LOCUS       sequence-303643-        7903 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  Mammalian expression of cell-surface protein extracellular domain 
            (isoform 3) fused to COMP5AP-AviTag-9xHis. Protein is secreted from 
            cells..
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 7903)
  AUTHORS   Wojtowicz WM, Vielmetter J, Fernandes RA, Siepe DH, Eastman CL, 
            Chisholm GB, Cox S, Klock H, Anderson PW, Rue SM, Miller JJ, Glaser 
            SM, Bragstad ML, Vance J, Lam AW, Lesley SA, Zinn K, Garcia KC
  TITLE     A Human IgSF Cell-Surface Interactome Reveals a Complex Network of 
            Protein-Protein Interactions.
  JOURNAL   Cell. 2020 Aug 20;182(4):1027-1043.e17. doi: 
            10.1016/j.cell.2020.07.025.
  PUBMED    32822567
REFERENCE   2  (bases 1 to 7903)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; doi: 
            "10.1016/j.cell.2020.07"; journalName: "Cell"; date: "2020-08-20- 
            20"; volume: "182"; issue: "4"; pages: "1027-1043.e17"
COMMENT     Sequence Label: pD649-HAsp-ICAM4.3-COMP5AP-AviTag-9xHis
FEATURES             Location/Qualifiers
     source          1..7903
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     primer_bind     124..143
                     /label=Kan-R
                     /note="Kanamycin resistance gene, reverse primer"
     primer_bind     149..168
                     /label=pENTR-R
                     /note="pENTR vectors, reverse primer"
     rep_origin      254..842
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     743..762
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     primer_bind     996..1013
                     /label=L4440
                     /note="L4440 vector, forward primer"
     primer_bind     1111..1128
                     /label=M13 Forward
                     /note="In lacZ gene. Also called M13-F20 or M13 (-21) 
                     Forward"
     primer_bind     1112..1128
                     /label=M13 fwd
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     protein_bind    1584..1600
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     enhancer        1767..2146
                     /label=CMV enhancer
                     /note="human cytomegalovirus immediate early enhancer"
     promoter        2147..2350
                     /label=CMV promoter
                     /note="human cytomegalovirus (CMV) immediate early 
                     promoter"
     primer_bind     2301..2321
                     /label=CMV-F
                     /note="Human CMV immediate early promoter, forward primer"
     primer_bind     2347..2371
                     /label=LNCX
                     /note="Human CMV promoter, forward primer"
     promoter        2581..2599
                     /label=SP6 promoter
                     /note="promoter for bacteriophage SP6 RNA polymerase"
     primer_bind     2581..2598
                     /label=SP6
                     /note="SP6 promoter, forward primer"
     primer_bind     2612..2631
                     /label=pMT2-F
                     /note="Synthetic intron, forward primer"
     CDS             3508..3543
                     /codon_start=1
                     /product="epitope tag derived from human Protein C (Stearns
                     et al., 1988)"
                     /label=Protein C tag
                     /translation="EDQVDPRLIDGK"
     CDS             3553..3576
                     /codon_start=1
                     /product="recognition and cleavage site for human 
                     rhinovirus 3C and PreScission proteases"
                     /label=HRV 3C site
                     /translation="LEVLFQGP"
     CDS             5236..5280
                     /codon_start=1
                     /product="peptide tag that allows for enzymatic 
                     biotinylation"
                     /label=AviTag(TM)
                     /translation="GLNDIFEAQKIEWHE"
     CDS             5281..5307
                     /codon_start=1
                     /product="9xHis affinity tag"
                     /label=9xHis
                     /translation="HHHHHHHHH"
     primer_bind     complement(5447..5464)
                     /label=BGH-rev
                     /note="Bovine growth hormone terminator, reverse primer. 
