LOCUS       sequence-488139-        7524 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  Express mEGFP-tagged intrinsically disordered protein (IDR), 
            FOidr_116, derived from human fusion protein NPTN_CLUAP1.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 7524)
  AUTHORS   Maiti S, Tripathi S, Baggett DW, Phillips AH, Park CG, Wang J, 
            Wahiduzzaman, Freyaldenhoven WT, Kinger S, Pioso BJ, Bollinger JC, 
            Somjee R, Lang B, Babu MM, Kriwacki RW
  TITLE     Proteome-wide computational analyses reveal links between protein 
            condensate formation and RNA biology.
  JOURNAL   Sci Adv. 2025 Dec 5;11(49):eady1420. doi: 10.1126/sciadv.ady1420. 
            Epub 2025 Dec 3.
  PUBMED    41337585
REFERENCE   2  (bases 1 to 7524)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; journalName: "Sci Adv."; 
            date: "2025-12-5"; volume: "11(49):eady1420. doi"; pages: " 
            10.1126/sciadv.ady1420. Epub 2025 Dec 3"
COMMENT     Sequence Label: CL20_mEGFP_FOidr_116
FEATURES             Location/Qualifiers
     source          1..7524
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     primer_bind     181..200
                     /label=rbglobpA-R
                     /note="Rabbit beta-globin polyA, reverse primer. Also 
                     called rb-glob-pA-term-R"
     polyA_signal    199..254
                     /label=beta-globin poly(A) signal
                     /note="rabbit beta-globin polyadenylation signal (Gil and 
                     Proudfoot, 1987)"
     primer_bind     300..319
                     /label=Bglob-pA-R
                     /note="Rabbit beta-globin polyA region, reverse primer"
     CDS             complement(join(1057..1767,1768..1770,1771..1773))
                     /codon_start=1
                     /product="enhanced GFP with monomerizing A206K mutation 
                     (Zacharias et al., 2002)"
                     /label=mEGFP
                     /note="mammalian codon-optimized"
                     /translation="MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTL
                     KFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDD
                     GNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIK
                     VNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLL
                     EFVTAAGITLGMDELYK"
     primer_bind     complement(1099..1120)
                     /label=EGFP-C
                     /note="EGFP, forward primer"
     primer_bind     1448..1467
                     /label=EXFP-R
                     /note="For distinguishing EGFP variants, reverse primer"
     primer_bind     1707..1728
                     /label=EGFP-N
                     /note="EGFP, reverse primer"
     regulatory      1770..1779
                     /label=Kozak sequence
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
                     /regulatory_class="other"
     promoter        complement(1855..2058)
                     /label=CMV promoter
                     /note="human cytomegalovirus (CMV) immediate early 
                     promoter"
     primer_bind     complement(1884..1904)
                     /label=CMV-F
                     /note="Human CMV immediate early promoter, forward primer"
     enhancer        2059..2362
                     /label=CMV enhancer
                     /note="human cytomegalovirus immediate early enhancer"
     CDS             complement(2619..2663)
                     /codon_start=1
                     /product="antigenic peptide corresponding to amino acids 
                     655 to 669 of the HIV envelope protein gp41 (Lutje Hulsik 
                     et al., 2013)"
                     /label=gp41 peptide
                     /note="recognized by the 2H10 single-chain llama nanobody"
                     /translation="KNEQELLELDKWASL"
     misc_feature    2848..3081
                     /label=RRE
                     /note="The Rev response element (RRE) of HIV-1 allows for 
                     Rev-dependent mRNA export from the nucleus to the 
                     cytoplasm."
