LOCUS       sequence-304013-        8659 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  Mammalian expression of cell-surface protein extracellular domain 
            fused to COMP5AP-AviTag-9xHis. Protein is secreted from cells..
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 8659)
  AUTHORS   Wojtowicz WM, Vielmetter J, Fernandes RA, Siepe DH, Eastman CL, 
            Chisholm GB, Cox S, Klock H, Anderson PW, Rue SM, Miller JJ, Glaser 
            SM, Bragstad ML, Vance J, Lam AW, Lesley SA, Zinn K, Garcia KC
  TITLE     A Human IgSF Cell-Surface Interactome Reveals a Complex Network of 
            Protein-Protein Interactions.
  JOURNAL   Cell. 2020 Aug 20;182(4):1027-1043.e17. doi: 
            10.1016/j.cell.2020.07.025.
  PUBMED    32822567
REFERENCE   2  (bases 1 to 8659)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; doi: 
            "10.1016/j.cell.2020.07"; journalName: "Cell"; date: "2020-08-20- 
            20"; volume: "182"; issue: "4"; pages: "1027-1043.e17"
COMMENT     Sequence Label: pD649-HAsp-LRFN4-COMP5AP-AviTag-9xHis
FEATURES             Location/Qualifiers
     source          1..8659
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     primer_bind     124..143
                     /label=Kan-R
                     /note="Kanamycin resistance gene, reverse primer"
     primer_bind     149..168
                     /label=pENTR-R
                     /note="pENTR vectors, reverse primer"
     rep_origin      254..842
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     743..762
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     primer_bind     996..1013
                     /label=L4440
                     /note="L4440 vector, forward primer"
     primer_bind     1111..1128
                     /label=M13 Forward
                     /note="In lacZ gene. Also called M13-F20 or M13 (-21) 
                     Forward"
     primer_bind     1112..1128
                     /label=M13 fwd
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     protein_bind    1584..1600
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     enhancer        1767..2146
                     /label=CMV enhancer
                     /note="human cytomegalovirus immediate early enhancer"
     promoter        2147..2350
                     /label=CMV promoter
                     /note="human cytomegalovirus (CMV) immediate early 
                     promoter"
     primer_bind     2301..2321
                     /label=CMV-F
                     /note="Human CMV immediate early promoter, forward primer"
     primer_bind     2347..2371
                     /label=LNCX
                     /note="Human CMV promoter, forward primer"
     promoter        2581..2599
                     /label=SP6 promoter
                     /note="promoter for bacteriophage SP6 RNA polymerase"
     primer_bind     2581..2598
                     /label=SP6
                     /note="SP6 promoter, forward primer"
     primer_bind     2612..2631
                     /label=pMT2-F
                     /note="Synthetic intron, forward primer"
     CDS             4264..4299
                     /codon_start=1
                     /product="epitope tag derived from human Protein C (Stearns
                     et al., 1988)"
                     /label=Protein C tag
                     /translation="EDQVDPRLIDGK"
     CDS             4309..4332
                     /codon_start=1
                     /product="recognition and cleavage site for human 
                     rhinovirus 3C and PreScission proteases"
                     /label=HRV 3C site
                     /translation="LEVLFQGP"
     CDS             5992..6036
                     /codon_start=1
                     /product="peptide tag that allows for enzymatic 
                     biotinylation"
                     /label=AviTag(TM)
                     /translation="GLNDIFEAQKIEWHE"
     CDS             6037..6063
                     /codon_start=1
                     /product="9xHis affinity tag"
                     /label=9xHis
                     /translation="HHHHHHHHH"
     primer_bind     complement(6203..6220)
                     /label=BGH-rev
                     /note="Bovine growth hormone terminator, reverse primer. 
