LOCUS       sequence-394848-        5176 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  Contains PLP1 promoter.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 5176)
  AUTHORS   Calabria J, Wang L, Rast-Somssich MI, Chen HW, Watt M, Persson S, 
            Andersen TG, Idnurm A, Somssich M
  TITLE     Resolving spatially distinct phytohormone response zones in 
            Arabidopsis thaliana roots colonized by Fusarium oxysporum.
  JOURNAL   J Exp Bot. 2025 Jan 17:erae516. doi: 10.1093/jxb/erae516.
  PUBMED    39823275
REFERENCE   2  (bases 1 to 5176)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; journalName: "J Exp Bot. 
            2025 Jan 17:erae516. doi: 10.1093/jxb/erae516."
COMMENT     Sequence Label: pGG-PIP49
FEATURES             Location/Qualifiers
     source          1..5176
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     primer_bind     complement(10..28)
                     /label=pBRforEco
                     /note="pBR322 vectors, upsteam of EcoRI site, forward 
                     primer"
     promoter        96..200
                     /gene="bla"
                     /label=AmpR promoter
     CDS             join(201..269,270..1061)
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     complement(419..438)
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
     rep_origin      1232..1820
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     1721..1740
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     primer_bind     1974..1991
                     /label=L4440
                     /note="L4440 vector, forward primer"
     protein_bind    2108..2129
                     /label=CAP binding site
                     /bound_moiety="E. coli catabolite activator protein"
                     /note="CAP binding activates transcription in the presence 
                     of cAMP."
     promoter        join(2144..2149,2150..2167,2168..2174)
                     /label=lac promoter
                     /note="promoter for the E. coli lac operon"
     protein_bind    2182..2198
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     promoter        2212..2230
                     /label=SP6 promoter
                     /note="promoter for bacteriophage SP6 RNA polymerase"
     primer_bind     2212..2229
                     /label=SP6
                     /note="SP6 promoter, forward primer"
     CDS             3353..3364
                     /codon_start=1
                     /product="Factor Xa recognition and cleavage site"
                     /label=Factor Xa site
                     /translation="IEGR"
     primer_bind     complement(4762..4781)
                     /label=T7
                     /note="T7 promoter, forward primer"
     promoter        complement(4763..4781)
                     /label=T7 promoter
                     /note="promoter for bacteriophage T7 RNA polymerase"
     primer_bind     complement(4791..4813)
                     /label=M13/pUC Forward
                     /note="In lacZ gene"
     primer_bind     complement(5007..5026)
                     /label=pRS-marker
                     /note="pRS vectors, use to sequence yeast selectable 
                     marker"
     primer_bind     5126..5148
                     /label=pGEX 3'
