LOCUS       sequence-488185-        7278 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  Express mEGFP-tagged intrinsically disordered protein (IDR), 
            FOidr_165, derived from human fusion protein RCSD1_ABL2.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 7278)
  AUTHORS   Maiti S, Tripathi S, Baggett DW, Phillips AH, Park CG, Wang J, 
            Wahiduzzaman, Freyaldenhoven WT, Kinger S, Pioso BJ, Bollinger JC, 
            Somjee R, Lang B, Babu MM, Kriwacki RW
  TITLE     Proteome-wide computational analyses reveal links between protein 
            condensate formation and RNA biology.
  JOURNAL   Sci Adv. 2025 Dec 5;11(49):eady1420. doi: 10.1126/sciadv.ady1420. 
            Epub 2025 Dec 3.
  PUBMED    41337585
REFERENCE   2  (bases 1 to 7278)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; journalName: "Sci Adv."; 
            date: "2025-12-5"; volume: "11(49):eady1420. doi"; pages: " 
            10.1126/sciadv.ady1420. Epub 2025 Dec 3"
COMMENT     Sequence Label: CL20_mEGFP_FOidr_165
FEATURES             Location/Qualifiers
     source          1..7278
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     primer_bind     181..200
                     /label=rbglobpA-R
                     /note="Rabbit beta-globin polyA, reverse primer. Also 
                     called rb-glob-pA-term-R"
     polyA_signal    199..254
                     /label=beta-globin poly(A) signal
                     /note="rabbit beta-globin polyadenylation signal (Gil and 
                     Proudfoot, 1987)"
     primer_bind     300..319
                     /label=Bglob-pA-R
                     /note="Rabbit beta-globin polyA region, reverse primer"
     CDS             complement(join(811..1521,1522..1524,1525..1527))
                     /codon_start=1
                     /product="enhanced GFP with monomerizing A206K mutation 
                     (Zacharias et al., 2002)"
                     /label=mEGFP
                     /note="mammalian codon-optimized"
                     /translation="MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTL
                     KFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDD
                     GNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIK
                     VNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLL
                     EFVTAAGITLGMDELYK"
     primer_bind     complement(853..874)
                     /label=EGFP-C
                     /note="EGFP, forward primer"
     primer_bind     1202..1221
                     /label=EXFP-R
                     /note="For distinguishing EGFP variants, reverse primer"
     primer_bind     1461..1482
                     /label=EGFP-N
                     /note="EGFP, reverse primer"
     regulatory      1524..1533
                     /label=Kozak sequence
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
                     /regulatory_class="other"
     promoter        complement(1609..1812)
                     /label=CMV promoter
                     /note="human cytomegalovirus (CMV) immediate early 
                     promoter"
     primer_bind     complement(1638..1658)
                     /label=CMV-F
                     /note="Human CMV immediate early promoter, forward primer"
     enhancer        1813..2116
                     /label=CMV enhancer
                     /note="human cytomegalovirus immediate early enhancer"
     CDS             complement(2373..2417)
                     /codon_start=1
                     /product="antigenic peptide corresponding to amino acids 
                     655 to 669 of the HIV envelope protein gp41 (Lutje Hulsik 
                     et al., 2013)"
                     /label=gp41 peptide
                     /note="recognized by the 2H10 single-chain llama nanobody"
                     /translation="KNEQELLELDKWASL"
     misc_feature    2602..2835
                     /label=RRE
                     /note="The Rev response element (RRE) of HIV-1 allows for 
                     Rev-dependent mRNA export from the nucleus to the 
                     cytoplasm."
