LOCUS       sequence-351028-        7909 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  Plasmid expressing mammalian codon optimized wt DpbCasX, sgRNAv2 
            scaffold, and restriction sites to clone in new spacers.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 7909)
  AUTHORS   Tsuchida CA, Zhang S, Doost MS, Zhao Y, Wang J, O'Brien E, Fang H, 
            Li CP, Li D, Hai ZY, Chuck J, Brotzmann J, Vartoumian A, Burstein D,
            Chen XW, Nogales E, Doudna JA, Liu JG
  TITLE     Chimeric CRISPR-CasX enzymes and guide RNAs for improved genome 
            editing activity.
  JOURNAL   Mol Cell. 2022 Mar 17;82(6):1199-1209.e6. doi: 
            10.1016/j.molcel.2022.02.002. Epub 2022 Feb 25.
  PUBMED    35219382
REFERENCE   2  (bases 1 to 7909)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; doi: 
            "10.1016/j.molcel.2022.02.002"; journalName: "Mol Cell"; date: 
            "2022-03-17- 17"; volume: "82"; issue: "6"; pages: "1199-1209.e6"
COMMENT     Sequence Label: pCAT079
FEATURES             Location/Qualifiers
     source          1..7909
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     rep_origin      1..589
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     490..509
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     promoter        651..899
                     /label=U6 promoter
                     /note="RNA polymerase III promoter for human U6 snRNA 
                     (Domitrovich & Kunkel, 2003)"
     primer_bind     651..671
                     /label=hU6-F
                     /note="Human U6 promoter, forward primer"
     primer_bind     822..841
                     /label=LKO.1 5'
                     /note="Human U6 promoter, forward primer"
     enhancer        1033..1318
                     /label=CMV enhancer
                     /note="human cytomegalovirus immediate early enhancer; 
                     contains an 18-bp deletion relative to the standard CMV 
                     enhancer"
     promoter        1320..1597
                     /label=chicken beta-actin promoter
     intron          1598..1826
                     /label=hybrid intron
                     /note="hybrid between chicken beta-actin (CBA) and minute 
                     virus of mice (MMV) introns (Gray et al., 2011)"
     regulatory      1838..1847
                     /label=Kozak sequence
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
                     /regulatory_class="other"
     CDS             1850..1870
                     /codon_start=1
                     /product="nuclear localization signal of SV40 (simian virus
                     40) large T antigen"
                     /label=SV40 NLS
                     /translation="PKKKRKV"
     CDS             4835..4855
                     /codon_start=1
                     /product="nuclear localization signal of SV40 (simian virus
                     40) large T antigen"
                     /label=SV40 NLS
                     /translation="PKKKRKV"
     CDS             4856..4903
                     /codon_start=1
                     /product="two tandem FLAG(R) epitope tags"
                     /label=2xFLAG
                     /translation="DYKDDDDKDYKDDDDK"
     CDS             4913..4969
                     /codon_start=1
                     /product="2A peptide from porcine teschovirus-1 
                     polyprotein"
                     /label=P2A
                     /note="Eukaryotic ribosomes fail to insert a peptide bond 
                     between the Gly and Pro residues, yielding separate 
                     polypeptides."
                     /translation="ATNFSLLKQAGDVEENPGP"
     CDS             4970..5566
                     /codon_start=1
                     /gene="pac from Streptomyces alboniger"
                     /product="puromycin N-acetyltransferase"
                     /label=PuroR
                     /note="confers resistance to puromycin"
                     /translation="TEYKPTVRLATRDDVPRAVRTLAAAFADYPATRHTVDPDRHIERV
                     TELQELFLTRVGLDIGKVWVADDGAAVAVWTTPESVEAGAVFAEIGPRMAELSGSRLAA
                     QQQMEGLLAPHRPKEPAWFLATVGVSPDHQGKGLGSAVVLPGVEAAERAGVPAFLETSA
                     PRNLPFYERLGFTVTADVEVPEGPRTWCMTRKPGA"
     primer_bind     5463..5483
                     /label=Puro-F
                     /note="Puromycin resistance gene, forward primer"
     primer_bind     complement(5600..5617)
                     /label=BGH-rev
                     /note="Bovine growth hormone terminator, reverse primer. 
