LOCUS       sequence-488239-        7356 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  Express mEGFP-tagged intrinsically disordered protein (IDR), 
            Vidr_009, derived from human protein SETD5.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 7356)
  AUTHORS   Maiti S, Tripathi S, Baggett DW, Phillips AH, Park CG, Wang J, 
            Wahiduzzaman, Freyaldenhoven WT, Kinger S, Pioso BJ, Bollinger JC, 
            Somjee R, Lang B, Babu MM, Kriwacki RW
  TITLE     Proteome-wide computational analyses reveal links between protein 
            condensate formation and RNA biology.
  JOURNAL   Sci Adv. 2025 Dec 5;11(49):eady1420. doi: 10.1126/sciadv.ady1420. 
            Epub 2025 Dec 3.
  PUBMED    41337585
REFERENCE   2  (bases 1 to 7356)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; journalName: "Sci Adv."; 
            date: "2025-12-5"; volume: "11(49):eady1420. doi"; pages: " 
            10.1126/sciadv.ady1420. Epub 2025 Dec 3"
COMMENT     Sequence Label: CL20_mEGFP_Vidr_009
FEATURES             Location/Qualifiers
     source          1..7356
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     rep_origin      1..589
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     490..509
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     primer_bind     743..760
                     /label=L4440
                     /note="L4440 vector, forward primer"
     polyA_signal    828..962
                     /label=SV40 poly(A) signal
                     /note="SV40 polyadenylation signal"
     primer_bind     complement(852..871)
                     /label=EBV-rev
                     /note="SV40 polyA terminator, reverse primer"
     primer_bind     906..925
                     /label=SV40pA-R
                     /note="SV40 polyA, reverse primer"
     promoter        complement(968..1163)
                     /label=SV40 promoter
                     /note="SV40 early promoter"
     rep_origin      982..1117
                     /label=SV40 ori
                     /note="SV40 origin of replication"
     protein_bind    1222..1243
                     /label=CAP binding site
                     /bound_moiety="E. coli catabolite activator protein"
                     /note="CAP binding activates transcription in the presence 
                     of cAMP."
     promoter        join(1258..1263,1264..1281,1282..1288)
                     /label=lac promoter
                     /note="promoter for the E. coli lac operon"
     protein_bind    1296..1312
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     primer_bind     1301..1323
                     /label=M13/pUC Reverse
                     /note="In lacZ gene"
     primer_bind     1320..1336
                     /label=M13 rev
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     1320..1336
                     /label=M13 Reverse
                     /note="In lacZ gene. Also called M13-rev"
     primer_bind     1679..1698
                     /label=rbglobpA-R
                     /note="Rabbit beta-globin polyA, reverse primer. Also 
                     called rb-glob-pA-term-R"
     polyA_signal    1697..1752
                     /label=beta-globin poly(A) signal
                     /note="rabbit beta-globin polyadenylation signal (Gil and 
                     Proudfoot, 1987)"
     primer_bind     1798..1817
                     /label=Bglob-pA-R
                     /note="Rabbit beta-globin polyA region, reverse primer"
     CDS             complement(join(2387..3097,3098..3100,3101..3103))
                     /codon_start=1
                     /product="enhanced GFP with monomerizing A206K mutation 
                     (Zacharias et al., 2002)"
                     /label=mEGFP
                     /note="mammalian codon-optimized"
                     /translation="MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTL
                     KFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDD
                     GNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIK
                     VNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLL
                     EFVTAAGITLGMDELYK"
     primer_bind     complement(2429..2450)
                     /label=EGFP-C
                     /note="EGFP, forward primer"
     primer_bind     2778..2797
                     /label=EXFP-R
                     /note="For distinguishing EGFP variants, reverse primer"
     primer_bind     3037..3058
                     /label=EGFP-N
                     /note="EGFP, reverse primer"
     regulatory      3100..3109
                     /label=Kozak sequence
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
                     /regulatory_class="other"
     promoter        complement(3185..3388)
                     /label=CMV promoter
                     /note="human cytomegalovirus (CMV) immediate early 
                     promoter"
     primer_bind     complement(3214..3234)
                     /label=CMV-F
                     /note="Human CMV immediate early promoter, forward primer"
     enhancer        3389..3692
                     /label=CMV enhancer
                     /note="human cytomegalovirus immediate early enhancer"
     CDS             complement(3949..3993)
                     /codon_start=1
                     /product="antigenic peptide corresponding to amino acids 
                     655 to 669 of the HIV envelope protein gp41 (Lutje Hulsik 
                     et al., 2013)"
                     /label=gp41 peptide
                     /note="recognized by the 2H10 single-chain llama nanobody"
                     /translation="KNEQELLELDKWASL"
     misc_feature    4178..4411
                     /label=RRE
                     /note="The Rev response element (RRE) of HIV-1 allows for 
                     Rev-dependent mRNA export from the nucleus to the 
                     cytoplasm."
