LOCUS       sequence-461131-        6690 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  Vector for generating Flp-In cell lines allowing dox-inducible 
            mammalian expression of ZNF207_∆RNA3_3xFLAG.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 6690)
  AUTHORS   Behera AK, Kim JJ, Kordale S, Damodaran AP, Kumari B, Vidak S, 
            Dickson E, Xiao MS, Duncan G, Andresson T, Misteli T, 
            Gonatopoulos-Pournatzis T
  TITLE     RNA-coupled CRISPR Screens Reveal ZNF207 as a Regulator of LMNA 
            Aberrant Splicing in Progeria.
  JOURNAL   bioRxiv [Preprint]. 2025 Apr 26:2025.04.25.648738. doi: 
            10.1101/2025.04.25.648738.
  PUBMED    40568141
REFERENCE   2  (bases 1 to 6690)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; journalName: "bioRxiv 
            [Preprint]. 2025 Apr 26:2025.04.25.648738. doi: 
            10.1101/2025.04.25.648738."
COMMENT     Sequence Label: pcDNA5-ZNF207_∆RNA3_-3xFLAG
FEATURES             Location/Qualifiers
     source          1..6690
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     polyA_signal    390..511
                     /label=SV40 poly(A) signal
                     /note="SV40 polyadenylation signal"
     primer_bind     complement(427..446)
                     /label=SV40pA-R
                     /note="SV40 polyA, reverse primer"
     primer_bind     481..500
                     /label=EBV-rev
                     /note="SV40 polyA terminator, reverse primer"
     primer_bind     complement(560..576)
                     /label=M13 rev
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     complement(560..576)
                     /label=M13 Reverse
                     /note="In lacZ gene. Also called M13-rev"
     primer_bind     complement(573..595)
                     /label=M13/pUC Reverse
                     /note="In lacZ gene"
     protein_bind    584..600
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     promoter        complement(join(608..614,615..632,633..638))
                     /label=lac promoter
                     /note="promoter for the E. coli lac operon"
     protein_bind    653..674
                     /label=CAP binding site
                     /bound_moiety="E. coli catabolite activator protein"
                     /note="CAP binding activates transcription in the presence 
                     of cAMP."
     primer_bind     complement(791..808)
                     /label=L4440
                     /note="L4440 vector, forward primer"
     rep_origin      complement(962..1550)
                     /direction=LEFT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     complement(1042..1061)
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     CDS             complement(join(1721..2512,2513..2581))
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     2344..2363
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
     promoter        complement(2582..2686)
                     /gene="bla"
                     /label=AmpR promoter
     primer_bind     complement(2761..2780)
                     /label=pRS-marker
                     /note="pRS vectors, use to sequence yeast selectable 
                     marker"
     enhancer        2952..3331
                     /label=CMV enhancer
                     /note="human cytomegalovirus immediate early enhancer"
     promoter        3332..3535
                     /label=CMV promoter
                     /note="human cytomegalovirus (CMV) immediate early 
                     promoter"
     primer_bind     3486..3506
                     /label=CMV-F
                     /note="Human CMV immediate early promoter, forward primer"
     protein_bind    3537..3555
                     /gene="tetO"
                     /label=tet operator
                     /bound_moiety="tetracycline repressor TetR"
                     /note="bacterial operator O2 for the tetR and tetA genes"
     protein_bind    3558..3576
                     /gene="tetO"
                     /label=tet operator
                     /bound_moiety="tetracycline repressor TetR"
                     /note="bacterial operator O2 for the tetR and tetA genes"
     primer_bind     3586..3610
                     /label=LNCX
                     /note="Human CMV promoter, forward primer"
     protein_bind    3753..3777
                     /gene="mutant version of attB"
                     /label=attB1
                     /bound_moiety="BP Clonase(TM)"
                     /note="recombination site for the Gateway(R) BP reaction"
     protein_bind    complement(5188..5212)
                     /gene="mutant version of attB"
                     /label=attB2
                     /bound_moiety="BP Clonase(TM)"
                     /note="recombination site for the Gateway(R) BP reaction"
     CDS             5253..5318
                     /codon_start=1
                     /product="three tandem FLAG(R) epitope tags, followed by an
                     enterokinase cleavage site"
                     /label=3xFLAG
                     /translation="DYKDHDGDYKDHDIDYKDDDDK"
     primer_bind     complement(5359..5376)
                     /label=BGH-rev
                     /note="Bovine growth hormone terminator, reverse primer. 
