LOCUS       sequence-488243-        7341 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  Express mEGFP-tagged intrinsically disordered protein (IDR), 
            Vidr_013, derived from human protein ZEP2.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 7341)
  AUTHORS   Maiti S, Tripathi S, Baggett DW, Phillips AH, Park CG, Wang J, 
            Wahiduzzaman, Freyaldenhoven WT, Kinger S, Pioso BJ, Bollinger JC, 
            Somjee R, Lang B, Babu MM, Kriwacki RW
  TITLE     Proteome-wide computational analyses reveal links between protein 
            condensate formation and RNA biology.
  JOURNAL   Sci Adv. 2025 Dec 5;11(49):eady1420. doi: 10.1126/sciadv.ady1420. 
            Epub 2025 Dec 3.
  PUBMED    41337585
REFERENCE   2  (bases 1 to 7341)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; journalName: "Sci Adv."; 
            date: "2025-12-5"; volume: "11(49):eady1420. doi"; pages: " 
            10.1126/sciadv.ady1420. Epub 2025 Dec 3"
COMMENT     Sequence Label: CL20_mEGFP_Vidr_013
FEATURES             Location/Qualifiers
     source          1..7341
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     rep_origin      1..589
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     490..509
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     primer_bind     743..760
                     /label=L4440
                     /note="L4440 vector, forward primer"
     polyA_signal    828..962
                     /label=SV40 poly(A) signal
                     /note="SV40 polyadenylation signal"
     primer_bind     complement(852..871)
                     /label=EBV-rev
                     /note="SV40 polyA terminator, reverse primer"
     primer_bind     906..925
                     /label=SV40pA-R
                     /note="SV40 polyA, reverse primer"
     promoter        complement(968..1163)
                     /label=SV40 promoter
                     /note="SV40 early promoter"
     rep_origin      982..1117
                     /label=SV40 ori
                     /note="SV40 origin of replication"
     protein_bind    1222..1243
                     /label=CAP binding site
                     /bound_moiety="E. coli catabolite activator protein"
                     /note="CAP binding activates transcription in the presence 
                     of cAMP."
     promoter        join(1258..1263,1264..1281,1282..1288)
                     /label=lac promoter
                     /note="promoter for the E. coli lac operon"
     protein_bind    1296..1312
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     primer_bind     1301..1323
                     /label=M13/pUC Reverse
                     /note="In lacZ gene"
     primer_bind     1320..1336
                     /label=M13 rev
                     /note="common sequencing primer, one of multiple similar 
                     variants"
     primer_bind     1320..1336
                     /label=M13 Reverse
                     /note="In lacZ gene. Also called M13-rev"
     primer_bind     1679..1698
                     /label=rbglobpA-R
                     /note="Rabbit beta-globin polyA, reverse primer. Also 
                     called rb-glob-pA-term-R"
     polyA_signal    1697..1752
                     /label=beta-globin poly(A) signal
                     /note="rabbit beta-globin polyadenylation signal (Gil and 
                     Proudfoot, 1987)"
     primer_bind     1798..1817
                     /label=Bglob-pA-R
                     /note="Rabbit beta-globin polyA region, reverse primer"
     CDS             complement(join(2372..3082,3083..3085,3086..3088))
                     /codon_start=1
                     /product="enhanced GFP with monomerizing A206K mutation 
                     (Zacharias et al., 2002)"
                     /label=mEGFP
                     /note="mammalian codon-optimized"
                     /translation="MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTL
                     KFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDD
                     GNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIK
                     VNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLL
                     EFVTAAGITLGMDELYK"
     primer_bind     complement(2414..2435)
                     /label=EGFP-C
                     /note="EGFP, forward primer"
     primer_bind     2763..2782
                     /label=EXFP-R
                     /note="For distinguishing EGFP variants, reverse primer"
     primer_bind     3022..3043
                     /label=EGFP-N
                     /note="EGFP, reverse primer"
     regulatory      3085..3094
                     /label=Kozak sequence
                     /note="vertebrate consensus sequence for strong initiation 
                     of translation (Kozak, 1987)"
                     /regulatory_class="other"
     promoter        complement(3170..3373)
                     /label=CMV promoter
                     /note="human cytomegalovirus (CMV) immediate early 
                     promoter"
     primer_bind     complement(3199..3219)
                     /label=CMV-F
                     /note="Human CMV immediate early promoter, forward primer"
     enhancer        3374..3677
                     /label=CMV enhancer
                     /note="human cytomegalovirus immediate early enhancer"
     CDS             complement(3934..3978)
                     /codon_start=1
                     /product="antigenic peptide corresponding to amino acids 
                     655 to 669 of the HIV envelope protein gp41 (Lutje Hulsik 
                     et al., 2013)"
                     /label=gp41 peptide
                     /note="recognized by the 2H10 single-chain llama nanobody"
                     /translation="KNEQELLELDKWASL"
     misc_feature    4163..4396
                     /label=RRE
                     /note="The Rev response element (RRE) of HIV-1 allows for 
                     Rev-dependent mRNA export from the nucleus to the 
                     cytoplasm."
