LOCUS       sequence-334685-        6520 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  Empty dox inducible vector with piggyBac, insulators, and a DTS.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 6520)
  AUTHORS   Chu D, Nguyen A, Smith SS, Vavrusova Z, Schneider RA
  TITLE     Stable integration of an optimized inducible promoter system enables
            spatiotemporal control of gene expression throughout avian 
            development.
  JOURNAL   Biol Open. 2020 Oct 6;9(10). pii: bio.055343. doi: 
            10.1242/bio.055343.
  PUBMED    32917762
REFERENCE   2  (bases 1 to 6520)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; journalName: "Biol 
            Open."; date: "2020-10-6"; volume: "9(10). pii: bio.055343. doi"; 
            pages: " 10.1242/bio.055343"
COMMENT     Sequence Label: pPIDNB
FEATURES             Location/Qualifiers
     source          1..6520
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     rep_origin      complement(4..592)
                     /direction=LEFT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     complement(84..103)
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     CDS             complement(join(675..1466,1467..1535))
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     1298..1317
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
     promoter        complement(1536..1606)
                     /gene="bla"
                     /label=AmpR promoter
     repeat_region   1610..1672
                     /label=piggyBac right (3') inverted repeat
                     /note="piggyBac transposon-specific inverted terminal 
                     repeat sequence (ITR)"
     polyA_signal    1929..2153
                     /label=bGH poly(A) signal
                     /note="bovine growth hormone polyadenylation signal"
     CDS             complement(2160..2855)
                     /codon_start=1
                     /product="bright monomeric red fluorescent protein evolved 
                     from a synthetic template (Bindels et al., 2016)"
                     /label=mScarlet-I
                     /note="matures faster than mScarlet"
                     /translation="MVSKGEAVIKEFMRFKVHMEGSMNGHEFEIEGEGEGRPYEGTQTA
                     KLKVTKGGPLPFSWDILSPQFMYGSRAFIKHPADIPDYYKQSFPEGFKWERVMNFEDGG
                     AVTVTQDTSLEDGTLIYKVKLRGTNFPPDGPVMQKKTMGWEASTERLYPEDGVLKGDIK
                     MALRLKDGGRYLADFKTTYKAKKPVQMPGAYNVDRKLDITSHNEDYTVVEQYERSEGRH
                     STGGMDELYK"
     primer_bind     complement(2435..2454)
                     /label=mCherry-F
                     /note="mCherry, forward primer"
     primer_bind     2704..2722
                     /label=mCherry-R
                     /note="mCherry, reverse primer"
     regulatory      2852..2861
                     /label=Kozak sequence
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
                     /regulatory_class="other"
     promoter        2879..3329
                     /label=TRE3G BI promoter
                     /note="3rd-generation Tet-responsive bidirectional promoter
                     that can be activated by binding of Tet-On(R) 3G"
     protein_bind    2959..2977
                     /gene="tetO"
                     /label=tet operator
                     /bound_moiety="tetracycline repressor TetR"
