation"
                     /label=AviTag(TM)
                     /translation="GLNDIFEAQKIEWHE"
     CDS             5923..5940
                     /codon_start=1
                     /product="6xHis affinity tag"
                     /label=6xHis
                     /translation="HHHHHH"
     primer_bind     complement(6080..6097)
                     /label=BGH-rev
                     /note="Bovine growth hormone terminator, reverse primer. 
                     Also called BGH reverse"
     polyA_signal    6086..6197
                     /label=bGH poly(A) signal
                     /note="bovine growth hormone polyadenylation signal"
     primer_bind     complement(6315..6335)
                     /label=pBABE 3'
                     /note="SV40 enhancer, reverse primer for pBABE vectors"
     promoter        6320..6649
                     /label=SV40 promoter
                     /note="SV40 enhancer and early promoter"
     rep_origin      6500..6635
                     /label=SV40 ori
                     /note="SV40 origin of replication"
     primer_bind     6562..6581
                     /label=SV40pro-F
                     /note="SV40 promoter/origin, forward primer"
     promoter        6697..6744
                     /label=EM7 promoter
                     /note="synthetic bacterial promoter "
     CDS             6763..7362
                     /codon_start=1
                     /gene="pac from Streptomyces alboniger"
                     /product="puromycin N-acetyltransferase"
                     /label=PuroR
                     /note="confers resistance to puromycin"
                     /translation="MTEYKPTVRLATRDDVPRAVRTLAAAFADYPATRHTVDPDRHIER
                     VTELQELFLTRVGLDIGKVWVADDGAAVAVWTTPESVEAGAVFAEIGPRMAELSGSRLA
                     AQQQMEGLLAPHRPKEPAWFLATVGVSPDHQGKGLGSAVVLPGVEAAERAGVPAFLETS
                     APRNLPFYERLGFTVTADVEVPEGPRTWCMTRKPGA"
     primer_bind     complement(6763..6782)
                     /label=Puro-R
                     /note="Puromycin resistance gene, reverse primer. Also 
                     called puro-variant-R"
     primer_bind     7259..7279
                     /label=Puro-F
                     /note="Puromycin resistance gene, forward primer"
     polyA_signal    7492..7613
                     /label=SV40 poly(A) signal
                     /note="SV40 polyadenylation signal"
     primer_bind     complement(7529..7548)
                     /label=SV40pA-R
                     /note="SV40 polyA, reverse primer"
     primer_bind     7583..7602
                     /label=EBV-rev
                     /note="SV40 polyA terminator, reverse primer"
     CDS             complement(join(7666..8457,8458..8526))
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     8289..8308
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
     promoter        complement(join(8527..8536,1..82))
                     /gene="bla"
                     /label=AmpR promoter
ORIGIN
        1 tttcaatatt attgaagcat ttatcagggt tattgtctca tgagcggata catatttgaa
       61 tgtatttaga aaaataaaca aataggggtc agtgttacaa ccaattaacc aattctgaac
      121 attatcgcga gcccatttat acctgaatat ggctcataac accccttgct catgaccaaa
      181 atcccttaac gtgagttacg cgcgcgtcgt tccactgagc gtcagacccc gtagaaaaga
      241 tcaaaggatc ttcttgagat cctttttttc tgcgcgtaat ctgctgcttg caaacaaaaa
      301 aaccaccgct accagcggtg gtttgtttgc cggatcaaga gctaccaact ctttttccga