                     Also called BGH reverse"
     polyA_signal    5365..5589
                     /label=bGH poly(A) signal
                     /note="bovine growth hormone polyadenylation signal"
     primer_bind     complement(5722..5741)
                     /label=F1ori-R
                     /note="F1 origin, reverse primer"
     protein_bind    5873..5920
                     /label=FRT
                     /bound_moiety="FLP recombinase from the Saccharomyces 
                     cerevisiae 2u plasmid"
                     /note="FLP-mediated recombination occurs in the 8-bp core 
                     sequence TCTAGAAA (Turan and Bode, 2011)."
     CDS             join(5928..6690,1..260)
                     /codon_start=1
                     /product="hygromycin B phosphotransferase"
                     /label=HygR
                     /note="confers resistance to hygromycin"
                     /translation="KKPELTATSVEKFLIEKFDSVSDLMQLSEGEESRAFSFDVGGRGY
                     VLRVNSCADGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQGVTLQDLPE
                     TELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQT
                     VMDDTVSASVAQALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMFG
                     DSQYEVANIFFWRPWLACMEQQTRYFERRHPELAGSPRLRAYMLRIGLDQLYQSLVDGN
                     FDDAAWAQGRCDAIVRSGAGTVGRTQIARRSAAVWTDGCVEVLADSGNRRPSTRPRAKE
                     "
     CDS             join(5928..6690,1..260)
                     /codon_start=1
                     /gene="aph(4)-Ia"
                     /product="aminoglycoside phosphotransferase from E. coli"
                     /label=HygR
                     /note="confers resistance to hygromycin"
                     /translation="KKPELTATSVEKFLIEKFDSVSDLMQLSEGEESRAFSFDVGGRGY
                     VLRVNSCADGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQGVTLQDLPE
                     TELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQT
                     VMDDTVSASVAQALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMFG
                     DSQYEVANIFFWRPWLACMEQQTRYFERRHPELAGSPRLRAYMLRIGLDQLYQSLVDGN
                     FDDAAWAQGRCDAIVRSGAGTVGRTQIARRSAAVWTDGCVEVLADSGNRRPSTRPRAKE
                     "
ORIGIN
        1 ttgcaggatc gccgcggctc cgggcgtata tgctccgcat tggtcttgac caactctatc
       61 agagcttggt tgacggcaat ttcgatgatg cagcttgggc gcagggtcga tgcgacgcaa
      121 tcgtccgatc cggagccggg actgtcgggc gtacacaaat cgcccgcaga agcgcggccg
      181 tctggaccga tggctgtgta gaagtactcg ccgatagtgg aaaccgacgc cccagcactc
      241 gtccgagggc aaaggaatag cacgtactac gagatttcga ttccaccgcc gccttctatg
      301 aaaggttggg cttcggaatc gttttccggg acgccggctg gatgatcctc cagcgcgggg