                     Also called BGH reverse"
     polyA_signal    5606..5813
                     /label=bGH poly(A) signal
                     /note="bovine growth hormone polyadenylation signal"
     repeat_region   5822..5962
                     /label=AAV2 ITR
                     /note="inverted terminal repeat of adeno-associated virus 
                     serotype 2"
     repeat_region   5822..5951
                     /label=AAV2 ITR
     rep_origin      6037..6492
                     /direction=RIGHT
                     /label=f1 ori
                     /note="f1 bacteriophage origin of replication; arrow 
                     indicates direction of (+) strand synthesis"
     primer_bind     complement(6124..6143)
                     /label=F1ori-R
                     /note="F1 origin, reverse primer"
     primer_bind     6334..6355
                     /label=F1ori-F
                     /note="F1 origin, forward primer"
     primer_bind     complement(6509..6528)
                     /label=pRS-marker
                     /note="pRS vectors, use to sequence yeast selectable 
                     marker"
     primer_bind     6628..6650
                     /label=pGEX 3'
                     /note="pGEX vectors, reverse primer"
     primer_bind     complement(6688..6706)
                     /label=pBRforEco
                     /note="pBR322 vectors, upsteam of EcoRI site, forward 
                     primer"
     promoter        6774..6878
                     /gene="bla"
                     /label=AmpR promoter
     CDS             join(6879..6947,6948..7739)
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     complement(7097..7116)
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
ORIGIN
        1 ttgagatcct ttttttctgc gcgtaatctg ctgcttgcaa acaaaaaaac caccgctacc
       61 agcggtggtt tgtttgccgg atcaagagct accaactctt tttccgaagg taactggctt
      121 cagcagagcg cagataccaa atactgtcct tctagtgtag ccgtagttag gccaccactt
      181 caagaactct gtagcaccgc ctacatacct cgctctgcta atcctgttac cagtggctgc
      241 tgccagtggc gataagtcgt gtcttaccgg gttggactca agacgatagt taccggataa
      301 ggcgcagcgg tcgggctgaa cggggggttc gtgcacacag cccagcttgg agcgaacgac
      361 ctacaccgaa ctgagatacc tacagcgtga gctatgagaa agcgccacgc ttcccgaagg
      421 gagaaaggcg gacaggtatc cggtaagcgg cagggtcgga acaggagagc gcacgaggga
      481 gcttccaggg ggaaacgcct ggtatcttta tagtcctgtc gggtttcgcc acctctgact
      541 tgagcgtcga tttttgtgat gctcgtcagg ggggcggagc ctatggaaaa acgccagcaa
      601 cgcggccttt ttacggttcc tggccttttg ctggcctttt gctcacatgt gagggcctat
      661 ttcccatgat tccttcatat ttgcatatac gatacaaggc tgttagagag ataattggaa
      721 ttaatttgac tgtaaacaca aagatattag tacaaaatac gtgacgtaga aagtaataat
      781 ttcttgggta gtttgcagtt ttaaaattat gttttaaaat ggactatcat atgcttaccg
      841 taacttgaaa gtatttcgat ttcttggctt tatatatctt gtggaaagga cgaaacaccg
      901 gcgcttttat ctcattactt tgagagccat caccagcgac tatgtcgtat gggtaaagcg
