LOCUS       sequence-407498-        8820 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  Express mEGFP-tagged fusion protein, ZCCHC7_PAX5 from 
            patient-derived sequence.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 8820)
  AUTHORS   Tripathi S, Shirnekhi HK, Gorman SD, Chandra B, Baggett DW, Park CG,
            Somjee R, Lang B, Hosseini SMH, Pioso BJ, Li Y, Iacobucci I, Gao Q, 
            Edmonson MN, Rice SV, Zhou X, Bollinger J, Mitrea DM, White MR, 
            McGrail DJ, Jarosz DF, Yi SS, Babu MM, Mullighan CG, Zhang J, Sahni 
            N, Kriwacki RW
  TITLE     Defining the condensate landscape of fusion oncoproteins.
  JOURNAL   Nat Commun. 2023 Sep 28;14(1):6008. doi: 10.1038/s41467-023-41655-2.
  PUBMED    37770423
REFERENCE   2  (bases 1 to 8820)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; journalName: "Nat 
            Commun."; date: "2023-09-28"; volume: "14(1):6008. doi"; pages: " 
            10.1038/s41467-023-41655-2"
COMMENT     Sequence Label: CL20_mEGFP_ZCCHC7_PAX5
FEATURES             Location/Qualifiers
     source          1..8820
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     primer_bind     220..239
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     primer_bind     473..490
                     /label=L4440
                     /note="L4440 vector, forward primer"
     polyA_signal    558..692
                     /label=SV40 poly(A) signal
                     /note="SV40 polyadenylation signal"
     primer_bind     complement(582..601)
                     /label=EBV-rev
                     /note="SV40 polyA terminator, reverse primer"
     primer_bind     636..655
                     /label=SV40pA-R
                     /note="SV40 polyA, reverse primer"
     promoter        complement(698..893)
                     /label=SV40 promoter
                     /note="SV40 early promoter"
     rep_origin      712..847
                     /label=SV40 ori
                     /note="SV40 origin of replication"
     protein_bind    952..973
                     /label=CAP binding site
                     /bound_moiety="E. coli catabolite activator protein"
                     /note="CAP binding activates transcription in the presence 
                     of cAMP."
     promoter        join(988..993,994..1011,1012..1018)
                     /label=lac promoter
                     /note="promoter for the E. coli lac operon"
     protein_bind    1026..1042
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     primer_bind     1031..1053
                     /label=M13/pUC Reverse
                     /note="In lacZ gene"
     primer_bind     1050..1066
                     /label=M13 rev
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     1050..1066
                     /label=M13 Reverse
                     /note="In lacZ gene. Also called M13-rev"
     primer_bind     1409..1428
                     /label=rbglobpA-R
                     /note="Rabbit beta-globin polyA, reverse primer. Also 
                     called rb-glob-pA-term-R"
     polyA_signal    1427..1482
                     /label=beta-globin poly(A) signal
                     /note="rabbit beta-globin polyadenylation signal (Gil and 
                     Proudfoot, 1987)"
     primer_bind     1528..1547
                     /label=Bglob-pA-R
                     /note="Rabbit beta-globin polyA region, reverse primer"
     CDS             complement(join(3581..4291,4292..4294,4295..4297))
                     /codon_start=1
                     /product="enhanced GFP with monomerizing A206K mutation 
                     (Zacharias et al., 2002)"
                     /label=mEGFP
                     /note="mammalian codon-optimized"
                     /translation="MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTL
                     KFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDD
                     GNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIK
                     VNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLL
                     EFVTAAGITLGMDELYK"
     primer_bind     complement(3623..3644)
                     /label=EGFP-C
                     /note="EGFP, forward primer"
     primer_bind     3972..3991
                     /label=EXFP-R
                     /note="For distinguishing EGFP variants, reverse primer"
     primer_bind     4231..4252
                     /label=EGFP-N
                     /note="EGFP, reverse primer"
     regulatory      4294..4303
                     /label=Kozak sequence
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
                     /regulatory_class="other"
     promoter        complement(4379..4582)
                     /label=CMV promoter
                     /note="human cytomegalovirus (CMV) immediate early 
                     promoter"
     primer_bind     complement(4408..4428)
                     /label=CMV-F
                     /note="Human CMV immediate early promoter, forward primer"
     enhancer        4583..4886
                     /label=CMV enhancer
                     /note="human cytomegalovirus immediate early enhancer"
     CDS             complement(5143..5187)
                     /codon_start=1
                     /product="antigenic peptide corresponding to amino acids 
                     655 to 669 of the HIV envelope protein gp41 (Lutje Hulsik 
                     et al., 2013)"
                     /label=gp41 peptide
                     /note="recognized by the 2H10 single-chain llama nanobody"
                     /translation="KNEQELLELDKWASL"
     misc_feature    5372..5605
                     /label=RRE
                     /note="The Rev response element (RRE) of HIV-1 allows for 
                     Rev-dependent mRNA export from the nucleus to the 
                     cytoplasm."
