LOCUS       sequence-488152-        7359 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  Express mEGFP-tagged intrinsically disordered protein (IDR), 
            FOidr_129, derived from human fusion protein PAX5_BZW1; 
            PAX5_CBFA2T3; PAX5_FOXP1; PAX5_JAK2; PAX5_NCOA5; PAX5_NOL4L; 
            PAX5_PAX5; PAX5_ZCCHC7; PAX5_ZNF521; ZCCHC7_PAX5.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 7359)
  AUTHORS   Maiti S, Tripathi S, Baggett DW, Phillips AH, Park CG, Wang J, 
            Wahiduzzaman, Freyaldenhoven WT, Kinger S, Pioso BJ, Bollinger JC, 
            Somjee R, Lang B, Babu MM, Kriwacki RW
  TITLE     Proteome-wide computational analyses reveal links between protein 
            condensate formation and RNA biology.
  JOURNAL   Sci Adv. 2025 Dec 5;11(49):eady1420. doi: 10.1126/sciadv.ady1420. 
            Epub 2025 Dec 3.
  PUBMED    41337585
REFERENCE   2  (bases 1 to 7359)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; journalName: "Sci Adv."; 
            date: "2025-12-5"; volume: "11(49):eady1420. doi"; pages: " 
            10.1126/sciadv.ady1420. Epub 2025 Dec 3"
COMMENT     Sequence Label: CL20_mEGFP_FOidr_129
FEATURES             Location/Qualifiers
     source          1..7359
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     primer_bind     181..200
                     /label=rbglobpA-R
                     /note="Rabbit beta-globin polyA, reverse primer. Also 
                     called rb-glob-pA-term-R"
     polyA_signal    199..254
                     /label=beta-globin poly(A) signal
                     /note="rabbit beta-globin polyadenylation signal (Gil and 
                     Proudfoot, 1987)"
     primer_bind     300..319
                     /label=Bglob-pA-R
                     /note="Rabbit beta-globin polyA region, reverse primer"
     CDS             complement(join(892..1602,1603..1605,1606..1608))
                     /codon_start=1
                     /product="enhanced GFP with monomerizing A206K mutation 
                     (Zacharias et al., 2002)"
                     /label=mEGFP
                     /note="mammalian codon-optimized"
                     /translation="MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTL
                     KFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDD
                     GNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIK
                     VNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLL
                     EFVTAAGITLGMDELYK"
     primer_bind     complement(934..955)
                     /label=EGFP-C
                     /note="EGFP, forward primer"
     primer_bind     1283..1302
                     /label=EXFP-R
                     /note="For distinguishing EGFP variants, reverse primer"
     primer_bind     1542..1563
                     /label=EGFP-N
                     /note="EGFP, reverse primer"
     regulatory      1605..1614
                     /label=Kozak sequence
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
                     /regulatory_class="other"
     promoter        complement(1690..1893)
                     /label=CMV promoter
                     /note="human cytomegalovirus (CMV) immediate early 
                     promoter"
     primer_bind     complement(1719..1739)
                     /label=CMV-F
                     /note="Human CMV immediate early promoter, forward primer"
     enhancer        1894..2197
                     /label=CMV enhancer
                     /note="human cytomegalovirus immediate early enhancer"
     CDS             complement(2454..2498)
                     /codon_start=1
                     /product="antigenic peptide corresponding to amino acids 
                     655 to 669 of the HIV envelope protein gp41 (Lutje Hulsik 
                     et al., 2013)"
                     /label=gp41 peptide
                     /note="recognized by the 2H10 single-chain llama nanobody"
                     /translation="KNEQELLELDKWASL"
     misc_feature    2683..2916
                     /label=RRE
                     /note="The Rev response element (RRE) of HIV-1 allows for 
                     Rev-dependent mRNA export from the nucleus to the 
                     cytoplasm."