      961 cttatttatc ggagaaaccg ataaataaga agcatcaaag gggtcttcga gaagaccctt
     1021 ttttttggta cccgttacat aacttacggt aaatggcccg cctggctgac cgcccaacga
     1081 cccccgccca ttgacgtcaa tagtaacgcc aatagggact ttccattgac gtcaatgggt
     1141 ggagtattta cggtaaactg cccacttggc agtacatcaa gtgtatcata tgccaagtac
     1201 gccccctatt gacgtcaatg acggtaaatg gcccgcctgg cattgtgccc agtacatgac
     1261 cttatgggac tttcctactt ggcagtacat ctacgtatta gtcatcgcta ttaccatggt
     1321 cgaggtgagc cccacgttct gcttcactct ccccatctcc cccccctccc cacccccaat
     1381 tttgtattta tttatttttt aattattttg tgcagcgatg ggggcggggg gggggggggg
     1441 gcgcgcgcca ggcggggcgg ggcggggcga ggggcggggc ggggcgaggc ggagaggtgc
     1501 ggcggcagcc aatcagagcg gcgcgctccg aaagtttcct tttatggcga ggcggcggcg
     1561 gcggcggccc tataaaaagc gaagcgcgcg gcgggcggga gtcgctgcga cgctgccttc
     1621 gccccgtgcc ccgctccgcc gccgcctcgc gccgcccgcc ccggctctga ctgaccgcgt
     1681 tactcccaca ggtgagcggg cgggacggcc cttctcctcc gggctgtaat tagctgagca
     1741 agaggtaagg gtttaaggga tggttggttg gtggggtatt aatgtttaat tacctggagc
     1801 acctgcctga aatcactttt tttcaggttg gaccggtgcc accatggccc caaagaagaa
     1861 gcggaaggtc agcgaaaaga gaatcaacaa gatcaggaag aagctgagcg ccgacaacgc
     1921 caccaagcct gtgtctagga gtggccccat gaaaaccctg ctcgtcagag tgatgaccga
     1981 cgacctgaag aagagactgg aaaagaggag gaagaaaccc gaagtgatgc cccaagtgat
     2041 cagcaacaac gccgccaaca acctgagaat gctgctggac gactacacca agatgaagga
     2101 agccatcctg caggtctact ggcaagagtt caaggacgac cacgtgggcc tgatgtgcaa
     2161 gtttgcccag cctgccagca agaagatcga ccagaacaag ctgaagcccg agatggacga
     2221 gaagggcaat ctgaccacag ccggctttgc ctgctctcag tgtggccagc ctctgttcgt
     2281 gtacaagctg gaacaggtgt ccgagaaagg caaggcctac accaactact tcggcagatg
     2341 taacgtggcc gagcacgaga agctgattct gctggcccag ctgaaacctg agaaggactc
     2401 tgatgaggcc gtgacctaca gcctgggcaa gtttggacag agagccctgg acttctacag
     2461 catccacgtg accaaagaaa gcacacaccc cgtgaagccc ctggctcaga tcgccggcaa
     2521 tagatacgcc tctggacctg tgggcaaagc cctgtccgat gcctgcatgg gaacaatcgc
     2581 cagcttcctg agcaagtacc aggacatcat catcgagcac cagaaggtgg tcaagggcaa
     2641 ccagaagaga ctggaaagcc tgagggagct ggccggcaaa gagaacctgg aataccccag
     2701 cgtgaccctg cctcctcagc ctcacacaaa agaaggcgtg gacgcctaca acgaagtgat
     2761 cgccagagtg agaatgtggg tcaacctgaa cctgtggcag aagctgaaac tgtccaggga
     2821 cgacgccaag cctctgctga gactgaaggg cttccctagc ttccccgtgg tggaaagaag
     2881 ggagaatgag gtggactggt ggaacaccat caacgaagtc aagaaactga tcgatgccaa
     2941 gagagacatg ggcagagtgt tttggagcgg agtgaccgcc gagaagagaa acaccatcct
     3001 ggaaggctac aactacctgc ctaacgagaa cgaccacaag aagagagagg gcagcctgga
     3061 aaaccctaag aagcccgcca agagacagtt cggcgacctg ctgctgtacc tggagaagaa
     3121 gtatgccggc gactggggca aagtgttcga tgaggcctgg gagagaatcg acaagaagat
     3181 tgccggcctg accagccaca tcgagagaga ggaagccaga aacgccgagg acgcccagtc