      361 atctcatgct ggagttcttc gcccacccca acttgtttat tgcagcttat aatggttaca
      421 aataaagcaa tagcatcaca aatttcacaa ataaagcatt tttttcactg cattctagtt
      481 gtggtttgtc caaactcatc aatgtatctt atcatgtctg tataccgtcg acctctagct
      541 agagcttggc gtaatcatgg tcatagctgt ttcctgtgtg aaattgttat ccgctcacaa
      601 ttccacacaa catacgagcc ggaagcataa agtgtaaagc ctggggtgcc taatgagtga
      661 gctaactcac attaattgcg ttgcgctcac tgcccgcttt ccagtcggga aacctgtcgt
      721 gccagctgca ttaatgaatc ggccaacgcg cggggagagg cggtttgcgt attgggcgct
      781 cttccgcttc ctcgctcact gactcgctgc gctcggtcgt tcggctgcgg cgagcggtat
      841 cagctcactc aaaggcggta atacggttat ccacagaatc aggggataac gcaggaaaga
      901 acatgtgagc aaaaggccag caaaaggcca ggaaccgtaa aaaggccgcg ttgctggcgt
      961 ttttccatag gctccgcccc cctgacgagc atcacaaaaa tcgacgctca agtcagaggt
     1021 ggcgaaaccc gacaggacta taaagatacc aggcgtttcc ccctggaagc tccctcgtgc
     1081 gctctcctgt tccgaccctg ccgcttaccg gatacctgtc cgcctttctc ccttcgggaa
     1141 gcgtggcgct ttctcatagc tcacgctgta ggtatctcag ttcggtgtag gtcgttcgct
     1201 ccaagctggg ctgtgtgcac gaaccccccg ttcagcccga ccgctgcgcc ttatccggta
     1261 actatcgtct tgagtccaac ccggtaagac acgacttatc gccactggca gcagccactg
     1321 gtaacaggat tagcagagcg aggtatgtag gcggtgctac agagttcttg aagtggtggc
     1381 ctaactacgg ctacactaga agaacagtat ttggtatctg cgctctgctg aagccagtta
     1441 ccttcggaaa aagagttggt agctcttgat ccggcaaaca aaccaccgct ggtagcggtg
     1501 gtttttttgt ttgcaagcag cagattacgc gcagaaaaaa aggatctcaa gaagatcctt
     1561 tgatcttttc tacggggtct gacgctcagt ggaacgaaaa ctcacgttaa gggattttgg
     1621 tcatgagatt atcaaaaagg atcttcacct agatcctttt aaattaaaaa tgaagtttta
     1681 aatcaatcta aagtatatat gagtaaactt ggtctgacag ttaccaatgc ttaatcagtg
     1741 aggcacctat ctcagcgatc tgtctatttc gttcatccat agttgcctga ctccccgtcg
     1801 tgtagataac tacgatacgg gagggcttac catctggccc cagtgctgca atgataccgc
     1861 gagacccacg ctcaccggct ccagatttat cagcaataaa ccagccagcc ggaagggccg
     1921 agcgcagaag tggtcctgca actttatccg cctccatcca gtctattaat tgttgccggg
     1981 aagctagagt aagtagttcg ccagttaata gtttgcgcaa cgttgttgcc attgctacag
     2041 gcatcgtggt gtcacgctcg tcgtttggta tggcttcatt cagctccggt tcccaacgat
     2101 caaggcgagt tacatgatcc cccatgttgt gcaaaaaagc ggttagctcc ttcggtcctc
     2161 cgatcgttgt cagaagtaag ttggccgcag tgttatcact catggttatg gcagcactgc
     2221 ataattctct tactgtcatg ccatccgtaa gatgcttttc tgtgactggt gagtactcaa
     2281 ccaagtcatt ctgagaatag tgtatgcggc gaccgagttg ctcttgcccg gcgtcaatac
     2341 gggataatac cgcgccacat agcagaactt taaaagtgct catcattgga aaacgttctt
     2401 cggggcgaaa actctcaagg atcttaccgc tgttgagatc cagttcgatg taacccactc