     misc_feature    4771..4888
                     /label=cPPT/CTS
                     /note="central polypurine tract and central termination 
                     sequence of HIV-1"
     misc_feature    5380..5505
                     /label=HIV-1 Psi
                     /note="packaging signal of human immunodeficiency virus 
                     type 1"
     LTR             5552..5809
                     /label=5' LTR (truncated)
                     /note="truncated 5' long terminal repeat (LTR) from HIV-1"
     enhancer        5811..6190
                     /label=CMV enhancer
                     /note="human cytomegalovirus immediate early enhancer"
     promoter        6221..6325
                     /gene="bla"
                     /label=AmpR promoter
     CDS             join(6326..6394,6395..7186)
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     complement(6544..6563)
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
ORIGIN
        1 ttgagatcct ttttttctgc gcgtaatctg ctgcttgcaa acaaaaaaac caccgctacc
       61 agcggtggtt tgtttgccgg atcaagagct accaactctt tttccgaagg taactggctt
      121 cagcagagcg cagataccaa atactgttct tctagtgtag ccgtagttag gccaccactt
      181 caagaactct gtagcaccgc ctacatacct cgctctgcta atcctgttac cagtggctgc
      241 tgccagtggc gataagtcgt gtcttaccgg gttggactca agacgatagt taccggataa
      301 ggcgcagcgg tcgggctgaa cggggggttc gtgcacacag cccagcttgg agcgaacgac
      361 ctacaccgaa ctgagatacc tacagcgtga gctatgagaa agcgccacgc ttcccgaagg
      421 gagaaaggcg gacaggtatc cggtaagcgg cagggtcgga acaggagagc gcacgaggga
      481 gcttccaggg ggaaacgcct ggtatcttta tagtcctgtc gggtttcgcc acctctgact
      541 tgagcgtcga tttttgtgat gctcgtcagg ggggcggagc ctatggaaaa acgccagcaa
      601 cgcggccttt ttacggttcc tggccttttg ctggcctttt gctcacatgt tctttcctgc
      661 gttatcccct gattctgtgg ataaccgtat taccgccttt gagtgagctg ataccgctcg
      721 ccgcagccga acgaccgagc gcagcgagtc agtgagcgag gaagcggaag agcgcccaat
      781 acgcaaaccg cctctccccg cgcgttggcc gattcattaa tgcagcggat ccagacatga
      841 taagatacat tgatgagttt ggacaaacca caactagaat gcagtgaaaa aaatgcttta
      901 tttgtgaaat ttgtgatgct attgctttat ttgtaaccat tataagctgc aataaacaag
      961 ttagcttttt gcaaaagcct aggcctccaa aaaagcctcc tcactacttc tggaatagct
     1021 cagaggccga ggcggcctcg gcctctgcat aaataaaaaa aattagtcag ccatggggcg
     1081 gagaatgggc ggaactgggc ggagttaggg gcgggatggg cggagttagg ggcgggacta
     1141 tggttgctga ctaattgaga tgcggatccg ctggcacgac aggtttcccg actggaaagc
     1201 gggcagtgag cgcaacgcaa ttaatgtgag ttagctcact cattaggcac cccaggcttt
