LOCUS       sequence-65061-e        8909 bp    DNA     circular SYN 15-DEC-2025
DEFINITION  synthetic circular DNA
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 8909)
  AUTHORS   Bakolitsa C, Cohen DM, Bankston LA, Bobkov AA, Cadwell GW, Jennings 
            L, Critchley DR, Craig SW, Liddington RC
  TITLE     Structural basis for vinculin activation at sites of cell adhesion.
  JOURNAL   Nature. 2004 Jul 29;430(6999):583-6. Epub 2004 Jun 13.
  PUBMED    15195105
REFERENCE   2  (bases 1 to 8909)
  AUTHORS   .
  TITLE     Direct Submission
  JOURNAL   Exported Dec 15, 2025 from SnapGene Server 8.0.1
            https://www.snapgene.com
COMMENT     SGRef: number: 1; type: "Journal Article"; journalName: "Nature."; 
            date: "2004-07-29"; volume: "430(6999)"; pages: "583-6. Epub 2004 
            Jun 13"
COMMENT     Sequence Label: pET15b/GgVcl 1-1066 (full length)
FEATURES             Location/Qualifiers
     source          1..8909
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     primer_bind     complement(18..36)
                     /label=pBRforEco
                     /note="pBR322 vectors, upsteam of EcoRI site, forward 
                     primer"
     promoter        104..208
                     /gene="bla"
                     /label=AmpR promoter
     CDS             join(209..277,278..1069)
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /label=AmpR
                     /note="confers resistance to ampicillin, carbenicillin, and
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     primer_bind     complement(427..446)
                     /label=Amp-R
                     /note="Ampicillin resistance gene, reverse primer"
     rep_origin      1240..1828
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     primer_bind     1729..1748
                     /label=pBR322ori-F
                     /note="pBR322 origin, forward primer"
     primer_bind     1982..1999
                     /label=L4440
                     /note="L4440 vector, forward primer"
     misc_feature    2014..2156
                     /label=bom
                     /note="basis of mobility region from pBR322"
     primer_bind     complement(2082..2101)
                     /label=pRS-marker
                     /note="pRS vectors, use to sequence yeast selectable 
                     marker"
     primer_bind     2242..2264
                     /label=pGEX 3'
                     /note="pGEX vectors, reverse primer"
     CDS             complement(2258..2449)
                     /codon_start=1
                     /gene="rop"
                     /product="Rop protein, which maintains plasmids at low copy
                     number"
                     /label=rop
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGENL"
     CDS             complement(3761..4843)
                     /codon_start=1
                     /gene="lacI"
                     /product="lac repressor"
                     /label=lacI
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
                     /translation="MKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAEL
                     NYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGV
                     EACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSH
                     EDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSA
                     MSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSC
                     YIPPLTTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPNTQTASPR
                     ALADSLMQLARQVSRLESGQ"
     primer_bind     4805..4824
                     /label=LacI-R
                     /note="LacI, reverse primer"
     promoter        complement(4844..4921)
                     /gene="lacI"
                     /label=lacI promoter
     primer_bind     5127..5146
                     /label=pBRrevBam
                     /note="pBR322 vectors, tet region, downstream of BamHI, 
                     reverse primer"
     primer_bind     5230..5249
                     /label=T7