     misc_feature    3195..3312
                     /label=cPPT/CTS
                     /note="central polypurine tract and central termination 
                     sequence of HIV-1"
     misc_feature    3804..3929
                     /label=HIV-1 Psi
                     /note="packaging signal of human immunodeficiency virus 
                     type 1"
     LTR             3976..4233
                     /label=5' LTR (truncated)
                     /note="truncated 5' long terminal repeat (LTR) from HIV-1"
     enhancer        4235..4614
                     /label=CMV enhancer
                     /note="human cytomegalovirus immediate early enhancer"
     promoter        4645..4749
                     /gene="bla"
                     /label=AmpR promoter
     CDS             join(4750..4818,4819..5610)
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     complement(4968..4987)
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
     rep_origin      5781..6369
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     6270..6289
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     primer_bind     6523..6540
                     /label=L4440
                     /note="L4440 vector, forward primer"
     polyA_signal    6608..6742
                     /label=SV40 poly(A) signal
                     /note="SV40 polyadenylation signal"
     primer_bind     complement(6632..6651)
                     /label=EBV-rev
                     /note="SV40 polyA terminator, reverse primer"
     primer_bind     6686..6705
                     /label=SV40pA-R
                     /note="SV40 polyA, reverse primer"
     promoter        complement(6748..6943)
                     /label=SV40 promoter
                     /note="SV40 early promoter"
     rep_origin      6762..6897
                     /label=SV40 ori
                     /note="SV40 origin of replication"
     protein_bind    7002..7023
                     /label=CAP binding site
                     /bound_moiety="E. coli catabolite activator protein"
                     /note="CAP binding activates transcription in the presence 
                     of cAMP."
     promoter        join(7038..7043,7044..7061,7062..7068)
                     /label=lac promoter
                     /note="promoter for the E. coli lac operon"
     protein_bind    7076..7092
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     primer_bind     7081..7103
                     /label=M13/pUC Reverse
                     /note="In lacZ gene"
     primer_bind     7100..7116
                     /label=M13 rev
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     7100..7116
                     /label=M13 Reverse
                     /note="In lacZ gene. Also called M13-rev"
ORIGIN
        1 aaaaaaaatc taacctcaag tcaaggcttt tctatggaat aaggaatgga cagcaggggg
       61 ctgtttcata tactgatgac ctctttatag ccaacctttg ttcatggcag ccagcatatg
      121 ggcatatgtt gccaaactct aaaccaaata ctcattctga tgttttaaat gatttgccct