     1261 acactttatg cttccggctc gtatgttgtg tggaattgtg agcggataac aatttcacac
     1321 aggaaacagc tatgaccatg attacgccaa gcttgggctg caggtcgagg gatctccata
     1381 agagaagagg gacagctatg actgggagta gtcaggagag gaggaaaaat ctggctagta
     1441 aaacatgtaa ggaaaatttt agggatgtta aagaaaaaaa taacacaaaa caaaatataa
     1501 aaaaaatcta acctcaagtc aaggcttttc tatggaataa ggaatggaca gcagggggct
     1561 gtttcatata ctgatgacct ctttatagcc aacctttgtt catggcagcc agcatatggg
     1621 catatgttgc caaactctaa accaaatact cattctgatg ttttaaatga tttgccctcc
     1681 catatgtcct tccgagtgag agacacaaaa aattccaaca cactattgca atgaaaataa
     1741 atttccttta ttagccagaa gtcagatgct caaggggctt catgatgtcc ccataatttt
     1801 tggcagaggg aaaaagatct gctagctcga gcagctgaag ctttattgag gcttaagcag
     1861 tgggttccct agttagccag agagctccca ggctcagatc tggtctaacc agagagaccc
     1921 agtacaggca aaaagcagat cttgtcttct ttgggagtga attagccctt ccagtccccc
     1981 cttttctttt aaaaagtggc taagatctac agctgccttg taagtcattg gtcttaaagg
     2041 taccgtaatc ttatctagaa ccggttcatt cccacccttc ggtcgtattt tcgtctaaat
     2101 tttgtgcttc agacggacta ttcttgattt tcttcgtttt cggcgctgca cggcccttct
     2161 caggtgactt cttacgtttt ttgggtttag tacgacgtac agttaacgtg atcgaggtag
     2221 gggtgtgttg tgtagcggta tataacacag tagagggaga taattcctca tcccagcttt
     2281 cggttgcact cgaatctcct ccagagatgt tatcctgttt acggcggtgt aaacggatga
     2341 ccttccggga agcggccgca cttcccccgg agcctccgct tccgcccttg tacagctcgt
     2401 ccatgccgag agtgatcccg gcggcggtca cgaactccag caggaccatg tgatcgcgct
     2461 tctcgttggg gtctttgctc agcttggact gggtgctcag gtagtggttg tcgggcagca
     2521 gcacggggcc gtcgccgatg ggggtgttct gctggtagtg gtcggcgagc tgcacgctgc
     2581 cgtcctcgat gttgtggcgg atcttgaagt tcaccttgat gccgttcttc tgcttgtcgg
     2641 ccatgatata gacgttgtgg ctgttgtagt tgtactccag cttgtgcccc aggatgttgc
     2701 cgtcctcctt gaagtcgatg cccttcagct cgatgcggtt caccagggtg tcgccctcga
     2761 acttcacctc ggcgcgggtc ttgtagttgc cgtcgtcctt gaagaagatg gtgcgctcct
     2821 ggacgtagcc ttcgggcatg gcggacttga agaagtcgtg ctgcttcatg tggtcggggt
     2881 agcggctgaa gcactgcacg ccgtaggtca gggtggtcac gagggtgggc cagggcacgg
     2941 gcagcttgcc ggtggtgcag atgaacttca gggtcagctt gccgtaggtg gcatcgccct
     3001 cgccctcgcc ggacacgctg aacttgtggc cgtttacgtc gccgtccagc tcgaccagga
     3061 tgggcaccac cccggtgaac agctcctcgc ccttgctcac catggtggcg accggtggat
     3121 cccgggcccg cggtaccgtc gactgcagaa ttcggttcac taaacgagcc cggttcacta
     3181 aacgagctct gcttatatag acctcccacc gtacacgcct accgcccatt tgcgtcaatg
     3241 gggcggagtt gttacgacat tttggaaagt cccgttgatt ttggtgccaa aacaaactcc
