LOCUS       sequence-384094-        7175 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  AAV vector to drive the Flp-dependent expression of mScarlet-Gphn 
            (isoform C4c) under the control of human Synapsin promoter.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 7175)
  AUTHORS   Liebsch F, Eggersmann FR, Merkler Y, Kloppenburg P, Schwarz G
  TITLE     Automated Image Analysis Reveals Different Localization of Synaptic 
            Gephyrin C4 Splice Variants.
  JOURNAL   eNeuro. 2023 Jan 4;10(1):ENEURO.0102-22.2022. doi: 
            10.1523/ENEURO.0102-22.2022. Print 2023 Jan.
  PUBMED    36543537
REFERENCE   2  (bases 1 to 7175)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; doi: 
            "10.1523/ENEURO.0102-22.2022"; journalName: "eNeuro"; date: 
            "2023-01-4- 4"; volume: "10"; issue: "1"; pages: 
            "ENEURO.0102-22.2022"
COMMENT     Sequence Label: pAAV-hSyn-fDIO-mScarlet-Gphn_C4c
FEATURES             Location/Qualifiers
     source          1..7175
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     primer_bind     40..61
                     /label=F1ori-F
                     /note="F1 origin, forward primer"
     primer_bind     complement(215..234)
                     /label=pRS-marker
                     /note="pRS vectors, use to sequence yeast selectable 
                     marker"
     primer_bind     334..356
                     /label=pGEX 3'
                     /note="pGEX vectors, reverse primer"
     primer_bind     complement(394..412)
                     /label=pBRforEco
                     /note="pBR322 vectors, upsteam of EcoRI site, forward 
                     primer"
     promoter        480..584
                     /gene="bla"
                     /label=AmpR promoter
     CDS             join(585..653,654..1445)
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     rep_origin      1616..2204
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     2105..2124
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     repeat_region   2266..2395
                     /label=AAV2 ITR (alternate)
                     /note="Functional equivalent of wild-type AAV2 ITR"
     promoter        2440..2887
                     /label=hSyn promoter
                     /note="human synapsin I promoter; confers neuron-specific 
                     expression (Kugler et al., 2003)"
     protein_bind    2925..2958
                     /label=FRT (minimal)
                     /bound_moiety="FLP recombinase from the Saccharomyces 
                     cerevisiae 2u plasmid"
                     /note="supports FLP-mediated excision but not integration 
                     (Turan and Bode, 2011)"
     CDS             complement(5328..6023)
                     /codon_start=1
                     /product="bright monomeric red fluorescent protein evolved 
                     from a synthetic template (Bindels et al., 2016)"
                     /label=mScarlet
                     /translation="MVSKGEAVIKEFMRFKVHMEGSMNGHEFEIEGEGEGRPYEGTQTA
                     KLKVTKGGPLPFSWDILSPQFMYGSRAFTKHPADIPDYYKQSFPEGFKWERVMNFEDGG
                     AVTVTQDTSLEDGTLIYKVKLRGTNFPPDGPVMQKKTMGWEASTERLYPEDGVLKGDIK
                     MALRLKDGGRYLADFKTTYKAKKPVQMPGAYNVDRKLDITSHNEDYTVVEQYERSEGRH
                     STGGMDELYK"
     primer_bind     complement(5603..5622)
                     /label=mCherry-F
                     /note="mCherry, forward primer"
     primer_bind     5872..5890
                     /label=mCherry-R
