LOCUS       sequence-472514-        4709 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  AiE1419m is an enhancer sequence, designed to drive AAV-mediated 
            transgene expression in striatal Pvalb-Pthlh neurons.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 4709)
  AUTHORS   Hunker AC, Wirthlin ME, Gill G, Johansen NJ, Hooper M, Omstead V, 
            Vargas S, Lerma MN, Taskin N, Weed N, Laird WD, Bishaw YM, Bendrick 
            JL, Gore BB, Ben-Simon Y, Opitz-Araya X, Martinez RA, Way SW, 
            Thyagarajan B, Otto S, Sanchez REA, Alexander JR, Amaya A, Amster A,
            Arbuckle J, Ayala A, Baker PM, Barcelli T, Barta S, Bertagnolli D, 
            Bielstein C, Bishwakarma P, Bowlus J, Boyer G, Brouner K, Casian B, 
            Casper T, Chakka AB, Chakrabarty R, Chong P, Clark M, Colbert K, 
            Daniel S, Dawe T, Departee M, DiValentin P, Donadio NP, Dotson NI, 
            Dwivedi D, Egdorf T, Fliss T, Gary A, Goldy J, Grasso C, Groce EL, 
            Gudsnuk K, Han W, Haradon Z, Hastings S, Helback O, Ho WV, Huang C, 
            Johnson T, Jones DL, Juneau Z, Kenney J, Leibly M, Li S, Liang E, 
            Loeffler H, Lusk NA, Madigan Z, Malloy J, Malone J, McCue R, Melchor
            J, Mich JK, Moosman S, Morin E, Naidoo R, Newman D, Ngo K, Nguyen K,
            Oster AL, Ouellette B, Oyama AA, Pena N, Pham T, Phillips E, Pom C, 
            Potekhina L, Ransford S, Ray PL, Reding M, Rette DF, Reynoldson C, 
            Rimorin C, Sigler AR, Rocha DB, Ronellenfitch K, Ruiz A, Sawyer L, 
            Sevigny JP, Shapovalova NV, Shepard N, Shulga L, Soliman S, Staats 
            B, Taormina MJ, Tieu M, Wang Y, Wilkes J, Wood T, Zhou T, Williford 
            A, Dee N, Mollenkopf T, Ng L, Esposito L, Kalmbach BE, Yao S, Ariza 
            J, Collman F, Mufti S, Smith K, Waters J, Ersing I, Patrick M, Zeng 
            H, Lein ES, Kojima Y, Horwitz G, Owen SF, Levi BP, Daigle TL, Tasic 
            B, Bakken TE, Ting JT
  TITLE     Enhancer AAV toolbox for accessing and perturbing striatal cell 
            types and circuits.
  JOURNAL   Neuron. 2025 May 21;113(10):1507-1524.e17. doi: 
            10.1016/j.neuron.2025.04.035.
  PUBMED    40403704
REFERENCE   2  (bases 1 to 4709)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; doi: 
            "10.1016/j.neuron.2025.04"; journalName: "Neuron"; date: 
            "2025-05-21- 21"; volume: "113"; issue: "10"; pages: "1507-1524.e17"
COMMENT     Sequence Label: AiP15567: pAAV-AiE1419m-minBG-mTFP1-WPRE3-BGHp...
FEATURES             Location/Qualifiers
     source          1..4709
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     regulatory      389..398
                     /label=Kozak sequence
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
                     /regulatory_class="other"
     CDS             395..1105
                     /codon_start=1
                     /product="monomeric teal (cyan) fluorescent protein (Ai et 
                     al., 2006)"
                     /label=mTFP1
                     /note="mammalian codon-optimized"
                     /translation="MVSKGEETTMGVIKPDMKIKLKMEGNVNGHAFVIEGEGEGKPYDG
                     TNTINLEVKEGAPLPFSYDILTTAFAYGNRAFTKYPDDIPNYFKQSFPEGYSWERTMTF
                     EDKGIVKVKSDISMEEDSFIYEIHLKGENFPPNGPVMQKKTTGWDASTERMYVRDGVLK
                     GDVKHKLLLEGGGHHRVDFKTIYRAKKAVKLPDYHFVDHRIEILNHDKDYNKVTVYESA
                     VARNSTDGMDELYK"
     primer_bind     complement(1192..1212)
                     /label=WPRE-R
                     /note="WPRE, reverse primer"
     polyA_signal    1399..1510
                     /label=bGH poly(A) signal
                     /note="bovine growth hormone polyadenylation signal"
     repeat_region   1628..1768
                     /label=AAV2 ITR
