LOCUS       sequence-396436-        6393 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  pLv1-pUC18R6KT-miniTn7-Tc, TcR, ApR.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 6393)
  AUTHORS   Jorrin B, Haskett TL, Knights HE, Martyn A, Underwood TJ, Dolliver 
            J, Ledermann R, Poole PS
  TITLE     Stable, fluorescent markers for tracking synthetic communities and 
            assembly dynamics.
  JOURNAL   Microbiome. 2024 May 7;12(1):81. doi: 10.1186/s40168-024-01792-2.
  PUBMED    38715147
REFERENCE   2  (bases 1 to 6393)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; journalName: 
            "Microbiome."; date: "2024-05-7"; volume: "12(1):81. doi"; pages: " 
            10.1186/s40168-024-01792-2"
COMMENT     Sequence Label: pTn7-SCOUT13
FEATURES             Location/Qualifiers
     source          1..6393
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     oriT            1..109
                     /note="incP origin of transfer"
     rep_origin      160..516
                     /label=R6K gamma ori
                     /note="gamma replication origin from E. coli plasmid R6K; 
                     requires the R6K initiator protein pi for replication"
     CDS             complement(join(925..1716,1717..1785))
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     1548..1567
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
     promoter        complement(1786..1890)
                     /gene="bla"
                     /label=AmpR promoter
     primer_bind     1958..1976
                     /label=pBRforEco
                     /note="pBR322 vectors, upsteam of EcoRI site, forward 
                     primer"
     primer_bind     2523..2539
                     /label=pBluescriptKS
                     /note="For pBluescript vector"
     primer_bind     2524..2540
                     /label=KS primer
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     terminator      2568..2662
                     /label=lambda t0 terminator
                     /note="transcription terminator from phage lambda"
     terminator      2765..2851
                     /gene="Escherichia coli rrnB"
                     /label=rrnB T1 terminator
                     /note="transcription terminator T1 from the E. coli rrnB 
                     gene"
     protein_bind    2897..2944
                     /label=FRT
                     /bound_moiety="FLP recombinase from the Saccharomyces 
                     cerevisiae 2u plasmid"
                     /note="FLP-mediated recombination occurs in the 8-bp core 
                     sequence TCTAGAAA (Turan and Bode, 2011)."
     CDS             complement(2988..4187)
                     /codon_start=1
                     /gene="tetA"
                     /product="tetracycline efflux protein"
                     /label=TcR
                     /note="confers resistance to tetracycline"
                     /translation="MKPNIPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHY
                     GILLALYALVQFACAPVLGALSDRFGRRPILLVSLAGATVDYAIMATAPFLWVLYIGRI
                     VAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPF
                     FAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIM
                     QLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALM
                     LGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSL
                     AALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQRADR
                     "
     CDS             4293..4943
                     /codon_start=1
                     /gene="tetR"
                     /product="tetracycline resistance regulatory protein"
                     /label=TetR
                     /translation="MTKLQPNTVIRAALDLLNEVGVDGLTTRKLAERLGVQQPALYWHF
                     RNKRALLDALAEAMLAENHTHSVPRADDDWRSFLIGNARSFRQALLAYRDGARIHAGTR
                     PGAPQMETADAQLRFLCEAGFSAGDAVNALMTISYFTVGAVLEEQAGDSDAGERGGTVE
                     QAPLSPLLRAAIDAFDEAGPDAAFEQGLAVIVDGLAKRRLVVRNVEGPRKGDD"
     protein_bind    4983..5030
                     /label=FRT
                     /bound_moiety="FLP recombinase from the Saccharomyces 
                     cerevisiae 2u plasmid"
                     /note="FLP-mediated recombination occurs in the 8-bp core 
                     sequence TCTAGAAA (Turan and Bode, 2011)."
     terminator      5090..5176
                     /gene="Escherichia coli rrnB"
                     /label=rrnB T1 terminator
                     /note="transcription terminator T1 from the E. coli rrnB 
                     gene"
     protein_bind    5252..5273
                     /label=CAP binding site
                     /bound_moiety="E. coli catabolite activator protein"
                     /note="CAP binding activates transcription in the presence 
                     of cAMP."