                     Also called BGH reverse"
     polyA_signal    6209..6320
                     /label=bGH poly(A) signal
                     /note="bovine growth hormone polyadenylation signal"
     primer_bind     complement(6438..6458)
                     /label=pBABE 3'
                     /note="SV40 enhancer, reverse primer for pBABE vectors"
     promoter        6443..6772
                     /label=SV40 promoter
                     /note="SV40 enhancer and early promoter"
     rep_origin      6623..6758
                     /label=SV40 ori
                     /note="SV40 origin of replication"
     primer_bind     6685..6704
                     /label=SV40pro-F
                     /note="SV40 promoter/origin, forward primer"
     promoter        6820..6867
                     /label=EM7 promoter
                     /note="synthetic bacterial promoter "
     CDS             6886..7485
                     /codon_start=1
                     /gene="pac from Streptomyces alboniger"
                     /product="puromycin N-acetyltransferase"
                     /label=PuroR
                     /note="confers resistance to puromycin"
                     /translation="MTEYKPTVRLATRDDVPRAVRTLAAAFADYPATRHTVDPDRHIER
                     VTELQELFLTRVGLDIGKVWVADDGAAVAVWTTPESVEAGAVFAEIGPRMAELSGSRLA
                     AQQQMEGLLAPHRPKEPAWFLATVGVSPDHQGKGLGSAVVLPGVEAAERAGVPAFLETS
                     APRNLPFYERLGFTVTADVEVPEGPRTWCMTRKPGA"
     primer_bind     complement(6886..6905)
                     /label=Puro-R
                     /note="Puromycin resistance gene, reverse primer. Also 
                     called puro-variant-R"
     primer_bind     7382..7402
                     /label=Puro-F
                     /note="Puromycin resistance gene, forward primer"
     polyA_signal    7615..7736
                     /label=SV40 poly(A) signal
                     /note="SV40 polyadenylation signal"
     primer_bind     complement(7652..7671)
                     /label=SV40pA-R
                     /note="SV40 polyA, reverse primer"
     primer_bind     7706..7725
                     /label=EBV-rev
                     /note="SV40 polyA terminator, reverse primer"
     CDS             complement(join(7789..8580,8581..8649))
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     8412..8431
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
     promoter        complement(join(8650..8659,1..82))
                     /gene="bla"
                     /label=AmpR promoter
ORIGIN
        1 tttcaatatt attgaagcat ttatcagggt tattgtctca tgagcggata catatttgaa
       61 tgtatttaga aaaataaaca aataggggtc agtgttacaa ccaattaacc aattctgaac
      121 attatcgcga gcccatttat acctgaatat ggctcataac accccttgct catgaccaaa
      181 atcccttaac gtgagttacg cgcgcgtcgt tccactgagc gtcagacccc gtagaaaaga
      241 tcaaaggatc ttcttgagat cctttttttc tgcgcgtaat ctgctgcttg caaacaaaaa
      301 aaccaccgct accagcggtg gtttgtttgc cggatcaaga gctaccaact ctttttccga
      361 aggtaactgg cttcagcaga gcgcagatac caaatactgt tcttctagtg tagccgtagt
      421 tagcccacca cttcaagaac tctgtagcac cgcctacata cctcgctctg ctaatcctgt
      481 taccagtggc tgctgccagt ggcgataagt cgtgtcttac cgggttggac tcaagacgat
      541 agttaccgga taaggcgcag cggtcgggct gaacgggggg ttcgtgcaca cagcccagct
      601 tggagcgaac gacctacacc gaactgagat acctacagcg tgagctatga gaaagcgcca