     misc_feature    5965..6082
                     /label=cPPT/CTS
                     /note="central polypurine tract and central termination 
                     sequence of HIV-1"
     misc_feature    6574..6699
                     /label=HIV-1 Psi
                     /note="packaging signal of human immunodeficiency virus 
                     type 1"
     LTR             6746..7003
                     /label=5' LTR (truncated)
                     /note="truncated 5' long terminal repeat (LTR) from HIV-1"
     enhancer        7005..7384
                     /label=CMV enhancer
                     /note="human cytomegalovirus immediate early enhancer"
     promoter        7415..7519
                     /gene="bla"
                     /label=AmpR promoter
     CDS             join(7520..7588,7589..8380)
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     complement(7738..7757)
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
     rep_origin      join(8551..8820,1..319)
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
ORIGIN
        1 gttggactca agacgatagt taccggataa ggcgcagcgg tcgggctgaa cggggggttc
       61 gtgcacacag cccagcttgg agcgaacgac ctacaccgaa ctgagatacc tacagcgtga
      121 gctatgagaa agcgccacgc ttcccgaagg gagaaaggcg gacaggtatc cggtaagcgg
      181 cagggtcgga acaggagagc gcacgaggga gcttccaggg ggaaacgcct ggtatcttta
      241 tagtcctgtc gggtttcgcc acctctgact tgagcgtcga tttttgtgat gctcgtcagg
      301 ggggcggagc ctatggaaaa acgccagcaa cgcggccttt ttacggttcc tggccttttg
      361 ctggcctttt gctcacatgt tctttcctgc gttatcccct gattctgtgg ataaccgtat
      421 taccgccttt gagtgagctg ataccgctcg ccgcagccga acgaccgagc gcagcgagtc
      481 agtgagcgag gaagcggaag agcgcccaat acgcaaaccg cctctccccg cgcgttggcc
      541 gattcattaa tgcagcggat ccagacatga taagatacat tgatgagttt ggacaaacca
      601 caactagaat gcagtgaaaa aaatgcttta tttgtgaaat ttgtgatgct attgctttat
      661 ttgtaaccat tataagctgc aataaacaag ttagcttttt gcaaaagcct aggcctccaa
      721 aaaagcctcc tcactacttc tggaatagct cagaggccga ggcggcctcg gcctctgcat
      781 aaataaaaaa aattagtcag ccatggggcg gagaatgggc ggaactgggc ggagttaggg
      841 gcgggatggg cggagttagg ggcgggacta tggttgctga ctaattgaga tgcggatccg
      901 ctggcacgac aggtttcccg actggaaagc gggcagtgag cgcaacgcaa ttaatgtgag
      961 ttagctcact cattaggcac cccaggcttt acactttatg cttccggctc gtatgttgtg
     1021 tggaattgtg agcggataac aatttcacac aggaaacagc tatgaccatg attacgccaa
     1081 gcttgggctg caggtcgagg gatctccata agagaagagg gacagctatg actgggagta
     1141 gtcaggagag gaggaaaaat ctggctagta aaacatgtaa ggaaaatttt agggatgtta
     1201 aagaaaaaaa taacacaaaa caaaatataa aaaaaatcta acctcaagtc aaggcttttc
     1261 tatggaataa ggaatggaca gcagggggct gtttcatata ctgatgacct ctttatagcc
     1321 aacctttgtt catggcagcc agcatatggg catatgttgc caaactctaa accaaatact
     1381 cattctgatg ttttaaatga tttgccctcc catatgtcct tccgagtgag agacacaaaa
     1441 aattccaaca cactattgca atgaaaataa atttccttta ttagccagaa gtcagatgct
     1501 caaggggctt catgatgtcc ccataatttt tggcagaggg aaaaagatct gctagctcga