      181 cccatatgtc cttccgagtg agagacacaa aaaattccaa cacactattg caatgaaaat
      241 aaatttcctt tattagccag aagtcagatg ctcaaggggc ttcatgatgt ccccataatt
      301 tttggcagag ggaaaaagat ctgctagctc gagcagctga agctttattg aggcttaagc
      361 agtgggttcc ctagttagcc agagagctcc caggctcaga tctggtctaa ccagagagac
      421 ccagtacagg caaaaagcag atcttgtctt ctttgggagt gaattagccc ttccagtccc
      481 cccttttctt ttaaaaagtg gctaagatct acagctgcct tgtaagtcat tggtcttaaa
      541 ggtaccgtaa tcttatctag aaccggttca ctcctcacca ttctggccca ggtctacctt
      601 gggggggaac agggggaggg aacagggcgg tttccttcgg gttggtttac tggctggtgt
      661 ctccttggct gcagccgcct gctccctaaa ccgcccggcc agctgggcca ccgaggggga
      721 cgccgagttg tccacattgg cattggtctc tgccggtctt tcctccatcc gggaagcggc
      781 cgcacttccc ccggagcctc cgcttccgcc cttgtacagc tcgtccatgc cgagagtgat
      841 cccggcggcg gtcacgaact ccagcaggac catgtgatcg cgcttctcgt tggggtcttt
      901 gctcagcttg gactgggtgc tcaggtagtg gttgtcgggc agcagcacgg ggccgtcgcc
      961 gatgggggtg ttctgctggt agtggtcggc gagctgcacg ctgccgtcct cgatgttgtg
     1021 gcggatcttg aagttcacct tgatgccgtt cttctgcttg tcggccatga tatagacgtt
     1081 gtggctgttg tagttgtact ccagcttgtg ccccaggatg ttgccgtcct ccttgaagtc
     1141 gatgcccttc agctcgatgc ggttcaccag ggtgtcgccc tcgaacttca cctcggcgcg
     1201 ggtcttgtag ttgccgtcgt ccttgaagaa gatggtgcgc tcctggacgt agccttcggg
     1261 catggcggac ttgaagaagt cgtgctgctt catgtggtcg gggtagcggc tgaagcactg
     1321 cacgccgtag gtcagggtgg tcacgagggt gggccagggc acgggcagct tgccggtggt
     1381 gcagatgaac ttcagggtca gcttgccgta ggtggcatcg ccctcgccct cgccggacac
     1441 gctgaacttg tggccgttta cgtcgccgtc cagctcgacc aggatgggca ccaccccggt
     1501 gaacagctcc tcgcccttgc tcaccatggt ggcgaccggt ggatcccggg cccgcggtac
     1561 cgtcgactgc agaattcggt tcactaaacg agcccggttc actaaacgag ctctgcttat
     1621 atagacctcc caccgtacac gcctaccgcc catttgcgtc aatggggcgg agttgttacg
     1681 acattttgga aagtcccgtt gattttggtg ccaaaacaaa ctcccattga cgtcaatggg
     1741 gtggagactt ggaaatcccc gtgagtcaaa ccgctatcca cgcccattga tgtactgcca
     1801 aaaccgcatc accatggtaa tagcgatgac taatacgtag atgtactgcc aagtaggaaa
     1861 gtcccataag gtcatgtact gggcataatg ccaggcgggc catttaccgt cattgacgtc
     1921 aatagggggc gtacttggca tatgatacac ttgatgtact gccaagtggg cagtttaccg
     1981 taaatactcc acccattgac gtcaatggaa agtccctatt ggcgttacta tgggaacata
     2041 cgtcattatt gacgtcaatg ggcgggggtc gttgggcggt cagccaggcg ggccatttac
     2101 cgtaagttat gtaacgcgga actccatata tgggctatga actaatgacc ccgtaattga
     2161 ttactattaa taactagcac gcgttcgaag cttgagctcg gtcccctcgg ggttgggagg
     2221 tgggtctgaa acgataatgg tgaatatccc tgcctaactc tattcactat agaaagtaca
     2281 gcaaaaacta ttcttaaacc taccaagcct cctactatca ttatgaataa ttttatatac
     2341 cacagccaat ttgttatgtt aaaccaattc cacaaacttg cccatttatc taattccaat
     2401 aattcttgtt cattcttttc ttgctggttt tgcgattctt caattaagga gtgtattaag
     2461 cttgtgtaat tgttaatttc tctgtcccac tccatccagg tcgtgtgatt ccaaatctgt