                     Also called BGH reverse"
     polyA_signal    5453..5564
                     /label=bGH poly(A) signal
                     /note="bovine growth hormone polyadenylation signal"
     primer_bind     complement(5682..5702)
                     /label=pBABE 3'
                     /note="SV40 enhancer, reverse primer for pBABE vectors"
     promoter        5687..6016
                     /label=SV40 promoter
                     /note="SV40 enhancer and early promoter"
     rep_origin      5867..6002
                     /label=SV40 ori
                     /note="SV40 origin of replication"
     primer_bind     5929..5948
                     /label=SV40pro-F
                     /note="SV40 promoter/origin, forward primer"
     promoter        6064..6111
                     /label=EM7 promoter
                     /note="synthetic bacterial promoter "
     CDS             6130..6729
                     /codon_start=1
                     /gene="pac from Streptomyces alboniger"
                     /product="puromycin N-acetyltransferase"
                     /label=PuroR
                     /note="confers resistance to puromycin"
                     /translation="MTEYKPTVRLATRDDVPRAVRTLAAAFADYPATRHTVDPDRHIER
                     VTELQELFLTRVGLDIGKVWVADDGAAVAVWTTPESVEAGAVFAEIGPRMAELSGSRLA
                     AQQQMEGLLAPHRPKEPAWFLATVGVSPDHQGKGLGSAVVLPGVEAAERAGVPAFLETS
                     APRNLPFYERLGFTVTADVEVPEGPRTWCMTRKPGA"
     primer_bind     complement(6130..6149)
                     /label=Puro-R
                     /note="Puromycin resistance gene, reverse primer. Also 
                     called puro-variant-R"
     primer_bind     6626..6646
                     /label=Puro-F
                     /note="Puromycin resistance gene, forward primer"
     polyA_signal    6859..6980
                     /label=SV40 poly(A) signal
                     /note="SV40 polyadenylation signal"
     primer_bind     complement(6896..6915)
                     /label=SV40pA-R
                     /note="SV40 polyA, reverse primer"
     primer_bind     6950..6969
                     /label=EBV-rev
                     /note="SV40 polyA terminator, reverse primer"
     CDS             complement(join(7033..7824,7825..7893))
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     7656..7675
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
     promoter        complement(join(7894..7903,1..82))
                     /gene="bla"
                     /label=AmpR promoter
ORIGIN
        1 tttcaatatt attgaagcat ttatcagggt tattgtctca tgagcggata catatttgaa
       61 tgtatttaga aaaataaaca aataggggtc agtgttacaa ccaattaacc aattctgaac
      121 attatcgcga gcccatttat acctgaatat ggctcataac accccttgct catgaccaaa
      181 atcccttaac gtgagttacg cgcgcgtcgt tccactgagc gtcagacccc gtagaaaaga
      241 tcaaaggatc ttcttgagat cctttttttc tgcgcgtaat ctgctgcttg caaacaaaaa
      301 aaccaccgct accagcggtg gtttgtttgc cggatcaaga gctaccaact ctttttccga
      361 aggtaactgg cttcagcaga gcgcagatac caaatactgt tcttctagtg tagccgtagt
      421 tagcccacca cttcaagaac tctgtagcac cgcctacata cctcgctctg ctaatcctgt