     misc_feature    3441..3558
                     /label=cPPT/CTS
                     /note="central polypurine tract and central termination 
                     sequence of HIV-1"
     misc_feature    4050..4175
                     /label=HIV-1 Psi
                     /note="packaging signal of human immunodeficiency virus 
                     type 1"
     LTR             4222..4479
                     /label=5' LTR (truncated)
                     /note="truncated 5' long terminal repeat (LTR) from HIV-1"
     enhancer        4481..4860
                     /label=CMV enhancer
                     /note="human cytomegalovirus immediate early enhancer"
     promoter        4891..4995
                     /gene="bla"
                     /label=AmpR promoter
     CDS             join(4996..5064,5065..5856)
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     complement(5214..5233)
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
     rep_origin      6027..6615
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     6516..6535
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     primer_bind     6769..6786
                     /label=L4440
                     /note="L4440 vector, forward primer"
     polyA_signal    6854..6988
                     /label=SV40 poly(A) signal
                     /note="SV40 polyadenylation signal"
     primer_bind     complement(6878..6897)
                     /label=EBV-rev
                     /note="SV40 polyA terminator, reverse primer"
     primer_bind     6932..6951
                     /label=SV40pA-R
                     /note="SV40 polyA, reverse primer"
     promoter        complement(6994..7189)
                     /label=SV40 promoter
                     /note="SV40 early promoter"
     rep_origin      7008..7143
                     /label=SV40 ori
                     /note="SV40 origin of replication"
     protein_bind    7248..7269
                     /label=CAP binding site
                     /bound_moiety="E. coli catabolite activator protein"
                     /note="CAP binding activates transcription in the presence 
                     of cAMP."
     promoter        join(7284..7289,7290..7307,7308..7314)
                     /label=lac promoter
                     /note="promoter for the E. coli lac operon"
     protein_bind    7322..7338
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     primer_bind     7327..7349
                     /label=M13/pUC Reverse
                     /note="In lacZ gene"
     primer_bind     7346..7362
                     /label=M13 rev
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     7346..7362
                     /label=M13 Reverse
                     /note="In lacZ gene. Also called M13-rev"
ORIGIN
        1 aaaaaaaatc taacctcaag tcaaggcttt tctatggaat aaggaatgga cagcaggggg
       61 ctgtttcata tactgatgac ctctttatag ccaacctttg ttcatggcag ccagcatatg
      121 ggcatatgtt gccaaactct aaaccaaata ctcattctga tgttttaaat gatttgccct
      181 cccatatgtc cttccgagtg agagacacaa aaaattccaa cacactattg caatgaaaat