     misc_feature    3276..3393
                     /label=cPPT/CTS
                     /note="central polypurine tract and central termination 
                     sequence of HIV-1"
     misc_feature    3885..4010
                     /label=HIV-1 Psi
                     /note="packaging signal of human immunodeficiency virus 
                     type 1"
     LTR             4057..4314
                     /label=5' LTR (truncated)
                     /note="truncated 5' long terminal repeat (LTR) from HIV-1"
     enhancer        4316..4695
                     /label=CMV enhancer
                     /note="human cytomegalovirus immediate early enhancer"
     promoter        4726..4830
                     /gene="bla"
                     /label=AmpR promoter
     CDS             join(4831..4899,4900..5691)
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     complement(5049..5068)
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
     rep_origin      5862..6450
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     6351..6370
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     primer_bind     6604..6621
                     /label=L4440
                     /note="L4440 vector, forward primer"
     polyA_signal    6689..6823
                     /label=SV40 poly(A) signal
                     /note="SV40 polyadenylation signal"
     primer_bind     complement(6713..6732)
                     /label=EBV-rev
                     /note="SV40 polyA terminator, reverse primer"
     primer_bind     6767..6786
                     /label=SV40pA-R
                     /note="SV40 polyA, reverse primer"
     promoter        complement(6829..7024)
                     /label=SV40 promoter
                     /note="SV40 early promoter"
     rep_origin      6843..6978
                     /label=SV40 ori
                     /note="SV40 origin of replication"
     protein_bind    7083..7104
                     /label=CAP binding site
                     /bound_moiety="E. coli catabolite activator protein"
                     /note="CAP binding activates transcription in the presence 
                     of cAMP."
     promoter        join(7119..7124,7125..7142,7143..7149)
                     /label=lac promoter
                     /note="promoter for the E. coli lac operon"
     protein_bind    7157..7173
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     primer_bind     7162..7184
                     /label=M13/pUC Reverse
                     /note="In lacZ gene"
     primer_bind     7181..7197
                     /label=M13 rev
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     7181..7197
                     /label=M13 Reverse
                     /note="In lacZ gene. Also called M13-rev"
ORIGIN
        1 aaaaaaaatc taacctcaag tcaaggcttt tctatggaat aaggaatgga cagcaggggg
       61 ctgtttcata tactgatgac ctctttatag ccaacctttg ttcatggcag ccagcatatg
      121 ggcatatgtt gccaaactct aaaccaaata ctcattctga tgttttaaat gatttgccct