     promoter        join(5288..5293,5294..5311,5312..5318)
                     /label=lac promoter
                     /note="promoter for the E. coli lac operon"
     protein_bind    5326..5342
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     primer_bind     5331..5353
                     /label=M13/pUC Reverse
                     /note="In lacZ gene"
     primer_bind     5350..5366
                     /label=M13 rev
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     5350..5366
                     /label=M13 Reverse
                     /note="In lacZ gene. Also called M13-rev"
     CDS             5362..5685
                     /codon_start=1
                     /gene="lacZ fragment"
                     /product="LacZ-alpha fragment of beta-galactosidase"
                     /label=lacZ-alpha
                     /translation="MTMITPSLHACRSTLEDPRVPSSNSLAVVLQRRDWENPGVTQLNR
                     LAAHPPFASWRNSEEARTDRPSQQLRSLNGEWRLMRYFLLTHLCGISHRIWCTLSTICS
                     DAA"
     misc_feature    5379..5435
                     /label=MCS
                     /note="pUC18/19 multiple cloning site"
     primer_bind     complement(5436..5453)
                     /label=M13 Forward
                     /note="In lacZ gene. Also called M13-F20 or M13 (-21) 
                     Forward"
     primer_bind     complement(5436..5452)
                     /label=M13 fwd
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     complement(5445..5467)
                     /label=M13/pUC Forward
                     /note="In lacZ gene"
     terminator      5790..5884
                     /label=lambda t0 terminator
                     /note="transcription terminator from phage lambda"
     mobile_element  5925..6090
                     /mobile_element_type="transposon:Tn7"
                     /label=Tn7L
                     /note="mini-Tn7 element (left end of the Tn7 transposon)"
ORIGIN
        1 gggcaggata ggtgaagtag gcccacccgc gagcgggtgt tccttcttca ctgtccctta
       61 ttcgcacctg gcggtgctca acgggaatcc tgctctgcga ggctggccga taagctctga
      121 taacgcagga aagaacatgg gcagttcaac ctgttgatag tacgtactaa gctctcatgt
      181 ttcacgtact aagctctcaa gtttaacgta ctaagctctc atgtttaacg aactaaaccc
      241 tcatggctaa cgtactaagc tctcatggct aacgtactaa gctctcatgt ttcacgtact
      301 aagctctcat gtttgaacaa taaaattaat ataaatcagc aacttaaata gcctctaagg
      361 ttttaagttt tataagaaaa aaaagaatat ataaggcttt taaagctttt aaggtttaac
      421 ggttgtggac aacaagccag ggatgtaacg cactgagaag cccttagagc ctctcaaagc
      481 aattttgagt gacacaggaa cacttaacgg ctgacaaccg gctggtaaca ggattagcag
      541 agcgaggtat gtaggcggtg ctacagagtt cttgaagtgg tggcctaact acggctacac
      601 tagaagaaca gtatttggta tctgcgctct gctgaagcca gttaccttcg gaaaaagagt
      661 tggtagctct tgatccggca aacaaaccac cgctggtagc ggtggttttt ttgtttgcaa
      721 gcagcagatt acgcgcagaa aaaaaggatc tcaagaagat cctttgatct tttctacggg
      781 gtctgacgct cagtggaacg aaaactcacg ttaagggatt ttggtcatga gattatcaaa
      841 aaggatcttc acctagatcc ttttaaatta aaaatgaagt tttaaatcaa tctaaagtat
      901 atatgagtaa acttggtctg acagttacca atgcttaatc agtgaggcac ctatctcagc
      961 gatctgtcta tttcgttcat ccatagttgc ctgactcccc gtcgtgtaga taactacgat
     1021 acgggagggc ttaccatctg gccccagtgc tgcaatgata ccgcgggacc cacgctcacc