     3301 cattgacgtc aatggggtgg agacttggaa atccccgtga gtcaaaccgc tatccacgcc
     3361 cattgatgta ctgccaaaac cgcatcacca tggtaatagc gatgactaat acgtagatgt
     3421 actgccaagt aggaaagtcc cataaggtca tgtactgggc ataatgccag gcgggccatt
     3481 taccgtcatt gacgtcaata gggggcgtac ttggcatatg atacacttga tgtactgcca
     3541 agtgggcagt ttaccgtaaa tactccaccc attgacgtca atggaaagtc cctattggcg
     3601 ttactatggg aacatacgtc attattgacg tcaatgggcg ggggtcgttg ggcggtcagc
     3661 caggcgggcc atttaccgta agttatgtaa cgcggaactc catatatggg ctatgaacta
     3721 atgaccccgt aattgattac tattaataac tagcacgcgt tcgaagcttg agctcggtcc
     3781 cctcggggtt gggaggtggg tctgaaacga taatggtgaa tatccctgcc taactctatt
     3841 cactatagaa agtacagcaa aaactattct taaacctacc aagcctccta ctatcattat
     3901 gaataatttt atataccaca gccaatttgt tatgttaaac caattccaca aacttgccca
     3961 tttatctaat tccaataatt cttgttcatt cttttcttgc tggttttgcg attcttcaat
     4021 taaggagtgt attaagcttg tgtaattgtt aatttctctg tcccactcca tccaggtcgt
     4081 gtgattccaa atctgttcca gagatttatt actccaacta gcattccaag gcacagcagt
     4141 ggtgcaaatg agttttccag agcaacccca aatccccagg agctgttgat cctttaggta
     4201 tctttccaca gccaggattc ttgcctggag ctgcttgatg ccccagactg tgagttgcaa
     4261 cagatgctgt tgcgcctcaa tagccctcag caaattgttc tgctgctgca ctataccaga
     4321 caataattgt ctggcctgta ccgtcagcgt cattgacgct gcgcccatag tgcttcctgc
     4381 tgctcccaag aacccaagga acaaagctcc tattcccact gctctttttt ctctctgcac
     4441 cactcttctc tttgccttgg tgggtgctac tcctaatggt tcaattttta ctactttata
     4501 tttatataat tcacttctcc aattgtccct catatctcct ccttatggtg ttttactaaa
     4561 cttttccatg ttctaatcct catcctgtct acttgccaca caatcatcac ctgccatctg
     4621 ttttccataa tccctaatga tctttgcttt tcttcttggc actactttta tgtcactatt
     4681 atcttgtatt actactgccc cttcaccttt ccagaggagc tttgctggtc ctttccaaag
     4741 tggatttctg ctgtccctgt aataaacccg aaaattttga atttttgtaa tttgtttttg
     4801 taattcttta gtttgtatgt ctgttgctat tatgtctact attctttccc ctgcactgta
     4861 ccccccaatc cccccttttc ttttaaaatt gtggatgaat actgccattt gtactgctgt
     4921 cttaagatgt tcagcctgat ctcttacctg tcctataatt ttctttaatt ctttattcat
     4981 agattctact actccttgac tttggggatt gtagggaatt tccaggtctg aagatcctgc
     5041 tgcttgctgt gcttttttct tacttttgtt ttgctcttcc tctatcttgt ctaaagcttc
     5101 cttggtgtct tttatctcta tcctttgatg cacacaatag agggttgcta ctgtattata
     5161 taatgatcta agttcttctg atcctgtctg aagggatggt tgtagctgtc ccagtatttg
     5221 tctacagcct tctgatgttt ctaacaggcc agtattaact gcgaatcgtt ctagctccct
     5281 gcttgcccat actatatgtt ttaatttata ttttttcttt ccccctggcc ttaaccgaat