      181 cccatatgtc cttccgagtg agagacacaa aaaattccaa cacactattg caatgaaaat
      241 aaatttcctt tattagccag aagtcagatg ctcaaggggc ttcatgatgt ccccataatt
      301 tttggcagag ggaaaaagat ctgctagctc gagcagctga agctttattg aggcttaagc
      361 agtgggttcc ctagttagcc agagagctcc caggctcaga tctggtctaa ccagagagac
      421 ccagtacagg caaaaagcag atcttgtctt ctttgggagt gaattagccc ttccagtccc
      481 cccttttctt ttaaaaagtg gctaagatct acagctgcct tgtaagtcat tggtcttaaa
      541 ggtaccgtaa tcttatctag aaccggttca cccacgcatc tgtttgcgca aaaaatcgcg
      601 acctggaaga gagtgtccat tcggaaccgg cgactcctga ataccttcat cgcgtttgcg
      661 tttattcgtg tctgcgctcg gagatgtaat tcccaggata ccgctgatgg agtagctaga
      721 cccagccgag tccgtactta cactgctaac ctgggtaaca gaaccagtac ttacaatgct
      781 gtgtgaggag gcgggaacag gctgattagg tggctgctgt actttcgtgc gaataatacg
      841 gttgatcgac cgggaagcgg ccgcacttcc cccggagcct ccgcttccgc ccttgtacag
      901 ctcgtccatg ccgagagtga tcccggcggc ggtcacgaac tccagcagga ccatgtgatc
      961 gcgcttctcg ttggggtctt tgctcagctt ggactgggtg ctcaggtagt ggttgtcggg
     1021 cagcagcacg gggccgtcgc cgatgggggt gttctgctgg tagtggtcgg cgagctgcac
     1081 gctgccgtcc tcgatgttgt ggcggatctt gaagttcacc ttgatgccgt tcttctgctt
     1141 gtcggccatg atatagacgt tgtggctgtt gtagttgtac tccagcttgt gccccaggat
     1201 gttgccgtcc tccttgaagt cgatgccctt cagctcgatg cggttcacca gggtgtcgcc
     1261 ctcgaacttc acctcggcgc gggtcttgta gttgccgtcg tccttgaaga agatggtgcg
     1321 ctcctggacg tagccttcgg gcatggcgga cttgaagaag tcgtgctgct tcatgtggtc
     1381 ggggtagcgg ctgaagcact gcacgccgta ggtcagggtg gtcacgaggg tgggccaggg
     1441 cacgggcagc ttgccggtgg tgcagatgaa cttcagggtc agcttgccgt aggtggcatc
     1501 gccctcgccc tcgccggaca cgctgaactt gtggccgttt acgtcgccgt ccagctcgac
     1561 caggatgggc accaccccgg tgaacagctc ctcgcccttg ctcaccatgg tggcgaccgg
     1621 tggatcccgg gcccgcggta ccgtcgactg cagaattcgg ttcactaaac gagcccggtt
     1681 cactaaacga gctctgctta tatagacctc ccaccgtaca cgcctaccgc ccatttgcgt
     1741 caatggggcg gagttgttac gacattttgg aaagtcccgt tgattttggt gccaaaacaa
     1801 actcccattg acgtcaatgg ggtggagact tggaaatccc cgtgagtcaa accgctatcc
     1861 acgcccattg atgtactgcc aaaaccgcat caccatggta atagcgatga ctaatacgta
     1921 gatgtactgc caagtaggaa agtcccataa ggtcatgtac tgggcataat gccaggcggg
     1981 ccatttaccg tcattgacgt caataggggg cgtacttggc atatgataca cttgatgtac
     2041 tgccaagtgg gcagtttacc gtaaatactc cacccattga cgtcaatgga aagtccctat
     2101 tggcgttact atgggaacat acgtcattat tgacgtcaat gggcgggggt cgttgggcgg
     2161 tcagccaggc gggccattta ccgtaagtta tgtaacgcgg aactccatat atgggctatg
     2221 aactaatgac cccgtaattg attactatta ataactagca cgcgttcgaa gcttgagctc
     2281 ggtcccctcg gggttgggag gtgggtctga aacgataatg gtgaatatcc ctgcctaact
     2341 ctattcacta tagaaagtac agcaaaaact attcttaaac ctaccaagcc tcctactatc
     2401 attatgaata attttatata ccacagccaa tttgttatgt taaaccaatt ccacaaactt
     2461 gcccatttat ctaattccaa taattcttgt tcattctttt cttgctggtt ttgcgattct
     2521 tcaattaagg agtgtattaa gcttgtgtaa ttgttaattt ctctgtccca ctccatccag