     misc_feature    4756..4873
                     /label=cPPT/CTS
                     /note="central polypurine tract and central termination 
                     sequence of HIV-1"
     misc_feature    5365..5490
                     /label=HIV-1 Psi
                     /note="packaging signal of human immunodeficiency virus 
                     type 1"
     LTR             5537..5794
                     /label=5' LTR (truncated)
                     /note="truncated 5' long terminal repeat (LTR) from HIV-1"
     enhancer        5796..6175
                     /label=CMV enhancer
                     /note="human cytomegalovirus immediate early enhancer"
     promoter        6206..6310
                     /gene="bla"
                     /label=AmpR promoter
     CDS             join(6311..6379,6380..7171)
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     complement(6529..6548)
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
ORIGIN
        1 ttgagatcct ttttttctgc gcgtaatctg ctgcttgcaa acaaaaaaac caccgctacc
       61 agcggtggtt tgtttgccgg atcaagagct accaactctt tttccgaagg taactggctt
      121 cagcagagcg cagataccaa atactgttct tctagtgtag ccgtagttag gccaccactt
      181 caagaactct gtagcaccgc ctacatacct cgctctgcta atcctgttac cagtggctgc
      241 tgccagtggc gataagtcgt gtcttaccgg gttggactca agacgatagt taccggataa
      301 ggcgcagcgg tcgggctgaa cggggggttc gtgcacacag cccagcttgg agcgaacgac
      361 ctacaccgaa ctgagatacc tacagcgtga gctatgagaa agcgccacgc ttcccgaagg
      421 gagaaaggcg gacaggtatc cggtaagcgg cagggtcgga acaggagagc gcacgaggga
      481 gcttccaggg ggaaacgcct ggtatcttta tagtcctgtc gggtttcgcc acctctgact
      541 tgagcgtcga tttttgtgat gctcgtcagg ggggcggagc ctatggaaaa acgccagcaa
      601 cgcggccttt ttacggttcc tggccttttg ctggcctttt gctcacatgt tctttcctgc
      661 gttatcccct gattctgtgg ataaccgtat taccgccttt gagtgagctg ataccgctcg
      721 ccgcagccga acgaccgagc gcagcgagtc agtgagcgag gaagcggaag agcgcccaat
      781 acgcaaaccg cctctccccg cgcgttggcc gattcattaa tgcagcggat ccagacatga
      841 taagatacat tgatgagttt ggacaaacca caactagaat gcagtgaaaa aaatgcttta
      901 tttgtgaaat ttgtgatgct attgctttat ttgtaaccat tataagctgc aataaacaag
      961 ttagcttttt gcaaaagcct aggcctccaa aaaagcctcc tcactacttc tggaatagct
     1021 cagaggccga ggcggcctcg gcctctgcat aaataaaaaa aattagtcag ccatggggcg
     1081 gagaatgggc ggaactgggc ggagttaggg gcgggatggg cggagttagg ggcgggacta
     1141 tggttgctga ctaattgaga tgcggatccg ctggcacgac aggtttcccg actggaaagc
     1201 gggcagtgag cgcaacgcaa ttaatgtgag ttagctcact cattaggcac cccaggcttt