                     /note="bacterial operator O2 for the tetR and tetA genes"
     protein_bind    2995..3013
                     /gene="tetO"
                     /label=tet operator
                     /bound_moiety="tetracycline repressor TetR"
                     /note="bacterial operator O2 for the tetR and tetA genes"
     protein_bind    3031..3049
                     /gene="tetO"
                     /label=tet operator
                     /bound_moiety="tetracycline repressor TetR"
                     /note="bacterial operator O2 for the tetR and tetA genes"
     protein_bind    3067..3085
                     /gene="tetO"
                     /label=tet operator
                     /bound_moiety="tetracycline repressor TetR"
                     /note="bacterial operator O2 for the tetR and tetA genes"
     protein_bind    3103..3121
                     /gene="tetO"
                     /label=tet operator
                     /bound_moiety="tetracycline repressor TetR"
                     /note="bacterial operator O2 for the tetR and tetA genes"
     protein_bind    3139..3157
                     /gene="tetO"
                     /label=tet operator
                     /bound_moiety="tetracycline repressor TetR"
                     /note="bacterial operator O2 for the tetR and tetA genes"
     protein_bind    3175..3193
                     /gene="tetO"
                     /label=tet operator
                     /bound_moiety="tetracycline repressor TetR"
                     /note="bacterial operator O2 for the tetR and tetA genes"
     primer_bind     complement(3431..3450)
                     /label=Bglob-pA-R
                     /note="Rabbit beta-globin polyA region, reverse primer"
     polyA_signal    3496..3551
                     /label=beta-globin poly(A) signal
                     /note="rabbit beta-globin polyadenylation signal (Gil and 
                     Proudfoot, 1987)"
     primer_bind     complement(3550..3569)
                     /label=rbglobpA-R
                     /note="Rabbit beta-globin polyA, reverse primer. Also 
                     called rb-glob-pA-term-R"
     promoter        3867..4366
                     /label=PGK promoter
                     /note="mouse phosphoglycerate kinase 1 promoter"
     primer_bind     complement(3902..3925)
                     /label=MSCV-rev
                     /note="Murine stem cell virus, reverse primer"
     primer_bind     4299..4318
                     /label=mPGK-F
                     /note="Mouse PGK promoter, forward primer"
     regulatory      4370..4379
                     /label=Kozak sequence
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
                     /regulatory_class="other"
     CDS             4376..5083
                     /codon_start=1
                     /product="bright monomeric yellow-green fluorescent protein
                     derived from LanYFP (Shaner et al., 2013)"
                     /label=mNeonGreen
                     /translation="MVSKGEEDNMASLPATHELHIFGSINGVDFDMVGQGTGNPNDGYE
                     ELNLKSTKGDLQFSPWILVPHIGYGFHQYLPYPDGMSPFQAAMVDGSGYQVHRTMQFED
                     GASLTVNYRYTYEGSHIKGEAQVKGTGFPADGPVMTNSLTAADWCRSKKTYPNDKTIIS
                     TFKWSYTTGNGKRYRSTARTTYTFAKPMAANYLKNQPMYVFRKTELKHSKTELNFKEWQ