     2581 gtcgtgtgat tccaaatctg ttccagagat ttattactcc aactagcatt ccaaggcaca
     2641 gcagtggtgc aaatgagttt tccagagcaa ccccaaatcc ccaggagctg ttgatccttt
     2701 aggtatcttt ccacagccag gattcttgcc tggagctgct tgatgcccca gactgtgagt
     2761 tgcaacagat gctgttgcgc ctcaatagcc ctcagcaaat tgttctgctg ctgcactata
     2821 ccagacaata attgtctggc ctgtaccgtc agcgtcattg acgctgcgcc catagtgctt
     2881 cctgctgctc ccaagaaccc aaggaacaaa gctcctattc ccactgctct tttttctctc
     2941 tgcaccactc ttctctttgc cttggtgggt gctactccta atggttcaat ttttactact
     3001 ttatatttat ataattcact tctccaattg tccctcatat ctcctcctta tggtgtttta
     3061 ctaaactttt ccatgttcta atcctcatcc tgtctacttg ccacacaatc atcacctgcc
     3121 atctgttttc cataatccct aatgatcttt gcttttcttc ttggcactac ttttatgtca
     3181 ctattatctt gtattactac tgccccttca cctttccaga ggagctttgc tggtcctttc
     3241 caaagtggat ttctgctgtc cctgtaataa acccgaaaat tttgaatttt tgtaatttgt
     3301 ttttgtaatt ctttagtttg tatgtctgtt gctattatgt ctactattct ttcccctgca
     3361 ctgtaccccc caatcccccc ttttctttta aaattgtgga tgaatactgc catttgtact
     3421 gctgtcttaa gatgttcagc ctgatctctt acctgtccta taattttctt taattcttta
     3481 ttcatagatt ctactactcc ttgactttgg ggattgtagg gaatttccag gtctgaagat
     3541 cctgctgctt gctgtgcttt tttcttactt ttgttttgct cttcctctat cttgtctaaa
     3601 gcttccttgg tgtcttttat ctctatcctt tgatgcacac aatagagggt tgctactgta
     3661 ttatataatg atctaagttc ttctgatcct gtctgaaggg atggttgtag ctgtcccagt
     3721 atttgtctac agccttctga tgtttctaac aggccagtat taactgcgaa tcgttctagc
     3781 tccctgcttg cccatactat atgttttaat ttatattttt tctttccccc tggccttaac
     3841 cgaatttttt cccatcgcga tctaattctc ccccgcttaa tactgacgct ctcgcaccca
     3901 tctctctcct tctagcctcc gctagtcaaa atttttggcg tactcaccag tcgccgcccc
     3961 tcgcctcttg ccgtgcgcgc ttcagcaagc cgagtcctgc gtcgagagag ctcctctggt
     4021 ttccctttcg ctttcaagtc cctgttcggg cgccactgct agagattttc cacactgact
     4081 aaaagggtct gagggatctc tagttaccag agtcacacaa cagacgggca cacactactt
     4141 gaagcactca aggcaagctt tattgaggct taagcagtgg gttccctagt tagccagaga
     4201 gctcccaggc tcagatctgg tctaaccaga gagacccagt acaggcaaaa agcagctgct
     4261 tatatgcagg atctgagggc tcgccactcc ccagtcccgc ccaggccacg cctcccatgg
     4321 taatagcgat gactaatacg tagatgtact gccaagtagg aaagtcccat aaggtcatgt
     4381 actgggcata atgccaggcg ggccatttac cgtcattgac gtcaataggg ggcgtacttg
     4441 gcatatgata cacttgatgt actgccaagt gggcagttta ccgtaaatac tccacccatt
     4501 gacgtcaatg gaaagtccct attggcgtta ctatgggaac atacgtcatt attgacgtca
     4561 atgggcgggg gtcgttgggc ggtcagccag gcgggccatt taccgtaagt tatgtaacgc
     4621 ggaactccat atatgggcta tgaactaatg accccgtaat tgattactat taataactag
     4681 tcaataatca atgtcgaccc aggtggcact tttcggggaa atgtgcgcgg aacccctatt
     4741 tgtttatttt tctaaataca ttcaaatatg tatccgctca tgagacaata accctgataa
     4801 atgcttcaat aatattgaaa aaggaagagt atgagtattc aacatttccg tgtcgccctt
     4861 attccctttt ttgcggcatt ttgccttcct gtttttgctc acccagaaac gctggtgaaa
     4921 gtaaaagatg ctgaagatca gttgggtgca cgagtgggtt acatcgaact ggatctcaac