                     /note="inverted terminal repeat of adeno-associated virus 
                     serotype 2"
     repeat_region   1628..1757
                     /label=AAV2 ITR
     rep_origin      1843..2298
                     /direction=RIGHT
                     /label=f1 ori
                     /note="f1 bacteriophage origin of replication; arrow 
                     indicates direction of (+) strand synthesis"
     primer_bind     complement(1930..1949)
                     /label=F1ori-R
                     /note="F1 origin, reverse primer"
     primer_bind     2140..2161
                     /label=F1ori-F
                     /note="F1 origin, forward primer"
     primer_bind     complement(2315..2334)
                     /label=pRS-marker
                     /note="pRS vectors, use to sequence yeast selectable 
                     marker"
     primer_bind     2434..2456
                     /label=pGEX 3'
                     /note="pGEX vectors, reverse primer"
     primer_bind     complement(2494..2512)
                     /label=pBRforEco
                     /note="pBR322 vectors, upsteam of EcoRI site, forward 
                     primer"
     promoter        2580..2684
                     /gene="bla"
                     /label=AmpR promoter
     CDS             join(2685..2753,2754..3545)
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     complement(2903..2922)
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
     rep_origin      3716..4304
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     4205..4224
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     repeat_region   4366..4495
                     /label=AAV2 ITR (alternate)
                     /note="Functional equivalent of wild-type AAV2 ITR"
ORIGIN
        1 tgctctcaaa tccgctctat aaagtaggaa gtgtgctgag taccaggcca tccatactga
       61 caaccacagc agatccaccg ccaagcattt ttattgttgc ggcagatggt ggcctgattg
      121 tgaagcgtcc cagagcaagg gtgcccttca acattggaaa ttaatagcta agctactcat
      181 ctcccttcaa atcagaggca atgtcaggct ccgagacaac cttcagggta gtttaactga
      241 gtccggaagc tgccagagca ggacccatgt gggccagcca ctgtccctct ttctgtagct
      301 gactggagct cgggctgggc ataaaagtca gggcagagcc atctattgct tacatttgct
      361 tctgggatcc agatctttcg aagctagcgc caccatggtg agcaagggcg aggagaccac
      421 aatgggcgta atcaagcccg acatgaagat caagctgaag atggagggca acgtgaatgg
      481 ccacgccttc gtgatcgagg gcgagggcga gggcaagccc tacgacggca ccaacaccat
      541 caacctggag gtgaaggagg gagcccccct gcccttctcc tacgacattc tgaccaccgc
      601 gttcgcctac ggcaacaggg ccttcaccaa gtaccccgac gacatcccca actacttcaa
      661 gcagtccttc cccgagggct actcttggga gcgcaccatg accttcgagg acaagggcat
      721 cgtgaaggtg aagtccgaca tctccatgga ggaggactcc ttcatctacg agatacacct
      781 caagggcgag aacttccccc ccaacggccc cgtgatgcag aagaagacca ccggctggga
      841 cgcctccacc gagaggatgt acgtgcgcga cggcgtgctg aagggcgacg tcaagcacaa
      901 gctgctgctg gagggcggcg gccaccaccg cgttgacttc aagaccatct acagggccaa
      961 gaaggcggtg aagctgcccg actatcactt tgtggaccac cgcatcgaga tcctgaacca
     1021 cgacaaggac tacaacaagg tgaccgttta cgagagcgcc gtggcccgca actccaccga
     1081 cggcatggac gagctgtaca agtaatgagg cgcgccgcgg ccgcgaattc gatatcataa
     1141 tcaacctctg gattacaaaa tttgtgaaag attgactggt attcttaact atgttgctcc
     1201 ttttacgcta tgtggatacg ctgctttaat gcctttgtat catgctattg cttcccgtat
     1261 ggctttcatt ttctcctcct tgtataaatc ctggttagtt cttgccacgg cggaactcat
     1321 cgccgcctgc cttgcccgct gctggacagg ggctcggctg ttgggcactg acaattccgt
     1381 ggctcgagag atcttcgact gtgccttcta gttgccagcc atctgttgtt tgcccctccc
     1441 ccgtgccttc cttgaccctg gaaggtgcca ctcccactgt cctttcctaa taaaatgagg
     1501 aaattgcatc gcattgtctg agtaggtgtc attctattct ggggggtggg gtggggcagg
     1561 acagcaaggg ggaggattgg gaagacaata gcaggcatga gatctcacgt gcggaccgag
     1621 cggccgcagg aacccctagt gatggagttg gccactccct ctctgcgcgc tcgctcgctc