      361 aggtaactgg cttcagcaga gcgcagatac caaatactgt tcttctagtg tagccgtagt
      421 tagcccacca cttcaagaac tctgtagcac cgcctacata cctcgctctg ctaatcctgt
      481 taccagtggc tgctgccagt ggcgataagt cgtgtcttac cgggttggac tcaagacgat
      541 agttaccgga taaggcgcag cggtcgggct gaacgggggg ttcgtgcaca cagcccagct
      601 tggagcgaac gacctacacc gaactgagat acctacagcg tgagctatga gaaagcgcca
      661 cgcttcccga agggagaaag gcggacaggt atccggtaag cggcagggtc ggaacaggag
      721 agcgcacgag ggagcttcca gggggaaacg cctggtatct ttatagtcct gtcgggtttc
      781 gccacctctg acttgagcgt cgatttttgt gatgctcgtc aggggggcgg agcctatgga
      841 aaaacgccag caacgcggcc tttttacggt tcctggcctt ttgctggcct tttgctcaca
      901 tgttctttcc tgcgttatcc cctgattctg tggataaccg tattaccgcc tttgagtgag
      961 ctgataccgc tcgccgcagc cgaacgaccg agcgcagcga gtcagtgagc gaggaagcgg
     1021 aaggcgagag tagggaactg ccaggcatca aactaagcag aaggcccctg acggatggcc
     1081 tttttgcgtt tctacaaact ctttctgtgt tgtaaaacga cggccagtct taagctcggg
     1141 ccccctgggc ggttctgata acgagtaatc gttaatccgc aaataacgta aaaacccgct
     1201 tcggcgggtt tttttatggg gggagtttag ggaaagagca tttgtcagaa tatttaaggg
     1261 cgcctgtcac tttgcttgat atatgagaat tatttaacct tataaatgag aaaaaagcaa
     1321 cgcactttaa ataagatacg ttgctttttc gattgatgaa cacctataat taaactattc
     1381 atctattatt tatgattttt tgtatataca atatttctag tttgttaaag agaattaaga
     1441 aaataaatct cgaaaataat aaagggaaaa tcagtttttg atatcaaaat tatacatgtc
     1501 aacgataata caaaatataa tacaaactat aagatgttat cagtatttat tatcatttag
     1561 aataaatttt gtgtcgccct taattgtgag cggataacaa ttacgagctt catgcacagt
     1621 ggcgttgact caatattggc cattagccat attattcatt ggttatatag cataaatcaa
     1681 tattggctat tggccattgc atacgttgta tctatatcat aatatgtaca tttatattgg
     1741 ctcatgtcca atatgaccgc catgttggca ttgattattg actagttatt aatagtaatc
     1801 aattacgggg tcattagttc atagcccata tatggagttc cgcgttacat aacttacggt
     1861 aaatggcccg cctggctgac cgcccaacga cccccgccca ttgacgtcaa taatgacgta
     1921 tgttcccata gtaacgccaa tagggacttt ccattgacgt caatgggtgg agtatttacg
     1981 gtaaactgcc cacttggcag tacatcaagt gtatcatatg ccaagtacgc cccctattga
     2041 cgtcaatgac ggtaaatggc ccgcctggca ttatgcccag tacatgacct tatgggactt
     2101 tcctacttgg cagtacatct acgtattagt catcgctatt accatggtga tgcggttttg
     2161 gcagtacatc aatgggcgtg gatagcggtt tgactcacgg ggatttccaa gtctccaccc
     2221 cattgacgtc aatgggagtt tgttttggca ccaaaatcaa cgggactttc caaaatgtcg
     2281 taacaactcc gccccattga cgcaaatggg cggtaggcgt gtacggtggg aggtctatat
     2341 aagcagagct cgtttagtga accgtcagat cgcctggaga cgccatccac gctgttttga
     2401 cctccataga agacaccggg accgatccag cctccgcggc cgggaacggt gcattggaac
     2461 gcggattccc cgtgccaaga gtgacgtaag taccgcctat agagtctata ggcccacccc
     2521 cttggcttcg ttagaacgcg gctacaatta atacataacc ttatgtatca tacacatacg
     2581 atttaggtga cactatagaa taacatccac tttgcctttc tctccacagg tgtccactcc
     2641 caggtccaac tgcacctcgg ttctatcgaa aacgcgcctg ctagcgccac catgaagacc
     2701 atcattgccc tgagctacat cttctgcctg gtgttcgctg cggccgccgc aagaggacct
     2761 agatgttctc aacctggcga gacatgcctg aacggcggaa agtgtgaagc cgccaatgga
     2821 accgaagcct gtgtgtgtgg cggagccttt gtgggcccta gatgtcaaga ccccaatcct
     2881 tgtctgagca ccccttgcaa gaatgccggc acctgtcacg tggtggatag aagaggcgtg
     2941 gccgattacg cctgtagctg tgcccttggc tttagcggcc ctctgtgtct gacacctctg
     3001 gacaacgcct gcctgacaaa cccctgtaga aacggcggca catgcgatct gctgaccctg