                     KAFTDVMGMDELYK"
     regulatory      4631..4640
                     /label=Kozak sequence
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
                     /regulatory_class="other"
     CDS             5093..5149
                     /codon_start=1
                     /product="2A peptide from porcine teschovirus-1 
                     polyprotein"
                     /label=P2A
                     /note="Eukaryotic ribosomes fail to insert a peptide bond 
                     between the Gly and Pro residues, yielding separate 
                     polypeptides."
                     /translation="ATNFSLLKQAGDVEENPGP"
     CDS             5150..5896
                     /codon_start=1
                     /product="modified rtTA protein that binds tightly to 
                     promoters containing the tet operator in the presence of 
                     doxycycline"
                     /label=Tet-On(R) 3G
                     /translation="MSRLDKSKVINSALELLNGVGIEGLTTRKLAQKLGVEQPTLYWHV
                     KNKRALLDALPIEMLDRHHTHSCPLEGESWQDFLRNNAKSYRCALLSHRDGAKVHLGTR
                     PTEKQYETLENQLAFLCQQGFSLENALYALSAVGHFTLGCVLEEQEHQVAKEERETPTT
                     DSMPPLLKQAIELFDRQGAEPAFLFGLELIICGLEKQLKCESGGPTDALDDFDLDMLPA
                     DALDDFDLDMLPADALDDFDLDMLPG"
     polyA_signal    5900..6124
                     /label=bGH poly(A) signal
                     /note="bovine growth hormone polyadenylation signal"
     repeat_region   6482..6516
                     /label=piggyBac left (5') inverted repeat
                     /note="piggyBac transposon-specific inverted terminal 
                     repeat sequence (ITR)"
ORIGIN
        1 gtttttccat aggctccgcc cccctgacga gcatcacaaa aatcgacgct caagtcagag
       61 gtggcgaaac ccgacaggac tataaagata ccaggcgttt ccccctggaa gctccctcgt
      121 gcgctctcct gttccgaccc tgccgcttac cggatacctg tccgcctttc tcccttcggg
      181 aagcgtggcg ctttctcata gctcacgctg taggtatctc agttcggtgt aggtcgttcg
      241 ctccaagctg ggctgtgtgc acgaaccccc cgttcagccc gaccgctgcg ccttatccgg
      301 taactatcgt cttgagtcca acccggtaag acacgactta tcgccactgg cagcagccac
      361 tggtaacagg attagcagag cgaggtatgt aggcggtgct acagagttct tgaagtggtg
      421 gcctaactac ggctacacta gaagaacagt atttggtatc tgcgctctgc tgaagccagt
      481 taccttcgga aaaagagttg gtagctcttg atccggcaaa caaaccaccg ctggtagcgg
      541 tggttttttt gtttgcaagc agcagattac gcgcagaaaa aaaggatctc aagaagatcc
      601 ttttggttgc tgactaattg agatgcatgc tttgcatact tctgcctgct ggggagcctg
      661 gggactttcc acacctacca atgcttaatc agtgaggcac ctatctcagc gatctgtcta
      721 tttcgttcat ccatagttgc ctgactcccc gtcgtgtaga taactacgat acgggagggc
      781 ttaccatctg gccccagtgc tgcaatgata ccgcgagacc cacgctcacc ggctccagat
      841 ttatcagcaa taaaccagcc agccggaagg gccgagcgca gaagtggtcc tgcaacttta
      901 tccgcctcca tccagtctat taattgttgc cgggaagcta gagtaagtag ttcgccagtt
      961 aatagtttgc gcaacgttgt tgccattgct acaggcatcg tggtgtcacg ctcgtcgttt
     1021 ggtatggctt cattcagctc cggttcccaa cgatcaaggc gagttacatg atcccccatg
     1081 ttgtgcaaaa aagcggttag ctccttcggt cctccgatcg ttgtcagaag taagttggcc
     1141 gcagtgttat cactcatggt tatggcagca ctgcataatt ctcttactgt catgccatcc
     1201 gtaagatgct tttctgtgac tggtgagtac tcaaccaagt cattctgaga atagtgtatg