     4981 agcggtaaga tccttgagag ttttcgcccc gaagaacgtt ttccaatgat gagcactttt
     5041 aaagttctgc tatgtggcgc ggtattatcc cgtattgacg ccgggcaaga gcaactcggt
     5101 cgccgcatac actattctca gaatgacttg gttgagtact caccagtcac agaaaagcat
     5161 cttacggatg gcatgacagt aagagaatta tgcagtgctg ccataaccat gagtgataac
     5221 actgcggcca acttacttct gacaacgatc ggaggaccga aggagctaac cgcttttttg
     5281 cacaacatgg gggatcatgt aactcgcctt gatcgttggg aaccggagct gaatgaagcc
     5341 ataccaaacg acgagcgtga caccacgatg cctgtagcaa tggcaacaac gttgcgcaaa
     5401 ctattaactg gcgaactact tactctagct tcccggcaac aattaataga ctggatggag
     5461 gcggataaag ttgcaggacc acttctgcgc tcggcccttc cggctggctg gtttattgct
     5521 gataaatctg gagccggtga gcgtgggtct cgcggtatca ttgcagcact ggggccagat
     5581 ggtaagccct cccgtatcgt agttatctac acgacgggga gtcaggcaac tatggatgaa
     5641 cgaaatagac agatcgctga gataggtgcc tcactgatta agcattggta actgtcagac
     5701 caagtttact catatatact ttagattgat ttaaaacttc atttttaatt taaaaggatc
     5761 taggtgaaga tcctttttga taatctcatg accaaaatcc cttaacgtga gttttcgttc
     5821 cactgagcgt cagaccccgt agaaaagatc aaaggatctt cttgagatcc tttttttctg
     5881 cgcgtaatct gctgcttgca aacaaaaaaa ccaccgctac cagcggtggt ttgtttgccg
     5941 gatcaagagc taccaactct ttttccgaag gtaactggct tcagcagagc gcagatacca
     6001 aatactgttc ttctagtgta gccgtagtta ggccaccact tcaagaactc tgtagcaccg
     6061 cctacatacc tcgctctgct aatcctgtta ccagtggctg ctgccagtgg cgataagtcg
     6121 tgtcttaccg ggttggactc aagacgatag ttaccggata aggcgcagcg gtcgggctga
     6181 acggggggtt cgtgcacaca gcccagcttg gagcgaacga cctacaccga actgagatac
     6241 ctacagcgtg agctatgaga aagcgccacg cttcccgaag ggagaaaggc ggacaggtat
     6301 ccggtaagcg gcagggtcgg aacaggagag cgcacgaggg agcttccagg gggaaacgcc
     6361 tggtatcttt atagtcctgt cgggtttcgc cacctctgac ttgagcgtcg atttttgtga
     6421 tgctcgtcag gggggcggag cctatggaaa aacgccagca acgcggcctt tttacggttc
     6481 ctggcctttt gctggccttt tgctcacatg ttctttcctg cgttatcccc tgcttctgtg
     6541 gataaccgta ttaccgcctt tgagtgagct gataccgctc gccgcagccg aacgaccgag
     6601 cgcagcgagt cagtgagcga ggaagcggaa gagcgcccaa tacgcaaacc gcctctcccc
     6661 gcgcgttggc cgattcatta atgcagcgga tccagacatg ataagataca ttgatgagtt
     6721 tggacaaacc acaactagaa tgcagtgaaa aaaatgcttt atttgtgaaa tttgtgatgc
     6781 tattgcttta tttgtaacca ttataagctg caataaacaa gttagctttt tgcaaaagcc
     6841 taggcctcca aaaaagcctc ctcactactt ctggaatagc tcagaggccg aggcggcctc
     6901 ggcctctgca taaataaaaa aaattagtca gccatggggc ggagaatggg cggaactggg
     6961 cggagttagg ggcgggatgg gcggagttag gggcgggact atggttgctg actaattgag
     7021 atgcggatcc gctggcacga caggtttccc gactggaaag cgggcagtga gcgcaacgca
     7081 attaatgtga gttagctcac tcattaggca ccccaggctt tacactttat gcttccggct
     7141 cgtatgttgt gtggaattgt gagcggataa caatttcaca caggaaacag ctatgaccat
     7201 gattacgcca agcttgggct gcaggtcgag ggatctccat aagagaagag ggacagctat
     7261 gactgggagt agtcaggaga ggaggaaaaa tctggctagt aaaacatgta aggaaaattt
     7321 tagggatgtt aaagaaaaaa ataacacaaa acaaaatat
//