      241 aaatttcctt tattagccag aagtcagatg ctcaaggggc ttcatgatgt ccccataatt
      301 tttggcagag ggaaaaagat ctgctagctc gagcagctga agctttattg aggcttaagc
      361 agtgggttcc ctagttagcc agagagctcc caggctcaga tctggtctaa ccagagagac
      421 ccagtacagg caaaaagcag atcttgtctt ctttgggagt gaattagccc ttccagtccc
      481 cccttttctt ttaaaaagtg gctaagatct acagctgcct tgtaagtcat tggtcttaaa
      541 ggtaccgtaa tcttatctag aaccggttca gaagtcattg tcactctcat ctaacggttc
      601 agatttgcgg acacggcggt taggtttagt cggacttaaa ctaatcgatt cgtcctccag
      661 gtcgtcatct tcatcatcgt cgtcctccat atcaatctct gactcttccg agtcttcgtt
      721 atcatcggag tcgccgcctt gcatagtacc gacaatgcgc ttcccagggc gtccctgcat
      781 caacatctcc atcgcggttt gcggttttgg caaacggcgt tcttctaact cactgtcaga
      841 ttcatcgtct tcctgaatat cgatgtcaga gtcgtcattt cctttaactt cgatggtcgc
      901 attcgccttc ggtgcactga cgaagtgata tacgcagtga tactcgccgc tgtcttcggc
      961 gcggggtttg ttgatgcgat attccatatt agaagcattc ttacgtgttg cactccggga
     1021 agcggccgca cttcccccgg agcctccgct tccgcccttg tacagctcgt ccatgccgag
     1081 agtgatcccg gcggcggtca cgaactccag caggaccatg tgatcgcgct tctcgttggg
     1141 gtctttgctc agcttggact gggtgctcag gtagtggttg tcgggcagca gcacggggcc
     1201 gtcgccgatg ggggtgttct gctggtagtg gtcggcgagc tgcacgctgc cgtcctcgat
     1261 gttgtggcgg atcttgaagt tcaccttgat gccgttcttc tgcttgtcgg ccatgatata
     1321 gacgttgtgg ctgttgtagt tgtactccag cttgtgcccc aggatgttgc cgtcctcctt
     1381 gaagtcgatg cccttcagct cgatgcggtt caccagggtg tcgccctcga acttcacctc
     1441 ggcgcgggtc ttgtagttgc cgtcgtcctt gaagaagatg gtgcgctcct ggacgtagcc
     1501 ttcgggcatg gcggacttga agaagtcgtg ctgcttcatg tggtcggggt agcggctgaa
     1561 gcactgcacg ccgtaggtca gggtggtcac gagggtgggc cagggcacgg gcagcttgcc
     1621 ggtggtgcag atgaacttca gggtcagctt gccgtaggtg gcatcgccct cgccctcgcc
     1681 ggacacgctg aacttgtggc cgtttacgtc gccgtccagc tcgaccagga tgggcaccac
     1741 cccggtgaac agctcctcgc ccttgctcac catggtggcg accggtggat cccgggcccg
     1801 cggtaccgtc gactgcagaa ttcggttcac taaacgagcc cggttcacta aacgagctct
     1861 gcttatatag acctcccacc gtacacgcct accgcccatt tgcgtcaatg gggcggagtt
     1921 gttacgacat tttggaaagt cccgttgatt ttggtgccaa aacaaactcc cattgacgtc
     1981 aatggggtgg agacttggaa atccccgtga gtcaaaccgc tatccacgcc cattgatgta
     2041 ctgccaaaac cgcatcacca tggtaatagc gatgactaat acgtagatgt actgccaagt
     2101 aggaaagtcc cataaggtca tgtactgggc ataatgccag gcgggccatt taccgtcatt
     2161 gacgtcaata gggggcgtac ttggcatatg atacacttga tgtactgcca agtgggcagt
     2221 ttaccgtaaa tactccaccc attgacgtca atggaaagtc cctattggcg ttactatggg
     2281 aacatacgtc attattgacg tcaatgggcg ggggtcgttg ggcggtcagc caggcgggcc
     2341 atttaccgta agttatgtaa cgcggaactc catatatggg ctatgaacta atgaccccgt
     2401 aattgattac tattaataac tagcacgcgt tcgaagcttg agctcggtcc cctcggggtt
     2461 gggaggtggg tctgaaacga taatggtgaa tatccctgcc taactctatt cactatagaa
     2521 agtacagcaa aaactattct taaacctacc aagcctccta ctatcattat gaataatttt
     2581 atataccaca gccaatttgt tatgttaaac caattccaca aacttgccca tttatctaat