     1081 ggctccagat ttatcagcaa taaaccagcc agccggaagg gccgagcgca gaagtggtcc
     1141 tgcaacttta tccgcctcca tccagtctat taattgttgc cgggaagcta gagtaagtag
     1201 ttcgccagtt aatagtttgc gcaacgttgt tgccattgct acaggcatcg tggtgtcacg
     1261 ctcgtcgttt ggtatggctt cattcagctc cggttcccaa cgatcaaggc gagttacatg
     1321 atcccccatg ttgtgcaaaa aagcggttag ctccttcggt cctccgatcg ttgtcagaag
     1381 taagttggcc gcagtgttat cactcatggt tatggcagca ctgcataatt ctcttactgt
     1441 catgccatcc gtaagatgct tttctgtgac tggtgagtac tcaaccaagt cattctgaga
     1501 atagtgtatg cggcgaccga gttgctcttg cccggcgtca atacgggata ataccgcgcc
     1561 acatagcaga actttaaaag tgctcatcat tggaaaacgt tcttcggggc gaaaactctc
     1621 aaggatctta ccgctgttga gatccagttc gatgtaaccc actcgtgcac ccaactgatc
     1681 ttcagcatct tttactttca ccagcgtttc tgggtgagca aaaacaggaa ggcaaaatgc
     1741 cgcaaaaaag ggaataaggg cgacacggaa atgttgaata ctcatactct tcctttttca
     1801 atattattga agcatttatc agggttattg tctcatgagc ggatacatat ttgaatgtat
     1861 ttagaaaaat aaacaaatag gggttccgcg tacatttccc cgaaaagtgc cacctgacgt
     1921 ctaagaaacc attattatca tgacattaac ctataaaaat aggcgtatca cgaggccctt
     1981 tcgtctaagc agacggtcac agcttgtctg taagcggatg ccgggagcag acaagcccgt
     2041 cagggcgcgt cagcgggtgt tggcgggtgt cggggctggc ttaactatgc ggcatcagag
     2101 cagattgtac tgagagtgca ccatatgcgg tgtgaaatac cgcacagatg cgtaaggaga
     2161 aaataccgca tcaggcgcca ttcgccattc aggctgcgca actgttggga agggcgatcg
     2221 gtgcgggcct cttcgctatt acgccagcta gaggaccagc cgcgtaacct ggcaaaatcg
     2281 gttacggttg agtaataaat ggatgccctg cgtaagcagg tgtgggcgga caataaagtc
     2341 ttaaactgaa caaaatagat ctaaactatg acaataaagt cttaaactag acagaatagt
     2401 tgtaaactga aatcagtcca gttatgctgt gaaaaagcat actggacttt tgttatggct
     2461 aaagcaaact cttcattttc tgaagtgcaa attgcccgtc gtattaaaga ggggcgtggg
     2521 gttcgaggtc gacggtatcg ataagctagc ttaattagct gagcttggac tcctgttgat
     2581 agatccagta atgacctcag aactccatct ggatttgttc agaacgctcg gttgccgccg
     2641 ggcgtttttt attggtgaga atccaagcta gactgcgatg agtggcaggg cggggcgtaa
     2701 tttttttaag gcagttattg gtgcccttaa acgcctgggg taatgactct ctagcttgag
     2761 gcatcaaata aaacgaaagg ctcagtcgaa agactgggcc tttcgtttta tctgttgttt
     2821 gtcggtgaac gctctcctga gtaggacaaa tccgccgcta ggagcttgcg gcccggacga
     2881 tcgaattggg gatcttgaag tacctattcc gaagttccta ttctctagaa agtataggaa
     2941 cttcagagcg cttttgaagc tgatgtgctt aaaaacttac tcttagttca gcgatcggct
     3001 cgttgccctg cgccgctcca aagcccgcga cgcagcgccg gcaggcagag caagtagagg
     3061 gcagcgcctg caatccatgc ccacccgttc cacgttgtta tagaagccgc atagatcgcc
     3121 gtgaagagga ggggtccgac gatcgaggtc aggctggtga gcgccgccag tgagccttgc
     3181 agctgcccct gacgttcctc atccacctgc ctggacaaca ttgcttgcag cgccggcatt
     3241 ccgatgccac ccgaagcaag caggaccatg atcgggaacg ccatccatcc ccgtgtcgcg
     3301 aaggcaagca ggatgtagcc tgtgccgtcg gcaatcattc cgagcatgag tgcccgcctt
     3361 tcgccgagcc gggcggctac agggccggtg atcattgcct gggcgagtga atgcagaatg
     3421 ccaaatgcgg caagcgaaat gccgatcgtg gtcgcgtccc agtgaaagcg atcctcgccg
     3481 aaaatgaccc aaagcgcggc cggcacctgt ccgacaagtt gcatgatgaa gaacaccgcc
     3541 atcagggcgg cgacgacggt catgccccgg gcccaccgga acgaagcgag cgggttgaga
     3601 gcctcccggc gtaacggccg gcgttcgcct ttgtgcgact ccggcaaaag gaaacagccc
     3661 gtcaggaaat tgaggccgtt caaggctgcc gcggcgaaga acggagcgtg gggggagaaa
     3721 ccgcccatca gcccaccgag cacaggtccc gcgaccatcc cgaacccgaa acaggcgctc