     1261 cggcgaccga gttgctcttg cccggcgtca atacgggata ataccgcgcc acatagcaga
     1321 actttaaaag tgctcatcat tggaaaacgt tcttcggggc gaaaactctc aaggatctta
     1381 ccgctgttga gatccagttc gatgtaaccc actcgtgcac ccaactgatc ttcagcatct
     1441 tttactttca ccagcgtttc tgggtgagca aaaacaggaa ggcaaaatgc cgcaaaaaag
     1501 ggaataaggg cgacacggaa atgttgaata ctcatactct tcctttttca atattattga
     1561 agcatttatc agggttattg tctcatgagc ggatacatat ttgaattaac cctagaaaga
     1621 taatcatatt gtgacgtacg ttaaagataa tcatgcgtaa aattgacgca tgtgttttat
     1681 cggtctgtat atcgaggttt atttattaat ttgaatagat attaagtttt attatattta
     1741 cacttacata ctaataataa attcaacaaa caatttattt atgtttattt atttattaaa
     1801 aaaaaacaaa aactcaaaat ttcttctata aagtaacaaa agaggggcgg aagggacgtt
     1861 aggagggagg cagggaggca gggaggcagg gaggaacgga gggagagcac gagtcatcta
     1921 gaggacagcc atagagccca ccgcatcccc agcatgcctg ctattgtctt cccaatcctc
     1981 ccccttgctg tcctgcccca ccccaccccc cagaatagaa tgacacctac tcagacaatg
     2041 cgatgcaatt tcctcatttt attaggaaag gacagtggga gtggcacctt ccagggtcaa
     2101 ggaaggcacg ggggaggggc aaacaacaga tggctggcaa ctagaaggca cagtcgtcac
     2161 ttgtacagct cgtccatgcc gccggtggag tggcggccct cggagcgttc gtactgttcc
     2221 accacggtgt agtcctcgtt gtgggaggtg atgtccaact tgcggtcgac gttgtaggcg
     2281 ccgggcatct gcacgggctt cttggccttg taggtggtct tgaagtccgc caggtagcgg
     2341 ccgccgtcct tcaggcgcag ggccatctta atgtcgccct tcagcacgcc gtcctcgggg
     2401 tacaaccgct cggtggacgc ttcccagccc attgtcttct tctgcattac ggggccgtca
     2461 ggagggaagt tggtgccgcg gagcttcacc ttgtagatca gggtgccgtc ctccagggag
     2521 gtgtcctggg tcacggtcac ggcgccgccg tcctcgaagt tcatcacgcg ctcccacttg
     2581 aagccctcgg ggaaggactg cttatagtag tcggggatgt cggcggggtg cttgatgaag
     2641 gccctggagc cgtacatgaa ctgaggggac aggatgtccc aggagaaggg cagggggcca
     2701 cccttggtca ccttcagctt ggcggtctgg gtgccctcgt aggggcggcc ctcgccctcg
     2761 ccctcgatct cgaactcgtg gccgttcatg gagccctcca tgtgcacctt gaaccgcatg
     2821 aactccttga tcactgcctc gcccttgctc accatggtgg cggcggtgaa ttctccaggc
     2881 gatctgacgg ttcactaaac gagctctgct tatataggcc tcccaccgta cacgccacct
     2941 cgacatactc gagtttactc cctatcagtg atagagaacg tatgaagagt ttactcccta
     3001 tcagtgatag agaacgtatg cagactttac tccctatcag tgatagagaa cgtataagga
     3061 gtttactccc tatcagtgat agagaacgta tgaccagttt actccctatc agtgatagag
     3121 aacgtatcta cagtttactc cctatcagtg atagagaacg tatatccagt ttactcccta
     3181 tcagtgatag agaacgtata agctttaggc gtgtacggtg ggcgcctata aaagcagagc
     3241 tcgtttagtg aaccgtcaga tcgcctggag caattccaca acacttttgt cttataccaa
     3301 ctttccgtac cacttcctac cctcgtaaag ccgccacctt aagagtcgtc acctgcagta
     3361 caagtgaagc ggccggccgc cagcacagtg gtcgatcgac caatgccctg gctcacaaat
     3421 accactgaga tctttttccc tctgccaaaa attatgggga catcatgaag ccccttgagc
     3481 atctgacttc tggctaataa aggaaattta ttttcattgc aatagtgtgt tggaattttt
     3541 tgtgtctctc actcggaagg acatatggga gggcaaatca tttaaaacat cagaatgagt
     3601 atttggttta gagtttggca acatatgccc atatgctggc tgccatgaac aaaggttggc
     3661 tataaagagg tcatcagtat atgaaacagc cccctgctgt ccattcctta ttccatagaa
     3721 aagccttgac ttgaggttag atttttttta tattttgttt tgtgttattt ttttctttaa
     3781 catccctaaa attttcctta catgttttac tagccagatt tttcctcctc tcctgactac
     3841 tcccagtcat agctgtccct cttctcgggt aggggaggcg cttttcccaa ggcagtctgg