      661 cgcttcccga agggagaaag gcggacaggt atccggtaag cggcagggtc ggaacaggag
      721 agcgcacgag ggagcttcca gggggaaacg cctggtatct ttatagtcct gtcgggtttc
      781 gccacctctg acttgagcgt cgatttttgt gatgctcgtc aggggggcgg agcctatgga
      841 aaaacgccag caacgcggcc tttttacggt tcctggcctt ttgctggcct tttgctcaca
      901 tgttctttcc tgcgttatcc cctgattctg tggataaccg tattaccgcc tttgagtgag
      961 ctgataccgc tcgccgcagc cgaacgaccg agcgcagcga gtcagtgagc gaggaagcgg
     1021 aaggcgagag tagggaactg ccaggcatca aactaagcag aaggcccctg acggatggcc
     1081 tttttgcgtt tctacaaact ctttctgtgt tgtaaaacga cggccagtct taagctcggg
     1141 ccccctgggc ggttctgata acgagtaatc gttaatccgc aaataacgta aaaacccgct
     1201 tcggcgggtt tttttatggg gggagtttag ggaaagagca tttgtcagaa tatttaaggg
     1261 cgcctgtcac tttgcttgat atatgagaat tatttaacct tataaatgag aaaaaagcaa
     1321 cgcactttaa ataagatacg ttgctttttc gattgatgaa cacctataat taaactattc
     1381 atctattatt tatgattttt tgtatataca atatttctag tttgttaaag agaattaaga
     1441 aaataaatct cgaaaataat aaagggaaaa tcagtttttg atatcaaaat tatacatgtc
     1501 aacgataata caaaatataa tacaaactat aagatgttat cagtatttat tatcatttag
     1561 aataaatttt gtgtcgccct taattgtgag cggataacaa ttacgagctt catgcacagt
     1621 ggcgttgact caatattggc cattagccat attattcatt ggttatatag cataaatcaa
     1681 tattggctat tggccattgc atacgttgta tctatatcat aatatgtaca tttatattgg
     1741 ctcatgtcca atatgaccgc catgttggca ttgattattg actagttatt aatagtaatc
     1801 aattacgggg tcattagttc atagcccata tatggagttc cgcgttacat aacttacggt
     1861 aaatggcccg cctggctgac cgcccaacga cccccgccca ttgacgtcaa taatgacgta
     1921 tgttcccata gtaacgccaa tagggacttt ccattgacgt caatgggtgg agtatttacg
     1981 gtaaactgcc cacttggcag tacatcaagt gtatcatatg ccaagtacgc cccctattga
     2041 cgtcaatgac ggtaaatggc ccgcctggca ttatgcccag tacatgacct tatgggactt
     2101 tcctacttgg cagtacatct acgtattagt catcgctatt accatggtga tgcggttttg
     2161 gcagtacatc aatgggcgtg gatagcggtt tgactcacgg ggatttccaa gtctccaccc
     2221 cattgacgtc aatgggagtt tgttttggca ccaaaatcaa cgggactttc caaaatgtcg
     2281 taacaactcc gccccattga cgcaaatggg cggtaggcgt gtacggtggg aggtctatat
     2341 aagcagagct cgtttagtga accgtcagat cgcctggaga cgccatccac gctgttttga
     2401 cctccataga agacaccggg accgatccag cctccgcggc cgggaacggt gcattggaac
     2461 gcggattccc cgtgccaaga gtgacgtaag taccgcctat agagtctata ggcccacccc
     2521 cttggcttcg ttagaacgcg gctacaatta atacataacc ttatgtatca tacacatacg
     2581 atttaggtga cactatagaa taacatccac tttgcctttc tctccacagg tgtccactcc
     2641 caggtccaac tgcacctcgg ttctatcgaa aacgcgcctg ctagcgccac catgaagacc
     2701 atcattgccc tgagctacat cttctgcctg gtgttcgctg cggccgcctg tcctttgcct
     2761 tgcgtgtgtc agaatctgag cgagagcctg agcaccctgt gtgcccatag aggcctgctg
     2821 ttcgtgcctc ctaatgtgga cagacggacc gtggaactga gactggccga caacttcatc
     2881 caggctctgg gccctccaga cttcagaaac atgaccggcc tggtggatct gaccctgagc
     2941 agaaacgcca tcaccagaat tggcgccaga gccttcggcg acctggaaag cctgagaagc
     3001 ctgcacctgg acggcaacag actggtggaa ctcggcaccg gatctctgag aggccctgtg
     3061 aatctgcagc acctgatcct gagcggcaac cagctgggaa gaattgcccc tggcgccttc
     3121 gacgacttcc tggaatctct ggaagatctg gacctgagct acaacaacct gagacaggtg
     3181 ccatgggccg gcattggagc tatgcctgct ctgcacaccc tgaacctgga ccacaacctg
     3241 atcgatgctc tgcctcctgg cgcttttgct cagctgggac aactgagcag actggacctc