                     /note="mCherry, reverse primer"
     regulatory      6020..6029
                     /label=Kozak sequence
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
                     /regulatory_class="other"
     protein_bind    complement(6036..6069)
                     /label=FRT (minimal)
                     /bound_moiety="FLP recombinase from the Saccharomyces 
                     cerevisiae 2u plasmid"
                     /note="supports FLP-mediated excision but not integration 
                     (Turan and Bode, 2011)"
     polyA_signal    6187..6663
                     /label=hGH poly(A) signal
                     /note="human growth hormone polyadenylation signal"
     primer_bind     complement(6386..6405)
                     /label=hGH-PA-R
                     /note="Human growth hormone terminator, reverse primer"
     repeat_region   6703..6843
                     /label=AAV2 ITR
                     /note="inverted terminal repeat of adeno-associated virus 
                     serotype 2"
     repeat_region   6703..6832
                     /label=AAV2 ITR
     rep_origin      join(6918..7175,1..198)
                     /direction=RIGHT
                     /label=f1 ori
                     /note="f1 bacteriophage origin of replication; arrow 
                     indicates direction of (+) strand synthesis"
     primer_bind     complement(7005..7024)
                     /label=F1ori-R
                     /note="F1 origin, reverse primer"
ORIGIN
        1 tttttcgccc tttgacgttg gagtccacgt tctttaatag tggactcttg ttccaaactg
       61 gaacaacact caactctatc tcgggctatt cttttgattt ataagggatt ttgccgattt
      121 cggtctattg gttaaaaaat gagctgattt aacaaaaatt taacgcgaat tttaacaaaa
      181 tattaacgtt tacaatttta tggtgcactc tcagtacaat ctgctctgat gccgcatagt
      241 taagccagcc ccgacacccg ccaacacccg ctgacgcgcc ctgacgggct tgtctgctcc
      301 cggcatccgc ttacagacaa gctgtgaccg tctccgggag ctgcatgtgt cagaggtttt
      361 caccgtcatc accgaaacgc gcgagacgaa agggcctcgt gatacgccta tttttatagg
      421 ttaatgtcat gataataatg gtttcttaga cgtcaggtgg cacttttcgg ggaaatgtgc
      481 gcggaacccc tatttgttta tttttctaaa tacattcaaa tatgtatccg ctcatgagac
      541 aataaccctg ataaatgctt caataatatt gaaaaaggaa gagtatgagt attcaacatt
      601 tccgtgtcgc ccttattccc ttttttgcgg cattttgcct tcctgttttt gctcacccag
      661 aaacgctggt gaaagtaaaa gatgctgaag atcagttggg tgcacgagtg ggttacatcg
      721 aactggatct caacagcggt aagatccttg agagttttcg ccccgaagaa cgttttccaa
      781 tgatgagcac ttttaaagtt ctgctatgtg gcgcggtatt atcccgtatt gacgccgggc
      841 aagagcaact cggtcgccgc atacactatt ctcagaatga cttggttgag tactcaccag
      901 tcacagaaaa gcatcttacg gatggcatga cagtaagaga attatgcagt gctgccataa
      961 ccatgagtga taacactgcg gccaacttac ttctgacaac gatcggagga ccgaaggagc
     1021 taaccgcttt tttgcacaac atgggggatc atgtaactcg ccttgatcgt tgggaaccgg
     1081 agctgaatga agccatacca aacgacgagc gtgacaccac gatgcctgta gcaatggcaa
     1141 caacgttgcg caaactatta actggcgaac tacttactct agcttcccgg caacaattaa
     1201 tagactggat ggaggcggat aaagttgcag gaccacttct gcgctcggcc cttccggctg
     1261 gctggtttat tgctgataaa tctggagccg gtgagcgtgg gtctcgcggt atcattgcag
     1321 cactggggcc agatggtaag ccctcccgta tcgtagttat ctacacgacg gggagtcagg
     1381 caactatgga tgaacgaaat agacagatcg ctgagatagg tgcctcactg attaagcatt
     1441 ggtaactgtc agaccaagtt tactcatata tactttagat tgatttaaaa cttcattttt
     1501 aatttaaaag gatctaggtg aagatccttt ttgataatct catgaccaaa atcccttaac