     2521 tccagagatt tattactcca actagcattc caaggcacag cagtggtgca aatgagtttt
     2581 ccagagcaac cccaaatccc caggagctgt tgatccttta ggtatctttc cacagccagg
     2641 attcttgcct ggagctgctt gatgccccag actgtgagtt gcaacagatg ctgttgcgcc
     2701 tcaatagccc tcagcaaatt gttctgctgc tgcactatac cagacaataa ttgtctggcc
     2761 tgtaccgtca gcgtcattga cgctgcgccc atagtgcttc ctgctgctcc caagaaccca
     2821 aggaacaaag ctcctattcc cactgctctt ttttctctct gcaccactct tctctttgcc
     2881 ttggtgggtg ctactcctaa tggttcaatt tttactactt tatatttata taattcactt
     2941 ctccaattgt ccctcatatc tcctccttat ggtgttttac taaacttttc catgttctaa
     3001 tcctcatcct gtctacttgc cacacaatca tcacctgcca tctgttttcc ataatcccta
     3061 atgatctttg cttttcttct tggcactact tttatgtcac tattatcttg tattactact
     3121 gccccttcac ctttccagag gagctttgct ggtcctttcc aaagtggatt tctgctgtcc
     3181 ctgtaataaa cccgaaaatt ttgaattttt gtaatttgtt tttgtaattc tttagtttgt
     3241 atgtctgttg ctattatgtc tactattctt tcccctgcac tgtacccccc aatcccccct
     3301 tttcttttaa aattgtggat gaatactgcc atttgtactg ctgtcttaag atgttcagcc
     3361 tgatctctta cctgtcctat aattttcttt aattctttat tcatagattc tactactcct
     3421 tgactttggg gattgtaggg aatttccagg tctgaagatc ctgctgcttg ctgtgctttt
     3481 ttcttacttt tgttttgctc ttcctctatc ttgtctaaag cttccttggt gtcttttatc
     3541 tctatccttt gatgcacaca atagagggtt gctactgtat tatataatga tctaagttct
     3601 tctgatcctg tctgaaggga tggttgtagc tgtcccagta tttgtctaca gccttctgat
     3661 gtttctaaca ggccagtatt aactgcgaat cgttctagct ccctgcttgc ccatactata
     3721 tgttttaatt tatatttttt ctttccccct ggccttaacc gaattttttc ccatcgcgat
     3781 ctaattctcc cccgcttaat actgacgctc tcgcacccat ctctctcctt ctagcctccg
     3841 ctagtcaaaa tttttggcgt actcaccagt cgccgcccct cgcctcttgc cgtgcgcgct
     3901 tcagcaagcc gagtcctgcg tcgagagagc tcctctggtt tccctttcgc tttcaagtcc
     3961 ctgttcgggc gccactgcta gagattttcc acactgacta aaagggtctg agggatctct
     4021 agttaccaga gtcacacaac agacgggcac acactacttg aagcactcaa ggcaagcttt
     4081 attgaggctt aagcagtggg ttccctagtt agccagagag ctcccaggct cagatctggt
     4141 ctaaccagag agacccagta caggcaaaaa gcagctgctt atatgcagga tctgagggct
     4201 cgccactccc cagtcccgcc caggccacgc ctcccatggt aatagcgatg actaatacgt
     4261 agatgtactg ccaagtagga aagtcccata aggtcatgta ctgggcataa tgccaggcgg
     4321 gccatttacc gtcattgacg tcaatagggg gcgtacttgg catatgatac acttgatgta
     4381 ctgccaagtg ggcagtttac cgtaaatact ccacccattg acgtcaatgg aaagtcccta
     4441 ttggcgttac tatgggaaca tacgtcatta ttgacgtcaa tgggcggggg tcgttgggcg
     4501 gtcagccagg cgggccattt accgtaagtt atgtaacgcg gaactccata tatgggctat
     4561 gaactaatga ccccgtaatt gattactatt aataactagt caataatcaa tgtcgaccca
     4621 ggtggcactt ttcggggaaa tgtgcgcgga acccctattt gtttattttt ctaaatacat
     4681 tcaaatatgt atccgctcat gagacaataa ccctgataaa tgcttcaata atattgaaaa
     4741 aggaagagta tgagtattca acatttccgt gtcgccctta ttcccttttt tgcggcattt
     4801 tgccttcctg tttttgctca cccagaaacg ctggtgaaag taaaagatgc tgaagatcag
     4861 ttgggtgcac gagtgggtta catcgaactg gatctcaaca gcggtaagat ccttgagagt