     3241 taaagccgtg ctgacagatt ggctgagagc caaggccagc ttcgtgctgg aaaggctgaa
     3301 agaaatggat gagaaagagt tctacgcctg cgagatccag ctgcagaagt ggtacgggga
     3361 cctgagaggc aatccctttg ccgtggaagc cgagaacaga gtggtggaca tcagcggctt
     3421 tagcatcggc tctgacggcc actccatcca gtacaggaac ctgctggcct ggaagtacct
     3481 ggaaaatggc aagagagagt tctacctgct gatgaactac ggcaagaagg gcagaatcag
     3541 attcaccgac ggcaccgaca tcaagaaaag cggcaagtgg cagggcctgc tgtatggcgg
     3601 cggaaaggcc aaagtgatcg acctgacctt cgatcccgac gacgagcagc tgatcattct
     3661 gcctctggcc ttcggcacca gacagggcag agagttcatc tggaacgatc tgctgtccct
     3721 ggaaaccggc ctgatcaagc tggccaacgg cagggtgatc gagaaaacca tctacaacaa
     3781 gaaaatcggc agagatgagc ccgcactgtt tgtggccctg acctttgaga ggagagaagt
     3841 ggtcgatccc agcaacatca agcccgtgaa cctgatcgga gtggacagag gcgagaatat
     3901 ccctgccgtg attgccctga cagaccctga gggatgtccc ctgcctgagt ttaaggatag
     3961 ctctggcggc cctaccgaca tcctgagaat cggcgagggc tacaaagaga agcagagagc
     4021 catccaggcc gccaaagagg tggaacagag aagagccggc ggatacagca gaaagttcgc
     4081 cagcaagtcc agaaacctgg ccgatgacat ggtcaggaac agcgccaggg acctgttcta
     4141 ccacgccgtg acacatgatg ccgtgctggt gttcgagaac ctgtcaagag gcttcggcag
     4201 acagggaaaa agaaccttca tgaccgagag acagtacacg aagatggaag attggctcac
     4261 cgccaaactg gcctacgagg gcctgacaag caagacctac ctgtccaaga cactggccca
     4321 gtacacctcc aagacctgct ccaattgcgg cttcaccatc accaccgccg actacgatgg
     4381 aatgctcgtg agactgaaga aaacctccga cggctgggcc accacactga acaacaaaga
     4441 gctgaaagcc gagggccaga tcacctacta caacagatac aagaggcaga ccgtcgagaa
     4501 agagctgtcc gccgaactcg acagactgag cgaggaatcc ggcaacaacg acatcagcaa
     4561 gtggaccaag ggacgcagag atgaggccct gttcctgctg aagaagaggt tcagccacag
     4621 acctgtgcaa gagcagtttg tgtgcctgga ttgcggccac gaagtgcacg cagatgaaca
     4681 ggccgctctg aatatcgcca gaagctggct gttcctgaac agcaacagca ccgagttcaa
     4741 gagctacaag agcggcaagc agcctttcgt tggagcctgg caggccttct acaagagaag
     4801 gctcaaagaa gtgtggaagc ccaacgccac tagtccaaaa aagaagagaa aggtagatta
     4861 caaagatgac gatgacaaag actacaagga tgatgatgat aagggatccg gcgcaacaaa
     4921 cttctctctg ctgaaacaag ccggagatgt cgaagagaat cctggaccga ccgagtacaa
     4981 gcccacggtg cgcctcgcca cccgcgacga cgtccccagg gccgtacgca ccctcgccgc
     5041 cgcgttcgcc gactaccccg ccacgcgcca caccgtcgat ccggaccgcc acatcgagcg
     5101 ggtcaccgag ctgcaagaac tcttcctcac gcgcgtcggg ctcgacatcg gcaaggtgtg
     5161 ggtcgcggac gacggcgccg cggtggcggt ctggaccacg ccggagagcg tcgaagcggg
     5221 ggcggtgttc gccgagatcg gcccgcgcat ggccgagttg agcggttccc ggctggccgc
     5281 gcagcaacag atggaaggcc tcctggcgcc gcaccggccc aaggagcccg cgtggttcct
     5341 ggccaccgtc ggagtctcgc ccgaccacca gggcaagggt ctgggcagcg ccgtcgtgct
     5401 ccccggagtg gaggcggccg agcgcgccgg ggtgcccgcc ttcctggaga cctccgcgcc
     5461 ccgcaacctc cccttctacg agcggctcgg cttcaccgtc accgccgacg tcgaggtgcc
     5521 cgaaggaccg cgcacctggt gcatgacccg caagcccggt gcctgaacgc gttaagaatt