      481 taccagtggc tgctgccagt ggcgataagt cgtgtcttac cgggttggac tcaagacgat
      541 agttaccgga taaggcgcag cggtcgggct gaacgggggg ttcgtgcaca cagcccagct
      601 tggagcgaac gacctacacc gaactgagat acctacagcg tgagctatga gaaagcgcca
      661 cgcttcccga agggagaaag gcggacaggt atccggtaag cggcagggtc ggaacaggag
      721 agcgcacgag ggagcttcca gggggaaacg cctggtatct ttatagtcct gtcgggtttc
      781 gccacctctg acttgagcgt cgatttttgt gatgctcgtc aggggggcgg agcctatgga
      841 aaaacgccag caacgcggcc tttttacggt tcctggcctt ttgctggcct tttgctcaca
      901 tgttctttcc tgcgttatcc cctgattctg tggataaccg tattaccgcc tttgagtgag
      961 ctgataccgc tcgccgcagc cgaacgaccg agcgcagcga gtcagtgagc gaggaagcgg
     1021 aaggcgagag tagggaactg ccaggcatca aactaagcag aaggcccctg acggatggcc
     1081 tttttgcgtt tctacaaact ctttctgtgt tgtaaaacga cggccagtct taagctcggg
     1141 ccccctgggc ggttctgata acgagtaatc gttaatccgc aaataacgta aaaacccgct
     1201 tcggcgggtt tttttatggg gggagtttag ggaaagagca tttgtcagaa tatttaaggg
     1261 cgcctgtcac tttgcttgat atatgagaat tatttaacct tataaatgag aaaaaagcaa
     1321 cgcactttaa ataagatacg ttgctttttc gattgatgaa cacctataat taaactattc
     1381 atctattatt tatgattttt tgtatataca atatttctag tttgttaaag agaattaaga
     1441 aaataaatct cgaaaataat aaagggaaaa tcagtttttg atatcaaaat tatacatgtc
     1501 aacgataata caaaatataa tacaaactat aagatgttat cagtatttat tatcatttag
     1561 aataaatttt gtgtcgccct taattgtgag cggataacaa ttacgagctt catgcacagt
     1621 ggcgttgact caatattggc cattagccat attattcatt ggttatatag cataaatcaa
     1681 tattggctat tggccattgc atacgttgta tctatatcat aatatgtaca tttatattgg
     1741 ctcatgtcca atatgaccgc catgttggca ttgattattg actagttatt aatagtaatc
     1801 aattacgggg tcattagttc atagcccata tatggagttc cgcgttacat aacttacggt
     1861 aaatggcccg cctggctgac cgcccaacga cccccgccca ttgacgtcaa taatgacgta
     1921 tgttcccata gtaacgccaa tagggacttt ccattgacgt caatgggtgg agtatttacg
     1981 gtaaactgcc cacttggcag tacatcaagt gtatcatatg ccaagtacgc cccctattga
     2041 cgtcaatgac ggtaaatggc ccgcctggca ttatgcccag tacatgacct tatgggactt
     2101 tcctacttgg cagtacatct acgtattagt catcgctatt accatggtga tgcggttttg
     2161 gcagtacatc aatgggcgtg gatagcggtt tgactcacgg ggatttccaa gtctccaccc
     2221 cattgacgtc aatgggagtt tgttttggca ccaaaatcaa cgggactttc caaaatgtcg
     2281 taacaactcc gccccattga cgcaaatggg cggtaggcgt gtacggtggg aggtctatat
     2341 aagcagagct cgtttagtga accgtcagat cgcctggaga cgccatccac gctgttttga
     2401 cctccataga agacaccggg accgatccag cctccgcggc cgggaacggt gcattggaac
     2461 gcggattccc cgtgccaaga gtgacgtaag taccgcctat agagtctata ggcccacccc
     2521 cttggcttcg ttagaacgcg gctacaatta atacataacc ttatgtatca tacacatacg
     2581 atttaggtga cactatagaa taacatccac tttgcctttc tctccacagg tgtccactcc
     2641 caggtccaac tgcacctcgg ttctatcgaa aacgcgcctg ctagcgccac catgaagacc
     2701 atcattgccc tgagctacat cttctgcctg gtgttcgctg cggccgccgc tctgggaaga
     2761 agaacaaaaa gagcccagtc tcctaagggc agccctctgg ctccttctgg cacatctgtg
     2821 cctttctggg tccgaatgag ccctgagttt gtggccgtgc agcctggaaa gagcgtgcag
     2881 ctgaactgca gcaatagctg ccctcagcct cagaacagca gcctgagaac acctctgaga