     1261 acactttatg cttccggctc gtatgttgtg tggaattgtg agcggataac aatttcacac
     1321 aggaaacagc tatgaccatg attacgccaa gcttgggctg caggtcgagg gatctccata
     1381 agagaagagg gacagctatg actgggagta gtcaggagag gaggaaaaat ctggctagta
     1441 aaacatgtaa ggaaaatttt agggatgtta aagaaaaaaa taacacaaaa caaaatataa
     1501 aaaaaatcta acctcaagtc aaggcttttc tatggaataa ggaatggaca gcagggggct
     1561 gtttcatata ctgatgacct ctttatagcc aacctttgtt catggcagcc agcatatggg
     1621 catatgttgc caaactctaa accaaatact cattctgatg ttttaaatga tttgccctcc
     1681 catatgtcct tccgagtgag agacacaaaa aattccaaca cactattgca atgaaaataa
     1741 atttccttta ttagccagaa gtcagatgct caaggggctt catgatgtcc ccataatttt
     1801 tggcagaggg aaaaagatct gctagctcga gcagctgaag ctttattgag gcttaagcag
     1861 tgggttccct agttagccag agagctccca ggctcagatc tggtctaacc agagagaccc
     1921 agtacaggca aaaagcagat cttgtcttct ttgggagtga attagccctt ccagtccccc
     1981 cttttctttt aaaaagtggc taagatctac agctgccttg taagtcattg gtcttaaagg
     2041 taccgtaatc ttatctagaa ccggttcatg acttagcgtt tgtgttgggg ggagaaattt
     2101 gttgctctgc tgattccgaa cggctgaaat agcccgagtc ggtactccct tttgagtgag
     2161 gggataacag attcaaactc ggttcagaat cctgcccctt tttctcactc aagcgtaatg
     2221 caagtttttg ctttacagta tgtgaatcgt cggctttagt attcagtgaa gggtttggca
     2281 acatatcagg tccaatatat tggctactct catttggcaa aggaatcccc cgggaagcgg
     2341 ccgcacttcc cccggagcct ccgcttccgc ccttgtacag ctcgtccatg ccgagagtga
     2401 tcccggcggc ggtcacgaac tccagcagga ccatgtgatc gcgcttctcg ttggggtctt
     2461 tgctcagctt ggactgggtg ctcaggtagt ggttgtcggg cagcagcacg gggccgtcgc
     2521 cgatgggggt gttctgctgg tagtggtcgg cgagctgcac gctgccgtcc tcgatgttgt
     2581 ggcggatctt gaagttcacc ttgatgccgt tcttctgctt gtcggccatg atatagacgt
     2641 tgtggctgtt gtagttgtac tccagcttgt gccccaggat gttgccgtcc tccttgaagt
     2701 cgatgccctt cagctcgatg cggttcacca gggtgtcgcc ctcgaacttc acctcggcgc
     2761 gggtcttgta gttgccgtcg tccttgaaga agatggtgcg ctcctggacg tagccttcgg
     2821 gcatggcgga cttgaagaag tcgtgctgct tcatgtggtc ggggtagcgg ctgaagcact
     2881 gcacgccgta ggtcagggtg gtcacgaggg tgggccaggg cacgggcagc ttgccggtgg
     2941 tgcagatgaa cttcagggtc agcttgccgt aggtggcatc gccctcgccc tcgccggaca
     3001 cgctgaactt gtggccgttt acgtcgccgt ccagctcgac caggatgggc accaccccgg
     3061 tgaacagctc ctcgcccttg ctcaccatgg tggcgaccgg tggatcccgg gcccgcggta
     3121 ccgtcgactg cagaattcgg ttcactaaac gagcccggtt cactaaacga gctctgctta
     3181 tatagacctc ccaccgtaca cgcctaccgc ccatttgcgt caatggggcg gagttgttac
     3241 gacattttgg aaagtcccgt tgattttggt gccaaaacaa actcccattg acgtcaatgg