     3901 agcatgcgct ttagcagccc cgctgggcac ttggcgctac acaagtggcc tctggcctcg
     3961 cacacattcc acatccaccg gtaggcgcca accggctccg ttctttggtg gccccttcgc
     4021 gccaccttct actcctcccc tagtcaggaa gttccccccc gccccgcagc tcgcgtcgtg
     4081 caggacgtga caaatggaag tagcacgtct cactagtctc gtgcagatgg acagcaccgc
     4141 tgagcaatgg aagcgggtag gcctttgggg cagcggccaa tagcagcttt gctccttcgc
     4201 tttctgggct cagaggctgg gaaggggtgg gtccgggggc gggctcaggg gcgggctcag
     4261 gggcggggcg ggcgcccgaa ggtcctccgg aggcccggca ttctgcacgc ttcaaaagcg
     4321 cacgtctgcc gcgctgttct cctcttcctc atctccgggc ctttcggccg ccaccatggt
     4381 gagcaagggc gaggaggata acatggcctc tctcccagcg acacatgagt tacacatctt
     4441 tggctccatc aacggtgtgg actttgacat ggtgggtcag ggcaccggca atccaaatga
     4501 tggttatgag gagttaaacc tgaagtccac caagggtgac ctccagttct ccccctggat
     4561 tctggtccct catatcgggt atggcttcca tcagtacctg ccctaccctg acgggatgtc
     4621 gcctttccag gccgccatgg tagatggctc cggataccaa gtccatcgca caatgcagtt
     4681 tgaagatggt gcctccctta ctgttaacta ccgctacacc tacgagggaa gccacatcaa
     4741 aggagaggcc caggtgaagg ggactggttt ccctgctgac ggtcctgtga tgaccaactc
     4801 gctgaccgct gcggactggt gcaggtcgaa gaagacttac cccaacgaca aaaccatcat
     4861 cagtaccttt aagtggagtt acaccactgg aaatggcaag cgctaccgga gcactgcgcg
     4921 gaccacctac acctttgcca agccaatggc ggctaactat ctgaagaacc agccgatgta
     4981 cgtgttccgt aagacggagc tcaagcactc caagaccgag ctcaacttca aggagtggca
     5041 aaaggccttt accgatgtga tgggcatgga cgagctgtac aagggcagcg gcgccaccaa
     5101 cttcagcctg ctgaagcagg ccggcgacgt ggaggagaac cccggcccca tgtctagact
     5161 ggacaagagc aaagtcataa actctgctct ggaattactc aatggagtcg gtatcgaagg
     5221 cctgacgaca aggaaactcg ctcaaaagct gggagttgag cagcctaccc tgtactggca
     5281 cgtgaagaac aagcgggccc tgctcgatgc cctgccaatc gagatgctgg acaggcatca
     5341 tacccactcc tgccccctgg aaggcgagtc atggcaagac tttctgcgga acaacgccaa
     5401 gtcataccgc tgtgctctcc tctcacatcg cgacggggct aaagtgcatc tcggcacccg
     5461 cccaacagag aaacagtacg aaaccctgga aaatcagctc gcgttcctgt gtcagcaagg
     5521 cttctccctg gagaacgcac tgtacgctct gtccgccgtg ggccacttta cactgggctg
     5581 cgtattggag gaacaggagc atcaagtagc aaaagaggaa agagagacac ctaccaccga
     5641 ttctatgccc ccacttctga aacaagcaat tgagctgttc gaccggcagg gagccgaacc
     5701 tgccttcctt ttcggcctgg aactaatcat atgtggcctg gagaaacagc taaagtgcga
     5761 aagcggcggg ccgaccgacg cccttgacga ttttgactta gacatgctcc cagccgatgc
     5821 ccttgacgac tttgaccttg atatgctgcc tgctgacgct cttgacgatt ttgaccttga
     5881 catgctcccc gggtaacgac tgtgccttct agttgccagc catctgttgt ttgcccctcc
     5941 cccgtgcctt ccttgaccct ggaaggtgcc actcccactg tcctttccta ataaaatgag
     6001 gaaattgcat cgcattgtct gagtaggtgt cattctattc tggggggtgg ggtggggcag
     6061 gacagcaagg gggaggattg ggaagacaat agcaggcatg ctggggatgc ggtgggctct
     6121 atggggctgt ctaccactgt cgctccctcc gttcctccct gcctccctgc ctccctgcct
     6181 ccctcctaac gtcccttccg cccctctgat atctataaca agaaaatata tatataataa
     6241 gttatcacgt aagtagaaca cgaaataaca atataattat cgtatgagtt aaatcttaaa
     6301 agtcacgtaa aagataatca tgcgtcattt tgactcacgc ggttgttata gttcaaaatc
     6361 agtgacactt accgcattga caagcacgcc tcacgggagc tccaagcggc gactgagatg
     6421 tcctaaatgc acagcgacgg attcgcgcta tttagaaaga gagagcaata tttcaagaat
     6481 gcatgcgtca attttacgca gactatcttt ctagggttaa
//