     5581 cctagagctc gctgatcagc ctcgactgtg ccttctagtt gccagccatc tgttgtttgc
     5641 ccctcccccg tgccttcctt gaccctggaa ggtgccactc ccactgtcct ttcctaataa
     5701 aatgaggaaa ttgcatcgca ttgtctgagt aggtgtcatt ctattctggg gggtggggtg
     5761 gggcaggaca gcaaggggga ggattgggaa gagaatagca ggcatgctgg ggagcggccg
     5821 caggaacccc tagtgatgga gttggccact ccctctctgc gcgctcgctc gctcactgag
     5881 gccgggcgac caaaggtcgc ccgacgcccg ggctttgccc gggcggcctc agtgagcgag
     5941 cgagcgcgca gctgcctgca ggggcgcctg atgcggtatt ttctccttac gcatctgtgc
     6001 ggtatttcac accgcatacg tcaaagcaac catagtacgc gccctgtagc ggcgcattaa
     6061 gcgcggcggg tgtggtggtt acgcgcagcg tgaccgctac acttgccagc gccctagcgc
     6121 ccgctccttt cgctttcttc ccttcctttc tcgccacgtt cgccggcttt ccccgtcaag
     6181 ctctaaatcg ggggctccct ttagggttcc gatttagtgc tttacggcac ctcgacccca
     6241 aaaaacttga tttgggtgat ggttcacgta gtgggccatc gccctgatag acggtttttc
     6301 gccctttgac gttggagtcc acgttcttta atagtggact cttgttccaa actggaacaa
     6361 cactcaaccc tatctcgggc tattcttttg atttataagg gattttgccg atttcggcct
     6421 attggttaaa aaatgagctg atttaacaaa aatttaacgc gaattttaac aaaatattaa
     6481 cgtttacaat tttatggtgc actctcagta caatctgctc tgatgccgca tagttaagcc
     6541 agccccgaca cccgccaaca cccgctgacg cgccctgacg ggcttgtctg ctcccggcat
     6601 ccgcttacag acaagctgtg accgtctccg ggagctgcat gtgtcagagg ttttcaccgt
     6661 catcaccgaa acgcgcgaga cgaaagggcc tcgtgatacg cctattttta taggttaatg
     6721 tcatgataat aatggtttct tagacgtcag gtggcacttt tcggggaaat gtgcgcggaa
     6781 cccctatttg tttatttttc taaatacatt caaatatgta tccgctcatg agacaataac
     6841 cctgataaat gcttcaataa tattgaaaaa ggaagagtat gagtattcaa catttccgtg
     6901 tcgcccttat tccctttttt gcggcatttt gccttcctgt ttttgctcac ccagaaacgc
     6961 tggtgaaagt aaaagatgct gaagatcagt tgggtgcacg agtgggttac atcgaactgg
     7021 atctcaacag cggtaagatc cttgagagtt ttcgccccga agaacgtttt ccaatgatga
     7081 gcacttttaa agttctgcta tgtggcgcgg tattatcccg tattgacgcc gggcaagagc
     7141 aactcggtcg ccgcatacac tattctcaga atgacttggt tgagtactca ccagtcacag
     7201 aaaagcatct tacggatggc atgacagtaa gagaattatg cagtgctgcc ataaccatga
     7261 gtgataacac tgcggccaac ttacttctga caacgatcgg aggaccgaag gagctaaccg
     7321 cttttttgca caacatgggg gatcatgtaa ctcgccttga tcgttgggaa ccggagctga
     7381 atgaagccat accaaacgac gagcgtgaca ccacgatgcc tgtagcaatg gcaacaacgt
     7441 tgcgcaaact attaactggc gaactactta ctctagcttc ccggcaacaa ttaatagact
     7501 ggatggaggc ggataaagtt gcaggaccac ttctgcgctc ggcccttccg gctggctggt
     7561 ttattgctga taaatctgga gccggtgagc gtggaagccg cggtatcatt gcagcactgg
     7621 ggccagatgg taagccctcc cgtatcgtag ttatctacac gacggggagt caggcaacta
     7681 tggatgaacg aaatagacag atcgctgaga taggtgcctc actgattaag cattggtaac
     7741 tgtcagacca agtttactca tatatacttt agattgattt aaaacttcat ttttaattta
     7801 aaaggatcta ggtgaagatc ctttttgata atctcatgac caaaatccct taacgtgagt
     7861 tttcgttcca ctgagcgtca gaccccgtag aaaagatcaa aggatcttc
//