     3301 ggtggagact tggaaatccc cgtgagtcaa accgctatcc acgcccattg atgtactgcc
     3361 aaaaccgcat caccatggta atagcgatga ctaatacgta gatgtactgc caagtaggaa
     3421 agtcccataa ggtcatgtac tgggcataat gccaggcggg ccatttaccg tcattgacgt
     3481 caataggggg cgtacttggc atatgataca cttgatgtac tgccaagtgg gcagtttacc
     3541 gtaaatactc cacccattga cgtcaatgga aagtccctat tggcgttact atgggaacat
     3601 acgtcattat tgacgtcaat gggcgggggt cgttgggcgg tcagccaggc gggccattta
     3661 ccgtaagtta tgtaacgcgg aactccatat atgggctatg aactaatgac cccgtaattg
     3721 attactatta ataactagca cgcgttcgaa gcttgagctc ggtcccctcg gggttgggag
     3781 gtgggtctga aacgataatg gtgaatatcc ctgcctaact ctattcacta tagaaagtac
     3841 agcaaaaact attcttaaac ctaccaagcc tcctactatc attatgaata attttatata
     3901 ccacagccaa tttgttatgt taaaccaatt ccacaaactt gcccatttat ctaattccaa
     3961 taattcttgt tcattctttt cttgctggtt ttgcgattct tcaattaagg agtgtattaa
     4021 gcttgtgtaa ttgttaattt ctctgtccca ctccatccag gtcgtgtgat tccaaatctg
     4081 ttccagagat ttattactcc aactagcatt ccaaggcaca gcagtggtgc aaatgagttt
     4141 tccagagcaa ccccaaatcc ccaggagctg ttgatccttt aggtatcttt ccacagccag
     4201 gattcttgcc tggagctgct tgatgcccca gactgtgagt tgcaacagat gctgttgcgc
     4261 ctcaatagcc ctcagcaaat tgttctgctg ctgcactata ccagacaata attgtctggc
     4321 ctgtaccgtc agcgtcattg acgctgcgcc catagtgctt cctgctgctc ccaagaaccc
     4381 aaggaacaaa gctcctattc ccactgctct tttttctctc tgcaccactc ttctctttgc
     4441 cttggtgggt gctactccta atggttcaat ttttactact ttatatttat ataattcact
     4501 tctccaattg tccctcatat ctcctcctta tggtgtttta ctaaactttt ccatgttcta
     4561 atcctcatcc tgtctacttg ccacacaatc atcacctgcc atctgttttc cataatccct
     4621 aatgatcttt gcttttcttc ttggcactac ttttatgtca ctattatctt gtattactac
     4681 tgccccttca cctttccaga ggagctttgc tggtcctttc caaagtggat ttctgctgtc
     4741 cctgtaataa acccgaaaat tttgaatttt tgtaatttgt ttttgtaatt ctttagtttg
     4801 tatgtctgtt gctattatgt ctactattct ttcccctgca ctgtaccccc caatcccccc
     4861 ttttctttta aaattgtgga tgaatactgc catttgtact gctgtcttaa gatgttcagc
     4921 ctgatctctt acctgtccta taattttctt taattcttta ttcatagatt ctactactcc
     4981 ttgactttgg ggattgtagg gaatttccag gtctgaagat cctgctgctt gctgtgcttt
     5041 tttcttactt ttgttttgct cttcctctat cttgtctaaa gcttccttgg tgtcttttat
     5101 ctctatcctt tgatgcacac aatagagggt tgctactgta ttatataatg atctaagttc
     5161 ttctgatcct gtctgaaggg atggttgtag ctgtcccagt atttgtctac agccttctga
     5221 tgtttctaac aggccagtat taactgcgaa tcgttctagc tccctgcttg cccatactat
     5281 atgttttaat ttatattttt tctttccccc tggccttaac cgaatttttt cccatcgcga