     1561 gcagctgaag ctttattgag gcttaagcag tgggttccct agttagccag agagctccca
     1621 ggctcagatc tggtctaacc agagagaccc agtacaggca aaaagcagat cttgtcttct
     1681 ttgggagtga attagccctt ccagtccccc cttttctttt aaaaagtggc taagatctac
     1741 agctgccttg taagtcattg gtcttaaagg taccgtaatc ttatctagaa ccggttcagt
     1801 gacggtcgta tgcggttgct gcagctggtg gcgctgcacc acgtgcggct gcggagtaat
     1861 agtaaggcga gcctaacaga cccggatttg gaaaacgcca cgagtcgttg taagaagagt
     1921 attgtgggtg cgaatatggc gagccagaga attcacttcc tggtaccatc cccgttaatg
     1981 taggggcaga ataggagcct tgtccagctg gggggacatg tgggggatag cccggtaatg
     2041 tggtagaggc aaggtcacgc cctgttacga ttgggtatga ctgaggaccc ggtactgatg
     2101 acccaatgtc cgctggtgtt ggagatgcca agtttgcttt catatcgtca agcccgccgg
     2161 ccaaactagc cattgcactg tattccgtag tctgttctgg tttgataggc tccgttgtgg
     2221 taaagatgtc agagtaatgc tgacgttcga acacgcgatc caggacctcc aattgttgct
     2281 gggtgaacag atcaccgcgc atctgcttgc gcaagaaatc gcgtccaggc agactatgac
     2341 catttgggac tggggactct tggattcctt cgtcgcgttt acgtttattt gtgtcggccg
     2401 atgggctagt aataccaagg ataccggaaa tggaataaga actgccggct gaatcggtgg
     2461 aaacagatga aacttgtgtg acggagcccg tactcacgat cgagtggctg ctcgctggca
     2521 caggttggtt gggtggctgc tgtaccttag tgcgaatgat gcggttgatc gaagaaacgg
     2581 agggcactgt atcgttgtca catacgcgct ccgccaataa gcgatcacga atctcccaag
     2641 cgaacatggt gggattttga cgcttatatt ccgcaatctt ttccacgacc tttggagtag
     2701 ccacctttgg cttactgcca ccgattactc cgggtttgat cgagccggtc tcgtaataac
     2761 gacccaagat tttggagaca cacccgtggc taacgcgaag ttggcgggag atgtcacagg
     2821 gacgcacacc ttgatgcgca agctccacaa tacgctgacg aacgacatcg ggtaaggggc
     2881 gcccgtttac aaaaacaccg cccaattggt taacaccccc gtgaccttct gtgactgaat
     2941 tctcacaacc taccagattc aacaggatgt catcatcttt atcgtccact tcgcatccaa
     3001 gaagcatcca tgactctacg ttgtcacctt cgctaatagt cgattcctct tcttctgagc
     3061 tcgacacttc gataatcatc acctcacgga taaccccaga gcgttcttca ctcttcggct
     3121 tctcgatatc gcttttacat tttttatcaa caagctcgtt tgattgcagg gacgagctca
     3181 gaccatgtgc attttcttgt gcttggacac gaacgttttt acctttgcag cgatagatac
     3241 tatcttcatc gctcagtgta ataacttcag agccgtcgct taattgaatc acttctgaat
     3301 ccgacaatac aatcaatttc ttttgattgg gcttcgagct cgatgattca ctattcccag
     3361 aattcttctc ttcatgctct tcctcacgaa tcacgtcgtc caagtcttgt gcgtagtgaa
     3421 tttgcgaata caactggaac tcaacttcgg agtcaaccga aagctcgcta ctactttcat
     3481 cgcgataaag atcgtcctcg taagcctcga tggtttcata gcctccgaac atcattcccc
     3541 gggaagcggc cgcacttccc ccggagcctc cgcttccgcc cttgtacagc tcgtccatgc
     3601 cgagagtgat cccggcggcg gtcacgaact ccagcaggac catgtgatcg cgcttctcgt
     3661 tggggtcttt gctcagcttg gactgggtgc tcaggtagtg gttgtcgggc agcagcacgg
     3721 ggccgtcgcc gatgggggtg ttctgctggt agtggtcggc gagctgcacg ctgccgtcct
     3781 cgatgttgtg gcggatcttg aagttcacct tgatgccgtt cttctgcttg tcggccatga
     3841 tatagacgtt gtggctgttg tagttgtact ccagcttgtg ccccaggatg ttgccgtcct
     3901 ccttgaagtc gatgcccttc agctcgatgc ggttcaccag ggtgtcgccc tcgaacttca