     2641 tccaataatt cttgttcatt cttttcttgc tggttttgcg attcttcaat taaggagtgt
     2701 attaagcttg tgtaattgtt aatttctctg tcccactcca tccaggtcgt gtgattccaa
     2761 atctgttcca gagatttatt actccaacta gcattccaag gcacagcagt ggtgcaaatg
     2821 agttttccag agcaacccca aatccccagg agctgttgat cctttaggta tctttccaca
     2881 gccaggattc ttgcctggag ctgcttgatg ccccagactg tgagttgcaa cagatgctgt
     2941 tgcgcctcaa tagccctcag caaattgttc tgctgctgca ctataccaga caataattgt
     3001 ctggcctgta ccgtcagcgt cattgacgct gcgcccatag tgcttcctgc tgctcccaag
     3061 aacccaagga acaaagctcc tattcccact gctctttttt ctctctgcac cactcttctc
     3121 tttgccttgg tgggtgctac tcctaatggt tcaattttta ctactttata tttatataat
     3181 tcacttctcc aattgtccct catatctcct ccttatggtg ttttactaaa cttttccatg
     3241 ttctaatcct catcctgtct acttgccaca caatcatcac ctgccatctg ttttccataa
     3301 tccctaatga tctttgcttt tcttcttggc actactttta tgtcactatt atcttgtatt
     3361 actactgccc cttcaccttt ccagaggagc tttgctggtc ctttccaaag tggatttctg
     3421 ctgtccctgt aataaacccg aaaattttga atttttgtaa tttgtttttg taattcttta
     3481 gtttgtatgt ctgttgctat tatgtctact attctttccc ctgcactgta ccccccaatc
     3541 cccccttttc ttttaaaatt gtggatgaat actgccattt gtactgctgt cttaagatgt
     3601 tcagcctgat ctcttacctg tcctataatt ttctttaatt ctttattcat agattctact
     3661 actccttgac tttggggatt gtagggaatt tccaggtctg aagatcctgc tgcttgctgt
     3721 gcttttttct tacttttgtt ttgctcttcc tctatcttgt ctaaagcttc cttggtgtct
     3781 tttatctcta tcctttgatg cacacaatag agggttgcta ctgtattata taatgatcta
     3841 agttcttctg atcctgtctg aagggatggt tgtagctgtc ccagtatttg tctacagcct
     3901 tctgatgttt ctaacaggcc agtattaact gcgaatcgtt ctagctccct gcttgcccat
     3961 actatatgtt ttaatttata ttttttcttt ccccctggcc ttaaccgaat tttttcccat
     4021 cgcgatctaa ttctcccccg cttaatactg acgctctcgc acccatctct ctccttctag
     4081 cctccgctag tcaaaatttt tggcgtactc accagtcgcc gcccctcgcc tcttgccgtg
     4141 cgcgcttcag caagccgagt cctgcgtcga gagagctcct ctggtttccc tttcgctttc
     4201 aagtccctgt tcgggcgcca ctgctagaga ttttccacac tgactaaaag ggtctgaggg
     4261 atctctagtt accagagtca cacaacagac gggcacacac tacttgaagc actcaaggca
     4321 agctttattg aggcttaagc agtgggttcc ctagttagcc agagagctcc caggctcaga
     4381 tctggtctaa ccagagagac ccagtacagg caaaaagcag ctgcttatat gcaggatctg
     4441 agggctcgcc actccccagt cccgcccagg ccacgcctcc catggtaata gcgatgacta
     4501 atacgtagat gtactgccaa gtaggaaagt cccataaggt catgtactgg gcataatgcc
     4561 aggcgggcca tttaccgtca ttgacgtcaa tagggggcgt acttggcata tgatacactt
     4621 gatgtactgc caagtgggca gtttaccgta aatactccac ccattgacgt caatggaaag
     4681 tccctattgg cgttactatg ggaacatacg tcattattga cgtcaatggg cgggggtcgt
     4741 tgggcggtca gccaggcggg ccatttaccg taagttatgt aacgcggaac tccatatatg
     4801 ggctatgaac taatgacccc gtaattgatt actattaata actagtcaat aatcaatgtc
     4861 gacccaggtg gcacttttcg gggaaatgtg cgcggaaccc ctatttgttt atttttctaa
     4921 atacattcaa atatgtatcc gctcatgaga caataaccct gataaatgct tcaataatat
     4981 tgaaaaagga agagtatgag tattcaacat ttccgtgtcg cccttattcc cttttttgcg
     5041 gcattttgcc ttcctgtttt tgctcaccca gaaacgctgg tgaaagtaaa agatgctgaa