     3061 accgagtaca agtgcagatg tcctcctgga tggtccggca agagctgtca gcaagccgat
     3121 ccttgtgcca gcaatccttg cgccaatggc ggccagtgtc tgccttttga ggccagctac
     3181 atctgccact gtcctccaag ctttcacggc cctacctgca gacaggatgt gaacgagtgt
     3241 ggccagaaac ctggcctgtg tagacatggc ggaacctgcc acaacgaagt gggcagctac
     3301 agatgcgtgt gcagagccac tcacaccgga cctaattgcg agaggcctta cgtgccatgc
     3361 agcccatcac cttgtcagaa cggcgggact tgtagaccta ccggcgacgt gacacacgag
     3421 tgtgcttgtc tgcctggctt caccggccag aactgcgagg aaaacatcga cgactgcccc
     3481 ggcaacaact gcaaaaatgg cggagcatgt gtggacggcg tgaacaccta caactgtaga
     3541 tgccctccag agtggacagg ccagtactgc acagaggatg tggatgagtg ccagctgatg
     3601 cccaatgcct gccagaatgg cggcacttgc cataataccc acggcggcta caactgcgtg
     3661 tgtgtgaatg gatggaccgg cgaggactgc tccgagaaca tcgatgattg tgcctccgcc
     3721 gcctgtttcc acggcgccac atgtcatgat agagtggcca gcttctactg cgagtgccct
     3781 cacggaagaa caggcctgct gtgtcacctg aacgacgcct gcatcagcaa tccctgcaac
     3841 gagggcagca actgcgacac caatcctgtg aacggcaagg ccatctgtac atgccctagc
     3901 ggctatacag gacctgcctg tagtcaggac gtggacgaat gttctctggg cgccaatcca
     3961 tgcgagcacg ccggcaaatg tatcaacacc ctgggcagct tcgagtgcca gtgcctgcaa
     4021 ggatatacag gccccagatg cgagatcgat gtgaatgaat gcgtcagcaa cccttgccag
     4081 aacgatgcca cctgtctgga ccagatcggc gagttccagt gcatctgtat gcctggctat
     4141 gagggcgtgc actgcgaagt gaataccgac gaatgcgcca gctctccctg cctgcacaat
     4201 ggcagatgcc tggacaagat caatgagttt cagtgcgagt gtcccaccgg ctttacaggc
     4261 cacctgtgcc agtatgatgt cgacgagtgc gcctccacac cttgcaaaaa cggcgccaag
     4321 tgcctggacg gccccaatac ctacacttgt gtgtgcaccg agggctacac cggaacacac
     4381 tgcgaggtgg acattgatga gtgcgacccc gatccatgtc actacggcag ctgtaaagac
     4441 ggcgtggcaa ccttcacatg cctgtgcaga cctggctata ctggccacca ctgcgagact
     4501 aacatcaacg agtgtagcag ccagccatgc aggcacggtg gaacctgtca ggacagagac
     4561 aatgcctacc tgtgcttctg cctgaagggc accaccgggc ctaactgtga aatcaacctg
     4621 gacgactgcg caagcagccc ttgcgattct ggcacttgtc tggataagat cgacggctat
     4681 gagtgtgcct gcgagcctgg atacaccggc agcatgtgca acatcaatat cgatgaatgc
     4741 gctggcaacc catgtcacaa tggcgggacc tgtgaagatg gcatcaacgg cttcacctgt
     4801 cggtgccctg agggctacca tgatcctacc tgtctgtccg aagtgaacga atgcaatagc
     4861 aacccctgcg tgcacggcgc ctgcagagat agcctgaatg gctacaagtg cgactgcgat
     4921 ccaggctggt ccgggaccaa ctgcgatatc aacaacaacg aatgcgagtc taacccttgc
     4981 gtcaacggtg gcacttgcaa ggacatgacc agcggctacg tgtgcacctg tagagagggc
     5041 ttctctggcc ccaactgcca gaccaatatt aacgaatgtg cttctaaccc ctgcctgaac
     5101 cagggcacct gtatcgatga tgtggccggc tataagtgca actgtctgct gccttacacc
     5161 ggggccacat gcgaagttgg cgcgccgggc ggcgacaaga cccacacctg ccccccctgc
     5221 ccagctccag aactgctggg agggccttcc gtgttcctgt tcccccccaa gcccaaggac
     5281 accctgatga tcagcaggac ccccgaggtg acctgcgtgg tggtggccgt gtcccacgag
     5341 gacccagagg tgaagttcaa ctggtacgtg gacggcgtgg aggtgcacaa cgccaagacc
     5401 aagcccagag aggagcagta caacagcacc tacagggtgg tgtccgtgct gaccgtgctg
     5461 caccaggact ggctgaacgg caaagaatac aagtgcaaag tctccaacaa ggccctggct
     5521 gccccaatcg aaaagacaat cagcaaggcc aagggccagc cacgggagcc ccaggtgtac
     5581 accctgcccc ccagccggga ggagatgacc aagaaccagg tgtccctgac ctgtctggtg
     5641 aagggcttct accccagcga tatcgccgtg gagtgggaga gcaacggcca gcccgagaac
     5701 aactacaaga ccaccccccc agtgctggac agcgacggca gcttcttcct gtacagcaag
     5761 ctgaccgtgg acaagtccag gtggcagcag ggcaacgtgt tcagctgcag cgtgatgcac