     3961 cctcggcgcg ggtcttgtag ttgccgtcgt ccttgaagaa gatggtgcgc tcctggacgt
     4021 agccttcggg catggcggac ttgaagaagt cgtgctgctt catgtggtcg gggtagcggc
     4081 tgaagcactg cacgccgtag gtcagggtgg tcacgagggt gggccagggc acgggcagct
     4141 tgccggtggt gcagatgaac ttcagggtca gcttgccgta ggtggcatcg ccctcgccct
     4201 cgccggacac gctgaacttg tggccgttta cgtcgccgtc cagctcgacc aggatgggca
     4261 ccaccccggt gaacagctcc tcgcccttgc tcaccatggt ggcgaccggt ggatcccggg
     4321 cccgcggtac cgtcgactgc agaattcggt tcactaaacg agcccggttc actaaacgag
     4381 ctctgcttat atagacctcc caccgtacac gcctaccgcc catttgcgtc aatggggcgg
     4441 agttgttacg acattttgga aagtcccgtt gattttggtg ccaaaacaaa ctcccattga
     4501 cgtcaatggg gtggagactt ggaaatcccc gtgagtcaaa ccgctatcca cgcccattga
     4561 tgtactgcca aaaccgcatc accatggtaa tagcgatgac taatacgtag atgtactgcc
     4621 aagtaggaaa gtcccataag gtcatgtact gggcataatg ccaggcgggc catttaccgt
     4681 cattgacgtc aatagggggc gtacttggca tatgatacac ttgatgtact gccaagtggg
     4741 cagtttaccg taaatactcc acccattgac gtcaatggaa agtccctatt ggcgttacta
     4801 tgggaacata cgtcattatt gacgtcaatg ggcgggggtc gttgggcggt cagccaggcg
     4861 ggccatttac cgtaagttat gtaacgcgga actccatata tgggctatga actaatgacc
     4921 ccgtaattga ttactattaa taactagcac gcgttcgaag cttgagctcg gtcccctcgg
     4981 ggttgggagg tgggtctgaa acgataatgg tgaatatccc tgcctaactc tattcactat
     5041 agaaagtaca gcaaaaacta ttcttaaacc taccaagcct cctactatca ttatgaataa
     5101 ttttatatac cacagccaat ttgttatgtt aaaccaattc cacaaacttg cccatttatc
     5161 taattccaat aattcttgtt cattcttttc ttgctggttt tgcgattctt caattaagga
     5221 gtgtattaag cttgtgtaat tgttaatttc tctgtcccac tccatccagg tcgtgtgatt
     5281 ccaaatctgt tccagagatt tattactcca actagcattc caaggcacag cagtggtgca
     5341 aatgagtttt ccagagcaac cccaaatccc caggagctgt tgatccttta ggtatctttc
     5401 cacagccagg attcttgcct ggagctgctt gatgccccag actgtgagtt gcaacagatg
     5461 ctgttgcgcc tcaatagccc tcagcaaatt gttctgctgc tgcactatac cagacaataa
     5521 ttgtctggcc tgtaccgtca gcgtcattga cgctgcgccc atagtgcttc ctgctgctcc
     5581 caagaaccca aggaacaaag ctcctattcc cactgctctt ttttctctct gcaccactct
     5641 tctctttgcc ttggtgggtg ctactcctaa tggttcaatt tttactactt tatatttata
     5701 taattcactt ctccaattgt ccctcatatc tcctccttat ggtgttttac taaacttttc
     5761 catgttctaa tcctcatcct gtctacttgc cacacaatca tcacctgcca tctgttttcc
     5821 ataatcccta atgatctttg cttttcttct tggcactact tttatgtcac tattatcttg
     5881 tattactact gccccttcac ctttccagag gagctttgct ggtcctttcc aaagtggatt
     5941 tctgctgtcc ctgtaataaa cccgaaaatt ttgaattttt gtaatttgtt tttgtaattc
     6001 tttagtttgt atgtctgttg ctattatgtc tactattctt tcccctgcac tgtacccccc
     6061 aatcccccct tttcttttaa aattgtggat gaatactgcc atttgtactg ctgtcttaag
     6121 atgttcagcc tgatctctta cctgtcctat aattttcttt aattctttat tcatagattc
     6181 tactactcct tgactttggg gattgtaggg aatttccagg tctgaagatc ctgctgcttg
     6241 ctgtgctttt ttcttacttt tgttttgctc ttcctctatc ttgtctaaag cttccttggt
     6301 gtcttttatc tctatccttt gatgcacaca atagagggtt gctactgtat tatataatga
     6361 tctaagttct tctgatcctg tctgaaggga tggttgtagc tgtcccagta tttgtctaca