     3301 accagcaaca ggctggctac tctggctccc gatcctctgt ttagcagagg cagagatgcc
     3361 gaggcctctc ctgctcctct ggtgctgagc tttagcggca atcccctgca ctgcaactgc
     3421 gagctgctgt ggcttcggag actggctaga cccgacgatc tggaaacctg cgcttctcct
     3481 cctggactgg ccggcagata cttttgggct gtgcctgagg gcgagttcag ctgcgaacct
     3541 cctctgatcg ccagacacac ccagagactg tgggtgctcg aaggacagag ggccacactg
     3601 agatgtagag ccctgggaga tcccgctcct accatgcatt gggtcggacc cgatgataga
     3661 ctcgtgggca acagcagcag agccagggcc tttcctaatg gcaccctgga aatcggcgtt
     3721 accggtgctg gcgacgctgg cggatacacc tgtatcgcta caaatcctgc cggcgaggcc
     3781 accgctagag ttgaactgag agttctggcc ctgcctcacg gcggaaatag ctctgctgaa
     3841 ggtggcagac ccggaccttc tgatattgcc gcctctgcca gaacagccgc tgaaggcgag
     3901 ggaacactgg aatctgaacc cgccgtgcaa gtgaccgaag tgacagccac atctggcctg
     3961 gtgtcttggg gacctggtag acctgctgat cccgtgtgga tgttccagat ccagtacaac
     4021 agctccgagg acgagacact gatctacaga atcgtgcccg ccagcagcca ccactttctg
     4081 ctgaaacatc tggtgcctgg cgccgactac gatctgtgtc tgctggctct ttctcctgcc
     4141 gccggtccta gtgatctgac cgctacaaga ctgctgggct gcgcccactt tagcaccttg
     4201 cctgcttctc cactgtgtca cgccctgcag gctcatgtgc tcggaggaac acttggcgcg
     4261 ccggaagatc aagttgatcc aagattgatt gatggcaagg gcggatctct ggaggtgctg
     4321 ttccagggac caggcggaag cggcaatccc ggcggcgatc tggcccccca gatgctgcgc
     4381 gagctgcagg agaccaatgc cgccctgcag gacgtgcgcg agctgctgcg ccaccgcgtg
     4441 aaggagatca ccttcctgaa gaacaccgtg atggagtgcg acgcctgcgg tatgcagccc
     4501 tctagaggct ccggctccat catcccagtt gaggaggaga acccggactt ctggaaccgc
     4561 gaggcagccg aggccctggg tgccgccaag aagctgcagc ctgcacagac agccgccaag
     4621 aacctcatca tcttcctggg cgatgggatg ggggtgtcta cggtgacagc tgccaggatc
     4681 ctaaaagggc agaagaagga caaactgggg cctgagatac ccctggccat ggaccgcttc
     4741 ccatatgtgg ctctgtccaa gacatacaat gtagacaaac atgtgccaga cagtggagcc
     4801 acagccacgg cctacctgtg cggggtcaag ggcaacttcc agaccattgg cttgagtgca
     4861 gccgcccgct ttaaccagtg caacacgaca cgcggcaacg aggtcatctc cgtgatgaat
     4921 cgggccaaga aagcagggaa gtcagtggga gtggtaacca ccacacgagt gcagcacgcc
     4981 tcgccagccg gcacctacgc ccacacggtg aaccgcaact ggtactcgga cgccgacgtg
     5041 cctgcctcgg cccgccagga ggggtgccag gacatcgcta cgcagctcat ctccaacatg
     5101 gacattgacg tgatcctagg tggaggccga aagtacatgt ttcgcatggg aaccccagac
     5161 cctgagtacc cagatgacta cagccaaggt gggaccaggc tggacgggaa gaatctggtg
     5221 caggaatggc tggcgaagcg ccagggtgcc cggtatgtgt ggaaccgcac tgagctcatg
     5281 caggcttccc tggacccgtc tgtgacccat ctcatgggtc tctttgagcc tggagacatg
     5341 aaatacgaga tccaccgaga ctccacactg gacccctccc tgatggagat gacagaggct
     5401 gccctgcgcc tgctgagcag gaacccccgc ggcttcttcc tcttcgtgga gggtggtcgc
     5461 atcgaccatg gtcatcatga aagcagggct taccgggcac tgactgagac gatcatgttc
     5521 gacgacgcca ttgagagggc gggccagctc accagcgagg aggacacgct gagcctcgtc
     5581 actgccgacc actcccacgt cttctccttc ggaggctacc ccctgcgagg gagctccatc
     5641 ttcgggctgg cccctggcaa ggcccgggac aggaaggcct acacggtcct cctatacgga
     5701 aacggtccag gctatgtgct caaggacggc gcccggccgg atgttaccga gagcgagagc
     5761 gggagccccg agtatcggca gcagtcagca gtgcccctgg acgaagagac ccacgcaggc
     5821 gaggacgtgg cggtgttcgc gcgcggcccg caggcgcacc tggttcacgg cgtgcaggag
     5881 cagaccttca tagcgcacgt catggccttc gccgcctgcc tggagcccta caccgcctgc
     5941 gacctggcgc cccccgccgg caccaccgac gccgcgcacc cgggtggcgg aggactgaac