     3781 atgaagccga agtgccgcgc gcgctcatcg ccatcagtga tatcggcaat ataagcgccg
     3841 gctaccgccc cagtcgcccc ggtgatgccg gccacgatcc gcccgatata gagaacccaa
     3901 aggaaaggcg ctgtcgccat gatggcgtag tcgacagtgg cgccggccag cgacacgagc
     3961 aagattggcc gccgcccgaa acgatccgac agcgcgccca gcacaggtgc gcaggcaaat
     4021 tgcaccaacg catacagcgc cagcagaatg ccatagtggg cggtgacgtc gttcgagtga
     4081 accagatcgc gcaggaggcc cggcagcacc ggcataatca ggccgatgcc gacagcgtcg
     4141 agcgcgacag tgctcagaat tacgatcagg ggtatgttgg gtttcacgtc tggcctccgg
     4201 accagcctcc gctggtccga ttgaacgcgc ggattcttta tcactgataa gttggtggac
     4261 atattatgtt tatcagtgat aaagtgtcaa gcatgacaaa gttgcagccg aatacagtga
     4321 tccgtgccgc cctggacctg ttgaacgagg tcggcgtaga cggtctgacg acacgcaaac
     4381 tggcggaacg gttgggggtt cagcagccgg cgctttactg gcacttcagg aacaagcggg
     4441 cgctgctcga cgcactggcc gaagccatgc tggcggagaa tcatacgcat tcggtgccga
     4501 gagccgacga cgactggcgc tcatttctga tcgggaatgc ccgcagcttc aggcaggcgc
     4561 tgctcgccta ccgcgatggc gcgcgcatcc atgccggcac gcgaccgggc gcaccgcaga
     4621 tggaaacggc cgacgcgcag cttcgcttcc tctgcgaggc gggtttttcg gccggggacg
     4681 ccgtcaatgc gctgatgaca atcagctact tcactgttgg ggccgtgctt gaggagcagg
     4741 ccggcgacag cgatgccggc gagcgcggcg gcaccgttga acaggctccg ctctcgccgc
     4801 tgttgcgggc cgcgatagac gccttcgacg aagccggtcc ggacgcagcg ttcgagcagg
     4861 gactcgcggt gattgtcgat ggattggcga aaaggaggct cgttgtcagg aacgttgaag
     4921 gaccgagaaa gggtgacgat tgattgctcc attgctgttg acaaagggaa tcaggggatc
     4981 ttgaagttcc tattccgaag ttcctattct ctagaaagta taggaacttc agagcgcttt
     5041 tgaagctaat tcgagatcat gcataatgcc gaattcggat cccaggcatc aaataaaacg
     5101 aaaggctcag tcgaaagact gggcctttcg ttttatctgt tgtttgtcgg tgaacgctct
     5161 cctgagtagg acaaatccgc cgtccggagt gagaccgcag ctggcacgac aggtttgccg
     5221 actggaaagc gggcagtgag cgcaacgcaa ttaatgtgag ttagctcact cattaggcac
     5281 cccaggcttt acactttatg cttccggctc gtatgttgtg tggaattgtg agcggataac
     5341 aatttcacac aggaaacagc tatgaccatg attacgccaa gcttgcatgc ctgcaggtcg
     5401 actctagagg atccccgggt accgagctcg aattcactgg ccgtcgtttt acaacgtcgt
     5461 gactgggaaa accctggcgt tacccaactt aatcgccttg cagcacatcc ccctttcgcc
     5521 agctggcgta atagcgaaga ggcccgcacc gatcgccctt cccaacagtt gcgcagcctg
     5581 aatggcgaat ggcgcctgat gcggtatttt ctccttacgc atctgtgcgg tatttcacac
     5641 cgcatatggt gcactctcag tacaatctgc tctgatgccg catagttaag ccagccccga
     5701 cacccgccaa cacccgctga cgcgccctga cgggcttgtc tgctcccggc atccgcttac
     5761 agacaagctg tgacggtctc acgctcttgg actcctgttg atagatccag taatgacctc
     5821 agaactccat ctggatttgt tcagaacgct cggttgccgc cgggcgtttt ttattggtga
     5881 gaatccaggc aatcaatcgt gctttcgcga aggccttgca ggccaaccag ataagtgaaa
     5941 tctagttcca aactattttg tcatttttaa ttttcgtatt agcttacgac gctacaccca
     6001 gttcccatct attttgtcac tcttccctaa ataatcctta aaaactccat ttccacccct
     6061 cccagttccc aactattttg tccgcccaca gcggggcatt tttcttcctg ttatgtttgg
     6121 gcgctgcatt aatgaatcgg ccaacgcgcg gggagaggcg gtttgcgtat tgggcgctct
     6181 tccgcttcct cgctcactga cccgctgcgc tcggtcgttc ggctgcggcg agcggtatca
     6241 ggggattcct taaggtatac tttccgctgc ataaccctgc ttcggggtca ttatagcgat
     6301 tttttcggta tatccatcct ttttcgcacg atatacagga ttttgccaaa gggttcgtgt
     6361 agactttcct tggtgtatcc aacggcgtca gcc
//