     4921 tttcgccccg aagaacgttt tccaatgatg agcactttta aagttctgct atgtggcgcg
     4981 gtattatccc gtattgacgc cgggcaagag caactcggtc gccgcataca ctattctcag
     5041 aatgacttgg ttgagtactc accagtcaca gaaaagcatc ttacggatgg catgacagta
     5101 agagaattat gcagtgctgc cataaccatg agtgataaca ctgcggccaa cttacttctg
     5161 acaacgatcg gaggaccgaa ggagctaacc gcttttttgc acaacatggg ggatcatgta
     5221 actcgccttg atcgttggga accggagctg aatgaagcca taccaaacga cgagcgtgac
     5281 accacgatgc ctgtagcaat ggcaacaacg ttgcgcaaac tattaactgg cgaactactt
     5341 actctagctt cccggcaaca attaatagac tggatggagg cggataaagt tgcaggacca
     5401 cttctgcgct cggcccttcc ggctggctgg tttattgctg ataaatctgg agccggtgag
     5461 cgtgggtctc gcggtatcat tgcagcactg gggccagatg gtaagccctc ccgtatcgta
     5521 gttatctaca cgacggggag tcaggcaact atggatgaac gaaatagaca gatcgctgag
     5581 ataggtgcct cactgattaa gcattggtaa ctgtcagacc aagtttactc atatatactt
     5641 tagattgatt taaaacttca tttttaattt aaaaggatct aggtgaagat cctttttgat
     5701 aatctcatga ccaaaatccc ttaacgtgag ttttcgttcc actgagcgtc agaccccgta
     5761 gaaaagatca aaggatcttc ttgagatcct ttttttctgc gcgtaatctg ctgcttgcaa
     5821 acaaaaaaac caccgctacc agcggtggtt tgtttgccgg atcaagagct accaactctt
     5881 tttccgaagg taactggctt cagcagagcg cagataccaa atactgttct tctagtgtag
     5941 ccgtagttag gccaccactt caagaactct gtagcaccgc ctacatacct cgctctgcta
     6001 atcctgttac cagtggctgc tgccagtggc gataagtcgt gtcttaccgg gttggactca
     6061 agacgatagt taccggataa ggcgcagcgg tcgggctgaa cggggggttc gtgcacacag
     6121 cccagcttgg agcgaacgac ctacaccgaa ctgagatacc tacagcgtga gctatgagaa
     6181 agcgccacgc ttcccgaagg gagaaaggcg gacaggtatc cggtaagcgg cagggtcgga
     6241 acaggagagc gcacgaggga gcttccaggg ggaaacgcct ggtatcttta tagtcctgtc
     6301 gggtttcgcc acctctgact tgagcgtcga tttttgtgat gctcgtcagg ggggcggagc
     6361 ctatggaaaa acgccagcaa cgcggccttt ttacggttcc tggccttttg ctggcctttt
     6421 gctcacatgt tctttcctgc gttatcccct gcttctgtgg ataaccgtat taccgccttt
     6481 gagtgagctg ataccgctcg ccgcagccga acgaccgagc gcagcgagtc agtgagcgag
     6541 gaagcggaag agcgcccaat acgcaaaccg cctctccccg cgcgttggcc gattcattaa
     6601 tgcagcggat ccagacatga taagatacat tgatgagttt ggacaaacca caactagaat
     6661 gcagtgaaaa aaatgcttta tttgtgaaat ttgtgatgct attgctttat ttgtaaccat
     6721 tataagctgc aataaacaag ttagcttttt gcaaaagcct aggcctccaa aaaagcctcc
     6781 tcactacttc tggaatagct cagaggccga ggcggcctcg gcctctgcat aaataaaaaa
     6841 aattagtcag ccatggggcg gagaatgggc ggaactgggc ggagttaggg gcgggatggg
     6901 cggagttagg ggcgggacta tggttgctga ctaattgaga tgcggatccg ctggcacgac
     6961 aggtttcccg actggaaagc gggcagtgag cgcaacgcaa ttaatgtgag ttagctcact
     7021 cattaggcac cccaggcttt acactttatg cttccggctc gtatgttgtg tggaattgtg
     7081 agcggataac aatttcacac aggaaacagc tatgaccatg attacgccaa gcttgggctg
     7141 caggtcgagg gatctccata agagaagagg gacagctatg actgggagta gtcaggagag
     7201 gaggaaaaat ctggctagta aaacatgtaa ggaaaatttt agggatgtta aagaaaaaaa
     7261 taacacaaaa caaaatat
//