     5821 gaggccctgc acaaccacta cacccagaag tccctgagcc tgagccccgg cggcagcggt
     5881 cttaatgata ttttcgaggc tcagaagatt gagtggcatg aacaccacca ccatcaccac
     5941 taaggccggc ctgtagtcac tggcacaacg cgttacccgg taagccaatc gggtatacac
     6001 ggtcgtcata ctgcagacag ggttcttcta ctttgcaaga tagtcttgag tagtaaaata
     6061 aatagataga gaaaatcagc ctcgactgtg ccttctagtt gccagccatc tgttgtttgc
     6121 ccctcccccg tgccttcctt gaccctggaa ggtgccactc ccactgtcct ttcctaataa
     6181 aatgaggaaa ttgcatcaca acactcaacc ctatctcggt ctattctttt gatttataag
     6241 ggattttgcc gatttcggcc tattggttaa aaaatgagct gatttaacaa aaatttaacg
     6301 cgaattaatt ctgtggaatg tgtgtcagtt agggtgtgga aagtccccag gctccccagc
     6361 aggcagaagt atgcaaagca tgcatctcaa ttagtcagca accaggtgtg gaaagtcccc
     6421 aggctcccca gcaggcagaa gtatgcaaag catgcatctc aattagtcag caaccatagt
     6481 cccgccccta actccgccca tcccgcccct aactccgccc agttccgccc attctccgcc
     6541 ccatggctga ctaatttttt ttatttatgc agaggccgag gccgcctctg cctctgagct
     6601 attccagaag tagtgaggag gcttttttgg aggcctaggc ttttgcaaaa agctcccggg
     6661 agcttgtata tccattttcg gatctgatca gcacgtgttg acaattaatc atcggcatag
     6721 tatatcggca tagtataata cgacaaggtg aggaactaaa ccatgaccga gtacaagccc
     6781 acggtgcgcc tcgccacccg cgacgacgtc cccagggccg tacgcaccct cgccgccgcg
     6841 ttcgccgact accccgccac gcgccacacc gtcgatccgg accgccacat cgagcgggtc
     6901 accgagctgc aagaactctt cctcacgcgc gtcgggctcg acatcggcaa ggtgtgggtc
     6961 gcggacgacg gcgccgcggt ggcggtctgg accacgccgg agagcgtcga agcgggggcg
     7021 gtgttcgccg agatcggccc gcgcatggcc gagttgagcg gttcccggct ggccgcgcag
     7081 caacagatgg aaggcctcct ggcgccgcac cggcccaagg agcccgcgtg gttcctggcc
     7141 accgtcggcg tctcgcccga ccaccagggc aagggtctgg gcagcgccgt cgtgctcccc
     7201 ggagtggagg cggccgagcg cgccggggtg cccgccttcc tggagacatc cgcgccccgc
     7261 aacctcccct tctacgagcg gctcggcttc accgtcaccg ccgacgtcga ggtgcccgaa
     7321 ggaccgcgca cctggtgcat gacccgcaag cccggtgcct gacacgtgct acgagatttc
     7381 gattccaccg ccgccttcta tgaaaggttg ggcttcggaa tcgttttccg ggacgccggc
     7441 tggatgatcc tccagcgcgg ggatctcatg ctggagttct tcgcccaccc caacttgttt
     7501 attgcagctt ataatggtta caaataaagc aatagcatca caaatttcac aaataaagca
     7561 tttttttcac tgcattctag ttgtggtttg tccaaactca tcaatgtatc ttatcatgtc
     7621 tgtataccgt cgacctctag ctagagcttg gcgtaatcat ggtcattacc aatgcttaat
     7681 cagtgaggca cctatctcag cgatctgtct atttcgttca tccatagttg cctgactccc
     7741 cgtcgtgtag ataactacga tacgggaggg cttaccatct ggccccagcg ctgcgatgat
     7801 accgcgagaa ccacgctcac cggctccgga tttatcagca ataaaccagc cagccggaag
     7861 ggccgagcgc agaagtggtc ctgcaacttt atccgcctcc atccagtcta ttaattgttg
     7921 ccgggaagct agagtaagta gttcgccagt taatagtttg cgcaacgttg ttgccatcgc
     7981 tacaggcatc gtggtgtcac gctcgtcgtt tggtatggct tcattcagct ccggttccca
     8041 acgatcaagg cgagttacat gatcccccat gttgtgcaaa aaagcggtta gctccttcgg
     8101 tcctccgatc gttgtcagaa gtaagttggc cgcagtgtta tcactcatgg ttatggcagc
     8161 actgcataat tctcttactg tcatgccatc cgtaagatgc ttttctgtga ctggtgagta
     8221 ctcaaccaag tcattctgag aatagtgtat gcggcgaccg agttgctctt gcccggcgtc
     8281 aatacgggat aataccgcgc cacatagcag aactttaaaa gtgctcatca ttggaaaacg
     8341 ttcttcgggg cgaaaactct caaggatctt accgctgttg agatccagtt cgatgtaacc
     8401 cactcgtgca cccaactgat cttcagcatc ttttactttc accagcgttt ctgggtgagc
     8461 aaaaacagga aggcaaaatg ccgcaaaaaa gggaataagg gcgacacgga aatgttgaat
     8521 actcatattc ttcctt
//