                     /note="pGEX vectors, reverse primer"
ORIGIN
        1 gacgaaaggg cctcgtgata cgcctatttt tataggttaa tgtcatgata ataatggttt
       61 cttagacgtc aggtggcact tttcggggaa atgtgcgcgg aacccctatt tgtttatttt
      121 tctaaataca ttcaaatatg tatccgctca tgagacaata accctgataa atgcttcaat
      181 aatattgaaa aaggaagagt atgagtattc aacatttccg tgtcgccctt attccctttt
      241 ttgcggcatt ttgccttcct gtttttgctc acccagaaac gctggtgaaa gtaaaagatg
      301 ctgaagatca gttgggtgca cgagtgggtt acatcgaact ggatctcaac agcggtaaga
      361 tccttgagag ttttcgcccc gaagaacgtt ttccaatgat gagcactttt aaagttctgc
      421 tatgtggcgc ggtattatcc cgtattgacg ccgggcaaga gcaactcggt cgccgcatac
      481 actattctca gaatgacttg gttgagtact caccagtcac agaaaagcat cttacggatg
      541 gcatgacagt aagagaatta tgcagtgctg ccataaccat gagtgataac actgcggcca
      601 acttacttct gacaacgatc ggaggaccga aggagctaac cgcttttttg cacaacatgg
      661 gggatcatgt aactcgcctt gatcgttggg aaccggagct gaatgaagcc ataccaaacg
      721 acgagcgtga caccacgatg cctgtagcaa tggcaacaac gttgcgcaaa ctattaactg
      781 gcgaactact tactctagct tcccggcaac aattaataga ctggatggag gcggataaag
      841 ttgcaggacc acttctgcgc tcggcccttc cggctggctg gtttattgct gataaatctg
      901 gagccggtga gcgtggctct cgaggtatca ttgcagcact ggggccagat ggtaagccct
      961 cccgtatcgt agttatctac acgacgggga gtcaggcaac tatggatgaa cgaaatagac
     1021 agatcgctga gataggtgcc tcactgatta agcattggta actgtcagac caagtttact
     1081 catatatact ttagattgat ttaaaacttc atttttaatt taaaaggatc taggtgaaga
     1141 tcctttttga taatctcatg accaaaatcc cttaacgtga gttttcgttc cactgagcgt
     1201 cagaccccgt agaaaagatc aaaggatctt cttgagatcc tttttttctg cgcgtaatct
     1261 gctgcttgca aacaaaaaaa ccaccgctac cagcggtggt ttgtttgccg gatcaagagc
     1321 taccaactct ttttccgaag gtaactggct tcagcagagc gcagatacca aatactgttc
     1381 ttctagtgta gccgtagtta ggccaccact tcaagaactc tgtagcaccg cctacatacc
     1441 tcgctctgct aatcctgtta ccagtggctg ctgccagtgg cgataagtcg tgtcttaccg
     1501 ggttggactc aagacgatag ttaccggata aggcgcagcg gtcgggctga acggggggtt
     1561 cgtgcacaca gcccagcttg gagcgaacga cctacaccga actgagatac ctacagcgtg
     1621 agctatgaga aagcgccacg cttcccgaag ggagaaaggc ggacaggtat ccggtaagcg
     1681 gcagggtcgg aacaggagag cgcacgaggg agcttccagg gggaaacgcc tggtatcttt
     1741 atagtcctgt cgggtttcgc cacctctgac ttgagcgtcg atttttgtga tgctcgtcag
     1801 gggggcggag cctatggaaa aacgccagca acgcggcctt tttacggttc ctggcctttt
     1861 gctggccttt tgctcacatg ttctttcctg cgttatcccc tgattctgtg gataaccgta
     1921 ttaccgcctt tgagtgagct gataccgctc gccgcagccg aacgaccgag cgcagcgagt
     1981 cagtgagcga ggaagcggaa gagcgcccaa tacgcaaacc gcctctcccc gcgcgttggc
     2041 cgattcatta atgcagctgg cacgacaggt ttcccgactg gaaagcgggc agtgagcgca
     2101 acgcaattaa tgtgagttag ctcactcatt aggcacccca ggctttacac tttatgcttc
     2161 cggctcgtat gttgtgtgga attgtgagcg gataacaatt tcacacgagc tatttaggtg
     2221 acactataga agtgaagctt ggtctcaacc tctgatcatc tagcctcttc ccatcacatg
     2281 ccattaatgg acctatgcgg tgctgatagt aacgtataac catgacgacg tctgagactc
     2341 agaggatctt actctaacat aattaaaaac ataaacttgc actagtgaat ttgtaatttc
     2401 atataaggaa acattttgga gcaataaaca ttatatcctt ttttcctttc cctgtatatt
     2461 gccacattta tgcacataaa atcagctcat atccatcgat cggtccccaa tttttcaatg
     2521 attagtcaat tttttcttcc ttttgataac cgctgtggtc caataagaca agtgaatagg