     5341 tttttcccat cgcgatctaa ttctcccccg cttaatactg acgctctcgc acccatctct
     5401 ctccttctag cctccgctag tcaaaatttt tggcgtactc accagtcgcc gcccctcgcc
     5461 tcttgccgtg cgcgcttcag caagccgagt cctgcgtcga gagagctcct ctggtttccc
     5521 tttcgctttc aagtccctgt tcgggcgcca ctgctagaga ttttccacac tgactaaaag
     5581 ggtctgaggg atctctagtt accagagtca cacaacagac gggcacacac tacttgaagc
     5641 actcaaggca agctttattg aggcttaagc agtgggttcc ctagttagcc agagagctcc
     5701 caggctcaga tctggtctaa ccagagagac ccagtacagg caaaaagcag ctgcttatat
     5761 gcaggatctg agggctcgcc actccccagt cccgcccagg ccacgcctcc catggtaata
     5821 gcgatgacta atacgtagat gtactgccaa gtaggaaagt cccataaggt catgtactgg
     5881 gcataatgcc aggcgggcca tttaccgtca ttgacgtcaa tagggggcgt acttggcata
     5941 tgatacactt gatgtactgc caagtgggca gtttaccgta aatactccac ccattgacgt
     6001 caatggaaag tccctattgg cgttactatg ggaacatacg tcattattga cgtcaatggg
     6061 cgggggtcgt tgggcggtca gccaggcggg ccatttaccg taagttatgt aacgcggaac
     6121 tccatatatg ggctatgaac taatgacccc gtaattgatt actattaata actagtcaat
     6181 aatcaatgtc gacccaggtg gcacttttcg gggaaatgtg cgcggaaccc ctatttgttt
     6241 atttttctaa atacattcaa atatgtatcc gctcatgaga caataaccct gataaatgct
     6301 tcaataatat tgaaaaagga agagtatgag tattcaacat ttccgtgtcg cccttattcc
     6361 cttttttgcg gcattttgcc ttcctgtttt tgctcaccca gaaacgctgg tgaaagtaaa
     6421 agatgctgaa gatcagttgg gtgcacgagt gggttacatc gaactggatc tcaacagcgg
     6481 taagatcctt gagagttttc gccccgaaga acgttttcca atgatgagca cttttaaagt
     6541 tctgctatgt ggcgcggtat tatcccgtat tgacgccggg caagagcaac tcggtcgccg
     6601 catacactat tctcagaatg acttggttga gtactcacca gtcacagaaa agcatcttac
     6661 ggatggcatg acagtaagag aattatgcag tgctgccata accatgagtg ataacactgc
     6721 ggccaactta cttctgacaa cgatcggagg accgaaggag ctaaccgctt ttttgcacaa
     6781 catgggggat catgtaactc gccttgatcg ttgggaaccg gagctgaatg aagccatacc
     6841 aaacgacgag cgtgacacca cgatgcctgt agcaatggca acaacgttgc gcaaactatt
     6901 aactggcgaa ctacttactc tagcttcccg gcaacaatta atagactgga tggaggcgga
     6961 taaagttgca ggaccacttc tgcgctcggc ccttccggct ggctggttta ttgctgataa
     7021 atctggagcc ggtgagcgtg ggtctcgcgg tatcattgca gcactggggc cagatggtaa
     7081 gccctcccgt atcgtagtta tctacacgac ggggagtcag gcaactatgg atgaacgaaa
     7141 tagacagatc gctgagatag gtgcctcact gattaagcat tggtaactgt cagaccaagt
     7201 ttactcatat atactttaga ttgatttaaa acttcatttt taatttaaaa ggatctaggt
     7261 gaagatcctt tttgataatc tcatgaccaa aatcccttaa cgtgagtttt cgttccactg
     7321 agcgtcagac cccgtagaaa agatcaaagg atcttc
//