     5101 gatcagttgg gtgcacgagt gggttacatc gaactggatc tcaacagcgg taagatcctt
     5161 gagagttttc gccccgaaga acgttttcca atgatgagca cttttaaagt tctgctatgt
     5221 ggcgcggtat tatcccgtat tgacgccggg caagagcaac tcggtcgccg catacactat
     5281 tctcagaatg acttggttga gtactcacca gtcacagaaa agcatcttac ggatggcatg
     5341 acagtaagag aattatgcag tgctgccata accatgagtg ataacactgc ggccaactta
     5401 cttctgacaa cgatcggagg accgaaggag ctaaccgctt ttttgcacaa catgggggat
     5461 catgtaactc gccttgatcg ttgggaaccg gagctgaatg aagccatacc aaacgacgag
     5521 cgtgacacca cgatgcctgt agcaatggca acaacgttgc gcaaactatt aactggcgaa
     5581 ctacttactc tagcttcccg gcaacaatta atagactgga tggaggcgga taaagttgca
     5641 ggaccacttc tgcgctcggc ccttccggct ggctggttta ttgctgataa atctggagcc
     5701 ggtgagcgtg ggtctcgcgg tatcattgca gcactggggc cagatggtaa gccctcccgt
     5761 atcgtagtta tctacacgac ggggagtcag gcaactatgg atgaacgaaa tagacagatc
     5821 gctgagatag gtgcctcact gattaagcat tggtaactgt cagaccaagt ttactcatat
     5881 atactttaga ttgatttaaa acttcatttt taatttaaaa ggatctaggt gaagatcctt
     5941 tttgataatc tcatgaccaa aatcccttaa cgtgagtttt cgttccactg agcgtcagac
     6001 cccgtagaaa agatcaaagg atcttcttga gatccttttt ttctgcgcgt aatctgctgc
     6061 ttgcaaacaa aaaaaccacc gctaccagcg gtggtttgtt tgccggatca agagctacca
     6121 actctttttc cgaaggtaac tggcttcagc agagcgcaga taccaaatac tgttcttcta
     6181 gtgtagccgt agttaggcca ccacttcaag aactctgtag caccgcctac atacctcgct
     6241 ctgctaatcc tgttaccagt ggctgctgcc agtggcgata agtcgtgtct taccgggttg
     6301 gactcaagac gatagttacc ggataaggcg cagcggtcgg gctgaacggg gggttcgtgc
     6361 acacagccca gcttggagcg aacgacctac accgaactga gatacctaca gcgtgagcta
     6421 tgagaaagcg ccacgcttcc cgaagggaga aaggcggaca ggtatccggt aagcggcagg
     6481 gtcggaacag gagagcgcac gagggagctt ccagggggaa acgcctggta tctttatagt
     6541 cctgtcgggt ttcgccacct ctgacttgag cgtcgatttt tgtgatgctc gtcagggggg
     6601 cggagcctat ggaaaaacgc cagcaacgcg gcctttttac ggttcctggc cttttgctgg
     6661 ccttttgctc acatgttctt tcctgcgtta tcccctgctt ctgtggataa ccgtattacc
     6721 gcctttgagt gagctgatac cgctcgccgc agccgaacga ccgagcgcag cgagtcagtg
     6781 agcgaggaag cggaagagcg cccaatacgc aaaccgcctc tccccgcgcg ttggccgatt
     6841 cattaatgca gcggatccag acatgataag atacattgat gagtttggac aaaccacaac
     6901 tagaatgcag tgaaaaaaat gctttatttg tgaaatttgt gatgctattg ctttatttgt
     6961 aaccattata agctgcaata aacaagttag ctttttgcaa aagcctaggc ctccaaaaaa
     7021 gcctcctcac tacttctgga atagctcaga ggccgaggcg gcctcggcct ctgcataaat
     7081 aaaaaaaatt agtcagccat ggggcggaga atgggcggaa ctgggcggag ttaggggcgg
     7141 gatgggcgga gttaggggcg ggactatggt tgctgactaa ttgagatgcg gatccgctgg
     7201 cacgacaggt ttcccgactg gaaagcgggc agtgagcgca acgcaattaa tgtgagttag
     7261 ctcactcatt aggcacccca ggctttacac tttatgcttc cggctcgtat gttgtgtgga
     7321 attgtgagcg gataacaatt tcacacagga aacagctatg accatgatta cgccaagctt
     7381 gggctgcagg tcgagggatc tccataagag aagagggaca gctatgactg ggagtagtca
     7441 ggagaggagg aaaaatctgg ctagtaaaac atgtaaggaa aattttaggg atgttaaaga
     7501 aaaaaataac acaaaacaaa atat
//