     1681 actgaggccg ggcgaccaaa ggtcgcccga cgcccgggct ttgcccgggc ggcctcagtg
     1741 agcgagcgag cgcgcagctg cctgcagggg cgcctgatgc ggtattttct ccttacgcat
     1801 ctgtgcggta tttcacaccg catacgtcaa agcaaccata gtacgcgccc tgtagcggcg
     1861 cattaagcgc ggcgggtgtg gtggttacgc gcagcgtgac cgctacactt gccagcgcct
     1921 tagcgcccgc tcctttcgct ttcttccctt cctttctcgc cacgttcgcc ggctttcccc
     1981 gtcaagctct aaatcggggg ctccctttag ggttccgatt tagtgcttta cggcacctcg
     2041 accccaaaaa acttgatttg ggtgatggtt cacgtagtgg gccatcgccc tgatagacgg
     2101 tttttcgccc tttgacgttg gagtccacgt tctttaatag tggactcttg ttccaaactg
     2161 gaacaacact caactctatc tcgggctatt cttttgattt ataagggatt ttgccgattt
     2221 cggtctattg gttaaaaaat gagctgattt aacaaaaatt taacgcgaat tttaacaaaa
     2281 tattaacgtt tacaatttta tggtgcactc tcagtacaat ctgctctgat gccgcatagt
     2341 taagccagcc ccgacacccg ccaacacccg ctgacgcgcc ctgacgggct tgtctgctcc
     2401 cggcatccgc ttacagacaa gctgtgaccg tctccgggag ctgcatgtgt cagaggtttt
     2461 caccgtcatc accgaaacgc gcgagacgaa agggcctcgt gatacgccta tttttatagg
     2521 ttaatgtcat gataataatg gtttcttaga cgtcaggtgg cacttttcgg ggaaatgtgc
     2581 gcggaacccc tatttgttta tttttctaaa tacattcaaa tatgtatccg ctcatgagac
     2641 aataaccctg ataaatgctt caataatatt gaaaaaggaa gagtatgagt attcaacatt
     2701 tccgtgtcgc ccttattccc ttttttgcgg cattttgcct tcctgttttt gctcacccag
     2761 aaacgctggt gaaagtaaaa gatgctgaag atcagttggg tgcacgagtg ggttacatcg
     2821 aactggatct caacagcggt aagatccttg agagttttcg ccccgaagaa cgttttccaa
     2881 tgatgagcac ttttaaagtt ctgctatgtg gcgcggtatt atcccgtatt gacgccgggc
     2941 aagagcaact cggtcgccgc atacactatt ctcagaatga cttggttgag tactcaccag
     3001 tcacagaaaa gcatcttacg gatggcatga cagtaagaga attatgcagt gctgccataa
     3061 ccatgagtga taacactgcg gccaacttac ttctgacaac gatcggagga ccgaaggagc
     3121 taaccgcttt tttgcacaac atgggggatc atgtaactcg ccttgatcgt tgggaaccgg
     3181 agctgaatga agccatacca aacgacgagc gtgacaccac gatgcctgta gcaatggcaa
     3241 caacgttgcg caaactatta actggcgaac tacttactct agcttcccgg caacaattaa
     3301 tagactggat ggaggcggat aaagttgcag gaccacttct gcgctcggcc cttccggctg
     3361 gctggtttat tgctgataaa tctggagccg gtgagcgtgg gtctcgcggt atcattgcag
     3421 cactggggcc agatggtaag ccctcccgta tcgtagttat ctacacgacg gggagtcagg
     3481 caactatgga tgaacgaaat agacagatcg ctgagatagg tgcctcactg attaagcatt
     3541 ggtaactgtc agaccaagtt tactcatata tactttagat tgatttaaaa cttcattttt
     3601 aatttaaaag gatctaggtg aagatccttt ttgataatct catgaccaaa atcccttaac
     3661 gtgagttttc gttccactga gcgtcagacc ccgtagaaaa gatcaaagga tcttcttgag
     3721 atcctttttt tctgcgcgta atctgctgct tgcaaacaaa aaaaccaccg ctaccagcgg
     3781 tggtttgttt gccggatcaa gagctaccaa ctctttttcc gaaggtaact ggcttcagca
     3841 gagcgcagat accaaatact gttcttctag tgtagccgta gttaggccac cacttcaaga
     3901 actctgtagc accgcctaca tacctcgctc tgctaatcct gttaccagtg gctgctgcca
     3961 gtggcgataa gtcgtgtctt accgggttgg actcaagacg atagttaccg gataaggcgc
     4021 agcggtcggg ctgaacgggg ggttcgtgca cacagcccag cttggagcga acgacctaca
     4081 ccgaactgag atacctacag cgtgagctat gagaaagcgc cacgcttccc gaagggagaa
     4141 aggcggacag gtatccggta agcggcaggg tcggaacagg agagcgcacg agggagcttc
     4201 cagggggaaa cgcctggtat ctttatagtc ctgtcgggtt tcgccacctc tgacttgagc
     4261 gtcgattttt gtgatgctcg tcaggggggc ggagcctatg gaaaaacgcc agcaacgcgg
     4321 cctttttacg gttcctggcc ttttgctggc cttttgctca catgtcctgc aggcagctgc
     4381 gcgctcgctc gctcactgag gccgcccggg cgtcgggcga cctttggtcg cccggcctca
     4441 gtgagcgagc gagcgcgcag agagggagtg gccaactcca tcactagggg ttcctgcggc
     4501 cgcacgcgta acttgacagt ggtgggcaaa agtaaaactt gaaagacaaa acttggaagt
     4561 gctggaactg taactccaga ggtctctgag agagcctggc ttcgagaact ctttaactcc
     4621 ctcttctcag cctctgagca gcaaacccag cacagctgtt ctcgctgtaa agggcagcta
     4681 tgcagggcag agttcccaga aggcttcta
//