     2461 gtgcacccaa ctgatcttca gcatctttta ctttcaccag cgtttctggg tgagcaaaaa
     2521 caggaaggca aaatgccgca aaaaagggaa taagggcgac acggaaatgt tgaatactca
     2581 tactcttcct ttttcaatat tattgaagca tttatcaggg ttattgtctc atgagcggat
     2641 acatatttga atgtatttag aaaaataaac aaataggggt tccgcgcaca tttccccgaa
     2701 aagtgccacc tgacgtcgac ggatcgggag atctcccgat cccctatggt gcactctcag
     2761 tacaatctgc tctgatgccg catagttaag ccagtatctg ctccctgctt gtgtgttgga
     2821 ggtcgctgag tagtgcgcga gcaaaattta agctacaaca aggcaaggct tgaccgacaa
     2881 ttgcatgaag aatctgctta gggttaggcg ttttgcgctg cttcgcgatg tacgggccag
     2941 atatacgcgt tgacattgat tattgactag ttattaatag taatcaatta cggggtcatt
     3001 agttcatagc ccatatatgg agttccgcgt tacataactt acggtaaatg gcccgcctgg
     3061 ctgaccgccc aacgaccccc gcccattgac gtcaataatg acgtatgttc ccatagtaac
     3121 gccaataggg actttccatt gacgtcaatg ggtggagtat ttacggtaaa ctgcccactt
     3181 ggcagtacat caagtgtatc atatgccaag tacgccccct attgacgtca atgacggtaa
     3241 atggcccgcc tggcattatg cccagtacat gaccttatgg gactttccta cttggcagta
     3301 catctacgta ttagtcatcg ctattaccat ggtgatgcgg ttttggcagt acatcaatgg
     3361 gcgtggatag cggtttgact cacggggatt tccaagtctc caccccattg acgtcaatgg
     3421 gagtttgttt tggcaccaaa atcaacggga ctttccaaaa tgtcgtaaca actccgcccc
     3481 attgacgcaa atgggcggta ggcgtgtacg gtgggaggtc tatataagca gagctctccc
     3541 tatcagtgat agagatctcc ctatcagtga tagagatcgt cgacgagctc gtttagtgaa
     3601 ccgtcagatc gcctggagac gccatccacg ctgttttgac ctccatagaa gacaccggga
     3661 ccgatccagc ctccggactc tagcgtttaa acttaagctt ggtaccgagc tcggatccac
     3721 tagtccagtg tggtggaatt ctgcagatat caacaagttt gtacaaaaaa gcaggcttca
     3781 tgggtcgcaa gaagaagaag cagctgaagc cgtggtgctg gtattgtaat agagattttg
     3841 atgatgagaa gatccttatt cagcaccaaa aagcaaagca ttttaaatgc catatatgtc
     3901 acaagaaatt gtatacagga cctggcttag ctattcattg catgcaggta cataaagaaa
     3961 caatagatgc cgtaccaaat gcaatacctg gaagaacaga catagagttg gaaatatatg
     4021 gtatggaagg tattccagaa aaagacatgg atgaaagacg acgacttctt gaacagaaaa
     4081 cacaagaaag tcaaaaaaag aagcaacaag atgattctga tgaatatgat gatgacgact
     4141 ctgcagcctc aacttcattt cagccacagc ctgttcaacc tcagcaaggt tatattcctc
     4201 caatggcaca gccaggactg ccaccagtac caggagcacc aggaatgcct ccaggcatac
     4261 ctccattaat gccaggtgtt cctcctctga tgccaggaat gccaccagtt atgccaggca
     4321 tgccacctgg attgcatcat cagagaaaat acacccagtc attttgcggt gaaaacataa
     4381 tgatgccaat gggtggaatg atgccacctg gaccaggaat accacctctg atgcctggaa
     4441 tgccaccagg tatgccccca cctgttccac gtcctggaat tcctccaatg actcaagcac
     4501 aggctgtttc agcgccaggt attcttaata gaccacctgc accaacagca actgtacctg