     6421 gccttctgat gtttctaaca ggccagtatt aactgcgaat cgttctagct ccctgcttgc
     6481 ccatactata tgttttaatt tatatttttt ctttccccct ggccttaacc gaattttttc
     6541 ccatcgcgat ctaattctcc cccgcttaat actgacgctc tcgcacccat ctctctcctt
     6601 ctagcctccg ctagtcaaaa tttttggcgt actcaccagt cgccgcccct cgcctcttgc
     6661 cgtgcgcgct tcagcaagcc gagtcctgcg tcgagagagc tcctctggtt tccctttcgc
     6721 tttcaagtcc ctgttcgggc gccactgcta gagattttcc acactgacta aaagggtctg
     6781 agggatctct agttaccaga gtcacacaac agacgggcac acactacttg aagcactcaa
     6841 ggcaagcttt attgaggctt aagcagtggg ttccctagtt agccagagag ctcccaggct
     6901 cagatctggt ctaaccagag agacccagta caggcaaaaa gcagctgctt atatgcagga
     6961 tctgagggct cgccactccc cagtcccgcc caggccacgc ctcccatggt aatagcgatg
     7021 actaatacgt agatgtactg ccaagtagga aagtcccata aggtcatgta ctgggcataa
     7081 tgccaggcgg gccatttacc gtcattgacg tcaatagggg gcgtacttgg catatgatac
     7141 acttgatgta ctgccaagtg ggcagtttac cgtaaatact ccacccattg acgtcaatgg
     7201 aaagtcccta ttggcgttac tatgggaaca tacgtcatta ttgacgtcaa tgggcggggg
     7261 tcgttgggcg gtcagccagg cgggccattt accgtaagtt atgtaacgcg gaactccata
     7321 tatgggctat gaactaatga ccccgtaatt gattactatt aataactagt caataatcaa
     7381 tgtcgaccca ggtggcactt ttcggggaaa tgtgcgcgga acccctattt gtttattttt
     7441 ctaaatacat tcaaatatgt atccgctcat gagacaataa ccctgataaa tgcttcaata
     7501 atattgaaaa aggaagagta tgagtattca acatttccgt gtcgccctta ttcccttttt
     7561 tgcggcattt tgccttcctg tttttgctca cccagaaacg ctggtgaaag taaaagatgc
     7621 tgaagatcag ttgggtgcac gagtgggtta catcgaactg gatctcaaca gcggtaagat
     7681 ccttgagagt tttcgccccg aagaacgttt tccaatgatg agcactttta aagttctgct
     7741 atgtggcgcg gtattatccc gtattgacgc cgggcaagag caactcggtc gccgcataca
     7801 ctattctcag aatgacttgg ttgagtactc accagtcaca gaaaagcatc ttacggatgg
     7861 catgacagta agagaattat gcagtgctgc cataaccatg agtgataaca ctgcggccaa
     7921 cttacttctg acaacgatcg gaggaccgaa ggagctaacc gcttttttgc acaacatggg
     7981 ggatcatgta actcgccttg atcgttggga accggagctg aatgaagcca taccaaacga
     8041 cgagcgtgac accacgatgc ctgtagcaat ggcaacaacg ttgcgcaaac tattaactgg
     8101 cgaactactt actctagctt cccggcaaca attaatagac tggatggagg cggataaagt
     8161 tgcaggacca cttctgcgct cggcccttcc ggctggctgg tttattgctg ataaatctgg
     8221 agccggtgag cgtgggtctc gcggtatcat tgcagcactg gggccagatg gtaagccctc
     8281 ccgtatcgta gttatctaca cgacggggag tcaggcaact atggatgaac gaaatagaca
     8341 gatcgctgag ataggtgcct cactgattaa gcattggtaa ctgtcagacc aagtttactc
     8401 atatatactt tagattgatt taaaacttca tttttaattt aaaaggatct aggtgaagat
     8461 cctttttgat aatctcatga ccaaaatccc ttaacgtgag ttttcgttcc actgagcgtc
     8521 agaccccgta gaaaagatca aaggatcttc ttgagatcct ttttttctgc gcgtaatctg
     8581 ctgcttgcaa acaaaaaaac caccgctacc agcggtggtt tgtttgccgg atcaagagct
     8641 accaactctt tttccgaagg taactggctt cagcagagcg cagataccaa atactgttct
     8701 tctagtgtag ccgtagttag gccaccactt caagaactct gtagcaccgc ctacatacct
     8761 cgctctgcta atcctgttac cagtggctgc tgccagtggc gataagtcgt gtcttaccgg
//