     1561 gtgagttttc gttccactga gcgtcagacc ccgtagaaaa gatcaaagga tcttcttgag
     1621 atcctttttt tctgcgcgta atctgctgct tgcaaacaaa aaaaccaccg ctaccagcgg
     1681 tggtttgttt gccggatcaa gagctaccaa ctctttttcc gaaggtaact ggcttcagca
     1741 gagcgcagat accaaatact gttcttctag tgtagccgta gttaggccac cacttcaaga
     1801 actctgtagc accgcctaca tacctcgctc tgctaatcct gttaccagtg gctgctgcca
     1861 gtggcgataa gtcgtgtctt accgggttgg actcaagacg atagttaccg gataaggcgc
     1921 agcggtcggg ctgaacgggg ggttcgtgca cacagcccag cttggagcga acgacctaca
     1981 ccgaactgag atacctacag cgtgagctat gagaaagcgc cacgcttccc gaagggagaa
     2041 aggcggacag gtatccggta agcggcaggg tcggaacagg agagcgcacg agggagcttc
     2101 cagggggaaa cgcctggtat ctttatagtc ctgtcgggtt tcgccacctc tgacttgagc
     2161 gtcgattttt gtgatgctcg tcaggggggc ggagcctatg gaaaaacgcc agcaacgcgg
     2221 cctttttacg gttcctggcc ttttgctggc cttttgctca catgtcctgc aggcagctgc
     2281 gcgctcgctc gctcactgag gccgcccggg cgtcgggcga cctttggtcg cccggcctca
     2341 gtgagcgagc gagcgcgcag agagggagtg gccaactcca tcactagggg ttcctgcggc
     2401 cgcacgcgtg tgtctagact gcagagggcc ctgcgtatga gtgcaagtgg gttttaggac
     2461 caggatgagg cggggtgggg gtgcctacct gacgaccgac cccgacccac tggacaagca
     2521 cccaaccccc attccccaaa ttgcgcatcc cctatcagag agggggaggg gaaacaggat
     2581 gcggcgaggc gcgtgcgcac tgccagcttc agcaccgcgg acagtgcctt cgcccccgcc
     2641 tggcggcgcg cgccaccgcc gcctcagcac tgaaggcgcg ctgacgtcac tcgccggtcc
     2701 cccgcaaact ccccttcccg gccaccttgg tcgcgtccgc gccgccgccg gcccagccgg
     2761 accgcaccac gcgaggcgcg agataggggg gcacgggcgc gaccatctgc gctgcggcgc
     2821 cggcgactca gcgctgcctc agtctgcggt gggcagcgga ggagtcgtgt cgtgcctgag
     2881 agcgcagtcg agaaggtacc ggatcctcta gagtcgactc cggagaagtt cctattctct
     2941 agaaagtata ggaacttcgc agaatggtag ctggattgta gctgctatta gcaatatgaa
     3001 acctcttaga agttcctatt cttcaaaagg tataggaact tcggcgcgcc tcatagccgt
     3061 ccgatgacca tgacgtccac cacctcgcct ttgtgaagtt ccacatactg ctctgtcttt
     3121 ggaggtagca tcagcaatcc attggcactg cgcatgctca tcagacggct gctcatctga
     3181 ttacctgtac tctgggccca gggcagtggt tcttggtgat gccaagtcag tatacaccgg
     3241 tggtattctg ggcgagggtc cagctttacg tcacatgata acctagcttt gatgatggtt
     3301 ggccgaggat ccaagatacc ctgcattttt ctcagtgcgg gtacaacaaa gaggttgcag
     3361 gtgaccacag ctgatacagg attccctggt agtgcaaaaa taatttttct tacaccatca
     3421 atatccaaag ttgcaaatgt tgttggcaag cctggcttca taaaaaccct gccaaaatgg
     3481 atctgagcat gaagatcgat gtccagcacc tgcttgagat agtccttttc ccccatggat
     3541 acacctcctg acgtgatgat gacatcagca cggctgatac cctcattcaa ggcattgagt
     3601 aagtcatctg ggttgtctcc tacaattccc aagttgattg ttgggtaacc atgttcctga
     3661 attgttgcta gaagtgttga tcgattgctg tcccgaatct ttcctggtaa gaggtcatct
     3721 tcaggattta gtagctcatt ccctgttgac ataacggcaa ccactggaaa cttattaact
     3781 tcaacttctg tgacacctac agttgcaagg agaccaattt ctgaagggcc catatgggtt
     3841 ccttttgcca aaacacactc ccctctttta atgtcgtggc cgatgggtct gatgtcttgg
     3901 cctggccgag cttgcaccag aattcgcact tcaagttctt cagtaccatc atctgattcc
     3961 ctgatgagtt cagtatcttc aacttgcact actgcatcag caccgcaggg gattggagca
     4021 cctgttgtaa cccgcatcac ttgtccgggc attactgtct gagttggctg ttcaccagct
     4081 tgggattccc caatgatgaa acgatctcct ggaccatcag cagctcgaac agcatagcca
     4141 tcttttactg atgctgggaa tgggggtagg ttgtcttttg catacacatc ttgagcaagg
     4201 actcgcccca ttccatctcg gtaattgatg atttctgtac caagcaccgg agtcatctcc
     4261 agaactgtaa tgaaggcttt gtccatagac gtcagaggaa aaggagacat gcgatgtctt
     4321 ctagccacct tggtgatatc tacagcactg tgactggctc ttagaatgtt ctccttgctg