     4561 ccccacagcc tccagttact aagcctcttt tccccagtgc tggacagatg gggacacctg
     4621 tcacaagctc aagtacagct tcatccaatt cagaaagtct gtctgcatct tctaaagctc
     4681 tgtttcctag cacagcacaa gctcaggcag ctgtccaagg acctgttggt acagatttca
     4741 aacccttaaa tagtacccct gcaacaacta cagaaccccc aaagcctaca ttccctgctt
     4801 atacacagtc tacagcttca acaactagta caacaaatag tactgcagct aaaccagcgg
     4861 cttcaataac aagtaagcct gctacactta caactacatc cgccacatca aagttgatcc
     4921 atccagatga ggatatatcc ctggaagaga gaagggcaca gttacctaag tatcaacgta
     4981 atcttcctcg gccaggacag gcccccatcg gtaatccacc agttggacca attggaggta
     5041 tgatgccacc acagccaggc atcccacagc aacaaggaat gagaccccca atgccacctc
     5101 atggtcagta tggtggtcat catcaaggca tgccaggata ccttcctggt gctatgcccc
     5161 cgtatgggca gggaccgcca atggtgaacc cagctttctt gtacaaagtg gtgatgggct
     5221 gcaggaattc gatatcaagc ttaggtggaa tggactacaa ggaccacgac ggtgactaca
     5281 aggaccacga catcgactac aaggacgacg acgacaagta gctcgagtct agagggcccg
     5341 tttaaacccg ctgatcagcc tcgactgtgc cttctagttg ccagccatct gttgtttgcc
     5401 cctcccccgt gccttccttg accctggaag gtgccactcc cactgtcctt tcctaataaa
     5461 atgaggaaat tgcatcgcat tgtctgagta ggtgtcattc tattctgggg ggtggggtgg
     5521 ggcaggacag caagggggag gattgggaag acaatagcag gcatgctggg gatgcggtgg
     5581 gctctatggc ttctgaggcg gaaagaacca gctggggctc tagggggtat ccccacgcgc
     5641 cctgtagcgg cgcattaagc gcggcgggtg tggtggttac gcgcagcgtg accgctacac
     5701 ttgccagcgc cctagcgccc gctcctttcg ctttcttccc ttcctttctc gccacgttcg
     5761 ccggctttcc ccgtcaagct ctaaatcggg ggctcccttt agggttccga tttagtgctt
     5821 tacggcacct cgaccccaaa aaacttgatt agggtgatgg ttcacgtacc tagaagttcc
     5881 tattccgaag ttcctattct ctagaaagta taggaacttc cttggccaaa aagcctgaac
     5941 tcaccgcgac gtctgtcgag aagtttctga tcgaaaagtt cgacagcgtc tccgacctga
     6001 tgcagctctc ggagggcgaa gaatctcgtg ctttcagctt cgatgtagga gggcgtggat
     6061 atgtcctgcg ggtaaatagc tgcgccgatg gtttctacaa agatcgttat gtttatcggc
     6121 actttgcatc ggccgcgctc ccgattccgg aagtgcttga cattggggaa ttcagcgaga
     6181 gcctgaccta ttgcatctcc cgccgtgcac agggtgtcac gttgcaagac ctgcctgaaa
     6241 ccgaactgcc cgctgttctg cagccggtcg cggaggccat ggatgcgatc gctgcggccg
     6301 atcttagcca gacgagcggg ttcggcccat tcggaccgca aggaatcggt caatacacta
     6361 catggcgtga tttcatatgc gcgattgctg atccccatgt gtatcactgg caaactgtga
     6421 tggacgacac cgtcagtgcg tccgtcgcgc aggctctcga tgagctgatg ctttgggccg
     6481 aggactgccc cgaagtccgg cacctcgtgc acgcggattt cggctccaac aatgtcctga
     6541 cggacaatgg ccgcataaca gcggtcattg actggagcga ggcgatgttc ggggattccc
     6601 aatacgaggt cgccaacatc ttcttctgga ggccgtggtt ggcttgtatg gagcagcaga
     6661 cgcgctactt cgagcggagg catccggagc
//