     2941 cagggcaaga cactgagagg acctggctgg gtttcctacc agctgctgga cgttcgagct
     3001 tggtctagcc tggctcactg tctggttacc tgtgccggaa agaccagatg ggccaccagc
     3061 agaatcacag cctattctgt gcctggcgga ctgctcggcg gagatcctga agcttggaag
     3121 cctggccacc tgttcagaaa gcctggcgct ctgcatagac ctggcagcgg acaaagagat
     3181 ctggacctga gagtgtgctg ttggacccct agactgctgg ccgctagaga tctgcctaga
     3241 gcacctcaaa gtagaaggcc aggtggacct cagcagctcg gcacacacta taccgatgcc
     3301 agactggaac ccagggctca cagcttcggc ctgagattcc acagatgccc ctgcagagat
     3361 cctcctcact gtggcagatg tgtgcctatg caggtcccaa gctatgaggt gccaggcgtg
     3421 aaaggcgacg tgctgtgtag actgagcgag aagaaacgga acatgaagca gtccggcgag
     3481 atggccattc acggcggagg cgcgccggaa gatcaagttg atccaagatt gattgatggc
     3541 aagggcggat ctctggaggt gctgttccag ggaccaggcg gaagcggcaa tcccggcggc
     3601 gatctggccc cccagatgct gcgcgagctg caggagacca atgccgccct gcaggacgtg
     3661 cgcgagctgc tgcgccaccg cgtgaaggag atcaccttcc tgaagaacac cgtgatggag
     3721 tgcgacgcct gcggtatgca gccctctaga ggctccggct ccatcatccc agttgaggag
     3781 gagaacccgg acttctggaa ccgcgaggca gccgaggccc tgggtgccgc caagaagctg
     3841 cagcctgcac agacagccgc caagaacctc atcatcttcc tgggcgatgg gatgggggtg
     3901 tctacggtga cagctgccag gatcctaaaa gggcagaaga aggacaaact ggggcctgag
     3961 atacccctgg ccatggaccg cttcccatat gtggctctgt ccaagacata caatgtagac
     4021 aaacatgtgc cagacagtgg agccacagcc acggcctacc tgtgcggggt caagggcaac
     4081 ttccagacca ttggcttgag tgcagccgcc cgctttaacc agtgcaacac gacacgcggc
     4141 aacgaggtca tctccgtgat gaatcgggcc aagaaagcag ggaagtcagt gggagtggta
     4201 accaccacac gagtgcagca cgcctcgcca gccggcacct acgcccacac ggtgaaccgc
     4261 aactggtact cggacgccga cgtgcctgcc tcggcccgcc aggaggggtg ccaggacatc
     4321 gctacgcagc tcatctccaa catggacatt gacgtgatcc taggtggagg ccgaaagtac
     4381 atgtttcgca tgggaacccc agaccctgag tacccagatg actacagcca aggtgggacc
     4441 aggctggacg ggaagaatct ggtgcaggaa tggctggcga agcgccaggg tgcccggtat
     4501 gtgtggaacc gcactgagct catgcaggct tccctggacc cgtctgtgac ccatctcatg
     4561 ggtctctttg agcctggaga catgaaatac gagatccacc gagactccac actggacccc
     4621 tccctgatgg agatgacaga ggctgccctg cgcctgctga gcaggaaccc ccgcggcttc
     4681 ttcctcttcg tggagggtgg tcgcatcgac catggtcatc atgaaagcag ggcttaccgg
     4741 gcactgactg agacgatcat gttcgacgac gccattgaga gggcgggcca gctcaccagc
     4801 gaggaggaca cgctgagcct cgtcactgcc gaccactccc acgtcttctc cttcggaggc
     4861 taccccctgc gagggagctc catcttcggg ctggcccctg gcaaggcccg ggacaggaag
     4921 gcctacacgg tcctcctata cggaaacggt ccaggctatg tgctcaagga cggcgcccgg
     4981 ccggatgtta ccgagagcga gagcgggagc cccgagtatc ggcagcagtc agcagtgccc
     5041 ctggacgaag agacccacgc aggcgaggac gtggcggtgt tcgcgcgcgg cccgcaggcg
     5101 cacctggttc acggcgtgca ggagcagacc ttcatagcgc acgtcatggc cttcgccgcc
     5161 tgcctggagc cctacaccgc ctgcgacctg gcgccccccg ccggcaccac cgacgccgcg
     5221 cacccgggtg gcggaggact gaacgacatc ttcgaggctc agaaaatcga atggcacgaa
     5281 catcaccatc accatcacca tcaccattaa ggccggcctg tagtcactgg cacaacgcgt
     5341 tacccggtaa gccaatcggg tatacacggt cgtcatactg cagacagggt tcttctactt