     4381 ctgcacctgg actggacctc agatacacta taggtagatg agcacgaggg aagccgagct
     4441 tttggtgttg gacaagaagc tgtagagagg cgagatgtag cctgggcacg gggcgactct
     4501 gaaggagtag tgctaaggga ggctgtgtct cgtgggagca cctgaacgcc acgagaaatg
     4561 atggagtctg gaatctttgc agcaagagct gctgcagtaa tatgtgatga ggaactatct
     4621 tctgtcgaag ctacaccact gtctttcttt tcttcttcct cctcttcaca ctgaactcct
     4681 ttgtcttctg tctgcttatg tgggctagtt gtaggaggtg gagaaagagg aggtggtggg
     4741 gaaggtaaat cttcaagttc atcatgcacc tcctttactt ttacaatggc atcacgtaaa
     4801 aggtcaatgg catgaggtag agctggcagt atgaactgaa agcattcctg agatcctttc
     4861 ttgctaccag gcaggttaat tatcagagtt ttccctctta ttccacacac tggtctagag
     4921 agcatgccca gaggtgtaac attaagtgat cccatcagca ttgccagggc catccctggc
     4981 gcttcccgtt ctattacttc ttttgtggcc tctggagtga catctcgtgg tgcaaaccct
     5041 gttccgccag ttgttaatat caaattaagt tccttctcat cacaccagtc tatgagtgtt
     5101 tccttgattt cttctatttc atctggtact atcttgtatg ctgatatagt cccacccaac
     5161 aaagaaggat cctggacgag atcttttaga tttatcccac tgcggtcttc tgcaagattc
     5221 ctgaagcagc tatcactcac tgtgaggact ccgacacgga tttgatggtc gtggtttgtg
     5281 aggatcattc cctcggtcgc catgctcgag atctgagtcc ggccggactt gtacagctcg
     5341 tccatgccgc cggtggagtg gcggccctcg gagcgttcgt actgttccac cacggtgtag
     5401 tcctcgttgt gggaggtgat gtccaacttg cggtccacgt tgtaggcgcc gggcatctgc
     5461 acgggcttct tggccttgta ggtggtcttg aagtccgcca ggtagcgccc gccgtccttc
     5521 aggcgcaggg ccatcttaat gtcgcccttc agcacgccgt cctcggggta caaccgctcg
     5581 gtggacgctt cccagcccat tgtcttcttc tgcattacgg ggccgtcagg agggaagttg
     5641 gtgccgcgga gcttcacctt gtagatcagg gtgccgtcct ccagggaggt gtcctgggtc
     5701 acggtcacgg cgccgccgtc ctcgaagttc atcacgcgct cccacttgaa gccctcgggg
     5761 aaggactgct tatagtagtc ggggatgtcg gcggggtgct tggtgaaggc cctggagccg
     5821 tacatgaact gaggggacag gatgtcccag gagaagggca gggggccacc cttggtcacc
     5881 ttcagcttgg cggtctgggt gccctcgtag gggcggccct cgccctcgcc ctcgatctcg
     5941 aactcgtggc cgttcatgga gccctccatg tgcaccttga accgcatgaa ctccttgatc
     6001 actgcctcgc ccttgctcac catggtggcg ctagcgaagt tcctatactt tctagagaat
     6061 aggaacttct tgccttaacc cagaaattat cactgttatt ctttagaatg gtgcaaagag
     6121 aagttcctat accttttgaa gaataggaac ttcgaattcg atatcaagct tatcgatgag
     6181 atctacgggt ggcatccctg tgacccctcc ccagtgcctc tcctggccct ggaagttgcc
     6241 actccagtgc ccaccagcct tgtcctaata aaattaagtt gcatcatttt gtctgactag
     6301 gtgtccttct ataatattat ggggtggagg ggggtggtat ggagcaaggg gcaagttggg
     6361 aagacaacct gtagggcctg cggggtctat tgggaaccaa gctggagtgc agtggcacaa
     6421 tcttggctca ctgcaatctc cgcctcctgg gttcaagcga ttctcctgcc tcagcctccc
     6481 gagttgttgg gattccaggc atgcatgacc aggctcagct aatttttgtt tttttggtag
     6541 agacggggtt tcaccatatt ggccaggctg gtctccaact cctaatctca ggtgatctac
     6601 ccaccttggc ctcccaaatt gctgggatta caggcgtgaa ccactgctcc cttccctgtc
     6661 cttctgattt tgtaggtaac cacgtgcgga ccgagcggcc gcaggaaccc ctagtgatgg
     6721 agttggccac tccctctctg cgcgctcgct cgctcactga ggccgggcga ccaaaggtcg
     6781 cccgacgccc gggctttgcc cgggcggcct cagtgagcga gcgagcgcgc agctgcctgc
     6841 aggggcgcct gatgcggtat tttctcctta cgcatctgtg cggtatttca caccgcatac
     6901 gtcaaagcaa ccatagtacg cgccctgtag cggcgcatta agcgcggcgg gtgtggtggt
     6961 tacgcgcagc gtgaccgcta cacttgccag cgccttagcg cccgctcctt tcgctttctt
     7021 cccttccttt ctcgccacgt tcgccggctt tccccgtcaa gctctaaatc gggggctccc
     7081 tttagggttc cgatttagtg ctttacggca cctcgacccc aaaaaacttg atttgggtga
     7141 tggttcacgt agtgggccat cgccctgata gacgg
//