     6001 gacatcttcg aggctcagaa aatcgaatgg cacgaacatc accatcacca tcaccatcac
     6061 cattaaggcc ggcctgtagt cactggcaca acgcgttacc cggtaagcca atcgggtata
     6121 cacggtcgtc atactgcaga cagggttctt ctactttgca agatagtctt gagtagtaaa
     6181 ataaatagat agagaaaatc agcctcgact gtgccttcta gttgccagcc atctgttgtt
     6241 tgcccctccc ccgtgccttc cttgaccctg gaaggtgcca ctcccactgt cctttcctaa
     6301 taaaatgagg aaattgcatc acaacactca accctatctc ggtctattct tttgatttat
     6361 aagggatttt gccgatttcg gcctattggt taaaaaatga gctgatttaa caaaaattta
     6421 acgcgaatta attctgtgga atgtgtgtca gttagggtgt ggaaagtccc caggctcccc
     6481 agcaggcaga agtatgcaaa gcatgcatct caattagtca gcaaccaggt gtggaaagtc
     6541 cccaggctcc ccagcaggca gaagtatgca aagcatgcat ctcaattagt cagcaaccat
     6601 agtcccgccc ctaactccgc ccatcccgcc cctaactccg cccagttccg cccattctcc
     6661 gccccatggc tgactaattt tttttattta tgcagaggcc gaggccgcct ctgcctctga
     6721 gctattccag aagtagtgag gaggcttttt tggaggccta ggcttttgca aaaagctccc
     6781 gggagcttgt atatccattt tcggatctga tcagcacgtg ttgacaatta atcatcggca
     6841 tagtatatcg gcatagtata atacgacaag gtgaggaact aaaccatgac cgagtacaag
     6901 cccacggtgc gcctcgccac ccgcgacgac gtccccaggg ccgtacgcac cctcgccgcc
     6961 gcgttcgccg actaccccgc cacgcgccac accgtcgatc cggaccgcca catcgagcgg
     7021 gtcaccgagc tgcaagaact cttcctcacg cgcgtcgggc tcgacatcgg caaggtgtgg
     7081 gtcgcggacg acggcgccgc ggtggcggtc tggaccacgc cggagagcgt cgaagcgggg
     7141 gcggtgttcg ccgagatcgg cccgcgcatg gccgagttga gcggttcccg gctggccgcg
     7201 cagcaacaga tggaaggcct cctggcgccg caccggccca aggagcccgc gtggttcctg
     7261 gccaccgtcg gcgtctcgcc cgaccaccag ggcaagggtc tgggcagcgc cgtcgtgctc
     7321 cccggagtgg aggcggccga gcgcgccggg gtgcccgcct tcctggagac atccgcgccc
     7381 cgcaacctcc ccttctacga gcggctcggc ttcaccgtca ccgccgacgt cgaggtgccc
     7441 gaaggaccgc gcacctggtg catgacccgc aagcccggtg cctgacacgt gctacgagat
     7501 ttcgattcca ccgccgcctt ctatgaaagg ttgggcttcg gaatcgtttt ccgggacgcc
     7561 ggctggatga tcctccagcg cggggatctc atgctggagt tcttcgccca ccccaacttg
     7621 tttattgcag cttataatgg ttacaaataa agcaatagca tcacaaattt cacaaataaa
     7681 gcattttttt cactgcattc tagttgtggt ttgtccaaac tcatcaatgt atcttatcat
     7741 gtctgtatac cgtcgacctc tagctagagc ttggcgtaat catggtcatt accaatgctt
     7801 aatcagtgag gcacctatct cagcgatctg tctatttcgt tcatccatag ttgcctgact
     7861 ccccgtcgtg tagataacta cgatacggga gggcttacca tctggcccca gcgctgcgat
     7921 gataccgcga gaaccacgct caccggctcc ggatttatca gcaataaacc agccagccgg
     7981 aagggccgag cgcagaagtg gtcctgcaac tttatccgcc tccatccagt ctattaattg
     8041 ttgccgggaa gctagagtaa gtagttcgcc agttaatagt ttgcgcaacg ttgttgccat
     8101 cgctacaggc atcgtggtgt cacgctcgtc gtttggtatg gcttcattca gctccggttc
     8161 ccaacgatca aggcgagtta catgatcccc catgttgtgc aaaaaagcgg ttagctcctt
     8221 cggtcctccg atcgttgtca gaagtaagtt ggccgcagtg ttatcactca tggttatggc
     8281 agcactgcat aattctctta ctgtcatgcc atccgtaaga tgcttttctg tgactggtga
     8341 gtactcaacc aagtcattct gagaatagtg tatgcggcga ccgagttgct cttgcccggc
     8401 gtcaatacgg gataataccg cgccacatag cagaacttta aaagtgctca tcattggaaa
     8461 acgttcttcg gggcgaaaac tctcaaggat cttaccgctg ttgagatcca gttcgatgta
     8521 acccactcgt gcacccaact gatcttcagc atcttttact ttcaccagcg tttctgggtg
     8581 agcaaaaaca ggaaggcaaa atgccgcaaa aaagggaata agggcgacac ggaaatgttg
     8641 aatactcata ttcttcctt
//