     5401 tgcaagatag tcttgagtag taaaataaat agatagagaa aatcagcctc gactgtgcct
     5461 tctagttgcc agccatctgt tgtttgcccc tcccccgtgc cttccttgac cctggaaggt
     5521 gccactccca ctgtcctttc ctaataaaat gaggaaattg catcacaaca ctcaacccta
     5581 tctcggtcta ttcttttgat ttataaggga ttttgccgat ttcggcctat tggttaaaaa
     5641 atgagctgat ttaacaaaaa tttaacgcga attaattctg tggaatgtgt gtcagttagg
     5701 gtgtggaaag tccccaggct ccccagcagg cagaagtatg caaagcatgc atctcaatta
     5761 gtcagcaacc aggtgtggaa agtccccagg ctccccagca ggcagaagta tgcaaagcat
     5821 gcatctcaat tagtcagcaa ccatagtccc gcccctaact ccgcccatcc cgcccctaac
     5881 tccgcccagt tccgcccatt ctccgcccca tggctgacta atttttttta tttatgcaga
     5941 ggccgaggcc gcctctgcct ctgagctatt ccagaagtag tgaggaggct tttttggagg
     6001 cctaggcttt tgcaaaaagc tcccgggagc ttgtatatcc attttcggat ctgatcagca
     6061 cgtgttgaca attaatcatc ggcatagtat atcggcatag tataatacga caaggtgagg
     6121 aactaaacca tgaccgagta caagcccacg gtgcgcctcg ccacccgcga cgacgtcccc
     6181 agggccgtac gcaccctcgc cgccgcgttc gccgactacc ccgccacgcg ccacaccgtc
     6241 gatccggacc gccacatcga gcgggtcacc gagctgcaag aactcttcct cacgcgcgtc
     6301 gggctcgaca tcggcaaggt gtgggtcgcg gacgacggcg ccgcggtggc ggtctggacc
     6361 acgccggaga gcgtcgaagc gggggcggtg ttcgccgaga tcggcccgcg catggccgag
     6421 ttgagcggtt cccggctggc cgcgcagcaa cagatggaag gcctcctggc gccgcaccgg
     6481 cccaaggagc ccgcgtggtt cctggccacc gtcggcgtct cgcccgacca ccagggcaag
     6541 ggtctgggca gcgccgtcgt gctccccgga gtggaggcgg ccgagcgcgc cggggtgccc
     6601 gccttcctgg agacatccgc gccccgcaac ctccccttct acgagcggct cggcttcacc
     6661 gtcaccgccg acgtcgaggt gcccgaagga ccgcgcacct ggtgcatgac ccgcaagccc
     6721 ggtgcctgac acgtgctacg agatttcgat tccaccgccg ccttctatga aaggttgggc
     6781 ttcggaatcg ttttccggga cgccggctgg atgatcctcc agcgcgggga tctcatgctg
     6841 gagttcttcg cccaccccaa cttgtttatt gcagcttata atggttacaa ataaagcaat
     6901 agcatcacaa atttcacaaa taaagcattt ttttcactgc attctagttg tggtttgtcc
     6961 aaactcatca atgtatctta tcatgtctgt ataccgtcga cctctagcta gagcttggcg
     7021 taatcatggt cattaccaat gcttaatcag tgaggcacct atctcagcga tctgtctatt
     7081 tcgttcatcc atagttgcct gactccccgt cgtgtagata actacgatac gggagggctt
     7141 accatctggc cccagcgctg cgatgatacc gcgagaacca cgctcaccgg ctccggattt
     7201 atcagcaata aaccagccag ccggaagggc cgagcgcaga agtggtcctg caactttatc
     7261 cgcctccatc cagtctatta attgttgccg ggaagctaga gtaagtagtt cgccagttaa
     7321 tagtttgcgc aacgttgttg ccatcgctac aggcatcgtg gtgtcacgct cgtcgtttgg
     7381 tatggcttca ttcagctccg gttcccaacg atcaaggcga gttacatgat cccccatgtt
     7441 gtgcaaaaaa gcggttagct ccttcggtcc tccgatcgtt gtcagaagta agttggccgc
     7501 agtgttatca ctcatggtta tggcagcact gcataattct cttactgtca tgccatccgt
     7561 aagatgcttt tctgtgactg gtgagtactc aaccaagtca ttctgagaat agtgtatgcg
     7621 gcgaccgagt tgctcttgcc cggcgtcaat acgggataat accgcgccac atagcagaac
     7681 tttaaaagtg ctcatcattg gaaaacgttc ttcggggcga aaactctcaa ggatcttacc
     7741 gctgttgaga tccagttcga tgtaacccac tcgtgcaccc aactgatctt cagcatcttt
     7801 tactttcacc agcgtttctg ggtgagcaaa aacaggaagg caaaatgccg caaaaaaggg
     7861 aataagggcg acacggaaat gttgaatact catattcttc ctt
//