     5341 tctaattctc ccccgcttaa tactgacgct ctcgcaccca tctctctcct tctagcctcc
     5401 gctagtcaaa atttttggcg tactcaccag tcgccgcccc tcgcctcttg ccgtgcgcgc
     5461 ttcagcaagc cgagtcctgc gtcgagagag ctcctctggt ttccctttcg ctttcaagtc
     5521 cctgttcggg cgccactgct agagattttc cacactgact aaaagggtct gagggatctc
     5581 tagttaccag agtcacacaa cagacgggca cacactactt gaagcactca aggcaagctt
     5641 tattgaggct taagcagtgg gttccctagt tagccagaga gctcccaggc tcagatctgg
     5701 tctaaccaga gagacccagt acaggcaaaa agcagctgct tatatgcagg atctgagggc
     5761 tcgccactcc ccagtcccgc ccaggccacg cctcccatgg taatagcgat gactaatacg
     5821 tagatgtact gccaagtagg aaagtcccat aaggtcatgt actgggcata atgccaggcg
     5881 ggccatttac cgtcattgac gtcaataggg ggcgtacttg gcatatgata cacttgatgt
     5941 actgccaagt gggcagttta ccgtaaatac tccacccatt gacgtcaatg gaaagtccct
     6001 attggcgtta ctatgggaac atacgtcatt attgacgtca atgggcgggg gtcgttgggc
     6061 ggtcagccag gcgggccatt taccgtaagt tatgtaacgc ggaactccat atatgggcta
     6121 tgaactaatg accccgtaat tgattactat taataactag tcaataatca atgtcgaccc
     6181 aggtggcact tttcggggaa atgtgcgcgg aacccctatt tgtttatttt tctaaataca
     6241 ttcaaatatg tatccgctca tgagacaata accctgataa atgcttcaat aatattgaaa
     6301 aaggaagagt atgagtattc aacatttccg tgtcgccctt attccctttt ttgcggcatt
     6361 ttgccttcct gtttttgctc acccagaaac gctggtgaaa gtaaaagatg ctgaagatca
     6421 gttgggtgca cgagtgggtt acatcgaact ggatctcaac agcggtaaga tccttgagag
     6481 ttttcgcccc gaagaacgtt ttccaatgat gagcactttt aaagttctgc tatgtggcgc
     6541 ggtattatcc cgtattgacg ccgggcaaga gcaactcggt cgccgcatac actattctca
     6601 gaatgacttg gttgagtact caccagtcac agaaaagcat cttacggatg gcatgacagt
     6661 aagagaatta tgcagtgctg ccataaccat gagtgataac actgcggcca acttacttct
     6721 gacaacgatc ggaggaccga aggagctaac cgcttttttg cacaacatgg gggatcatgt
     6781 aactcgcctt gatcgttggg aaccggagct gaatgaagcc ataccaaacg acgagcgtga
     6841 caccacgatg cctgtagcaa tggcaacaac gttgcgcaaa ctattaactg gcgaactact
     6901 tactctagct tcccggcaac aattaataga ctggatggag gcggataaag ttgcaggacc
     6961 acttctgcgc tcggcccttc cggctggctg gtttattgct gataaatctg gagccggtga
     7021 gcgtgggtct cgcggtatca ttgcagcact ggggccagat ggtaagccct cccgtatcgt
     7081 agttatctac acgacgggga gtcaggcaac tatggatgaa cgaaatagac agatcgctga
     7141 gataggtgcc tcactgatta agcattggta actgtcagac caagtttact catatatact
     7201 ttagattgat ttaaaacttc atttttaatt taaaaggatc taggtgaaga tcctttttga
     7261 taatctcatg accaaaatcc cttaacgtga gttttcgttc cactgagcgt cagaccccgt
     7321 agaaaagatc aaaggatctt c
//