     2581 gtccatttag ggctagcgta cgtggtacat cgcatgttca ctatcactta tgagcgcatg
     2641 caagtgaaat tacatgtcaa aaaaccttac gctatatata agtgtatatg gtatctgtca
     2701 acattactat acaaaacaaa tcttttattt ttattgatca catattttgt caaaaagtat
     2761 ttgttttgta tcattaggcc caaagaatgt ttttgtgtca gttttctttt cctaataaaa
     2821 cagaagaaat aaacaataag attcaacttt tcacagttaa tacagtattt gtaaaaattc
     2881 tgaacaacag attttcaaaa ctacgacatt taaaattaga acgaagatta acacgcatta
     2941 gtgagtatca aacgaattca aaaacttatg taaatatacc aagaatatgt aattataatt
     3001 aactaaacat ttttaatttt taaattaaaa tgttaaattt caatgctatt tagaacattt
     3061 tggttatgat tattaaaatc gtgacacgat ggatagtaac taaatgaaag aacaaatagg
     3121 ttgaaagcta ttgggaaata aataaatgaa cggtttatag taacatcttt atcataaagc
     3181 tggactgtct cgttgtgata taaaacaacg aagataagta aggagattta gtactgttgt
     3241 cattcgccaa cgtcaacttc actaatgatc actagtcctt ttagttttta gagagtttcc
     3301 atcagaattt gcaaacgtaa ttacaaatat tgggccttaa tttgaaacct acatagaggg
     3361 ccgagtattt gatgaagccc aatcgtctaa agtcgaaaaa catgtaaata gtcaacacac
     3421 agtgaaaata taaacatatg taaatacgtt tgtgatccaa attaaattac gatgataaga
     3481 tggaacaaca gaagctaacc ctgagatcat cttctatgac aggtgttact tagaactagt
     3541 ctggataggg agggagatat gtgtcctaga aacttcaaat aattcaaact ctattatcaa
     3601 aaaaagtcag aaataaatat agtcttgaat cagttatgca gatctcgttt gttatgtttt
     3661 tggacagtcg acgaaagaac tcctagttaa ttaatattat ctattacaat atattctcgc
     3721 aaaattaagc ttatatgtga cagctagagc tcagcgttga tattgcctcc acacttacat
     3781 tatataattc taacgggaat tatatacata aactataatc atgattagca cgaaatgtac
     3841 gaagaaaagt ctgaccaatt agttttatcc tacacgtgaa gacttgaagt tgatatgtat
     3901 taccaatata tcatcaaatt attgatataa taataagttg ttgtttggtc gagaaagcgt
     3961 gcttgcatgc tataatgcta attcatattt aaatgctttg ttgctttgat tcgctaatta
     4021 acccaaaatt ttgaaaatga ctcaaaacaa acatacagtt tttacatata ctattctgtt
     4081 gatcgtgcat gcagagatac cacagttttt ctgaaaactt caatattccg ctgacaaaac
     4141 taatatttca cgtgttagtt tttagttttt tactaattaa gacactagac taactgattc
     4201 ctactaatag gttttctaat gtaaacaaca taagagactc tagctagaaa agagaggaaa
     4261 aacaataaaa gcaaatcttg agatcttctc agtcaattga cagatgtctt tagaacaagt
     4321 ctaaatagtg gattgagaag ggaaatgtgt cacagcaaat ccaaaaaatc caaactcatc
     4381 agtttttgaa acttttggac gcaaaactcg cttggctgtg ttattcatta tttcaaagtc
     4441 cacgaaagaa aataattgtc tcgtaaatta attaattaag cttatgacag ctcaaggtcg
     4501 acgacataat tgattttgtt ccttactata aattatctat tcaaaggaaa atatatacta
     4561 gctatatata taatccttat tcgtacgaaa tgtatgaaga aaagtctaac caaatatttt
     4621 tttcgttttt ttaattaaat ctatacgaaa ttgtgcattt atatatcttg acctctatat
     4681 ccaaaacttt accaaaatct cgatttataa tcttaactca aaagaagatc gatcaactat
     4741 taacatgaga ccgaattctc gccctatagt gagtcgtatt acctggccgt cgttttacaa
     4801 cgtcgtgact gggaaaaccc tggcgttacc caacttaatc gccttgcagc acatccccct
     4861 ttcgccagct ggcgtaatag cgaagaggcc cgcaccgatc gcccttccca acagttgcgc
     4921 agcctgaatg gcgaatggcg cctgatgcgg tattttctcc ttacgcatct gtgcggtatt
     4981 tcacaccgca tatggtgcac tctcagtaca atctgctctg atgccgcata gttaagccag
     5041 ccccgacacc cgccaacacc cgctgacgcg ccctgacggg cttgtctgct cccggcatcc
     5101 gcttacagac aagctgtgac cgtctccggg agctgcatgt gtcagaggtt ttcaccgtca
     5161 tcaccgaaac gcgcga
//