                     /note="T7 promoter, forward primer"
     promoter        5230..5248
                     /label=T7 promoter
                     /note="promoter for bacteriophage T7 RNA polymerase"
     protein_bind    5249..5273
                     /label=lac operator
                     /bound_moiety="lac repressor encoded by lacI"
                     /note="The lac repressor binds to the lac operator to 
                     inhibit transcription in E. coli. This inhibition can be 
                     relieved by adding lactose or 
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     RBS             5288..5310
                     /note="efficient ribosome binding site from bacteriophage 
                     T7 gene 10 (Olins and Rangwala, 1989)"
     CDS             5329..5346
                     /codon_start=1
                     /product="6xHis affinity tag"
                     /label=6xHis
                     /translation="HHHHHH"
     CDS             5356..5373
                     /codon_start=1
                     /product="thrombin recognition and cleavage site"
                     /label=thrombin site
                     /translation="LVPRGS"
     primer_bind     complement(8636..8654)
                     /label=T7 Term
                     /note="T7 terminator, reverse primer"
     terminator      8650..8697
                     /label=T7 terminator
                     /note="transcription terminator for bacteriophage T7 RNA 
                     polymerase"
     promoter        complement(join(8872..8877,8878..8894,8895..8900))
                     /label=tet promoter
                     /note="E. coli promoter for tetracycline efflux protein 
                     gene"
ORIGIN
        1 ttcttgaaga cgaaagggcc tcgtgatacg cctattttta taggttaatg tcatgataat
       61 aatggtttct tagacgtcag gtggcacttt tcggggaaat gtgcgcggaa cccctatttg
      121 tttatttttc taaatacatt caaatatgta tccgctcatg agacaataac cctgataaat
      181 gcttcaataa tattgaaaaa ggaagagtat gagtattcaa catttccgtg tcgcccttat
      241 tccctttttt gcggcatttt gccttcctgt ttttgctcac ccagaaacgc tggtgaaagt
      301 aaaagatgct gaagatcagt tgggtgcacg agtgggttac atcgaactgg atctcaacag
      361 cggtaagatc cttgagagtt ttcgccccga agaacgtttt ccaatgatga gcacttttaa
      421 agttctgcta tgtggcgcgg tattatcccg tgttgacgcc gggcaagagc aactcggtcg
      481 ccgcatacac tattctcaga atgacttggt tgagtactca ccagtcacag aaaagcatct
      541 tacggatggc atgacagtaa gagaattatg cagtgctgcc ataaccatga gtgataacac
      601 tgcggccaac ttacttctga caacgatcgg aggaccgaag gagctaaccg cttttttgca
      661 caacatgggg gatcatgtaa ctcgccttga tcgttgggaa ccggagctga atgaagccat
      721 accaaacgac gagcgtgaca ccacgatgcc tgcagcaatg gcaacaacgt tgcgcaaact
      781 attaactggc gaactactta ctctagcttc ccggcaacaa ttaatagact ggatggaggc
      841 ggataaagtt gcaggaccac ttctgcgctc ggcccttccg gctggctggt ttattgctga
      901 taaatctgga gccggtgagc gtgggtctcg cggtatcatt gcagcactgg ggccagatgg
      961 taagccctcc cgtatcgtag ttatctacac gacggggagt caggcaacta tggatgaacg
     1021 aaatagacag atcgctgaga taggtgcctc actgattaag cattggtaac tgtcagacca
     1081 agtttactca tatatacttt agattgattt aaaacttcat ttttaattta aaaggatcta
     1141 ggtgaagatc ctttttgata atctcatgac caaaatccct taacgtgagt tttcgttcca
     1201 ctgagcgtca gaccccgtag aaaagatcaa aggatcttct tgagatcctt tttttctgcg
     1261 cgtaatctgc tgcttgcaaa caaaaaaacc accgctacca gcggtggttt gtttgccgga
     1321 tcaagagcta ccaactcttt ttccgaaggt aactggcttc agcagagcgc agataccaaa
     1381 tactgtcctt ctagtgtagc cgtagttagg ccaccacttc aagaactctg tagcaccgcc
     1441 tacatacctc gctctgctaa tcctgttacc agtggctgct gccagtggcg ataagtcgtg
     1501 tcttaccggg ttggactcaa gacgatagtt accggataag gcgcagcggt cgggctgaac
     1561 ggggggttcg tgcacacagc ccagcttgga gcgaacgacc tacaccgaac tgagatacct
     1621 acagcgtgag ctatgagaaa gcgccacgct tcccgaaggg agaaaggcgg acaggtatcc
     1681 ggtaagcggc agggtcggaa caggagagcg cacgagggag cttccagggg gaaacgcctg
     1741 gtatctttat agtcctgtcg ggtttcgcca cctctgactt gagcgtcgat ttttgtgatg
     1801 ctcgtcaggg gggcggagcc tatggaaaaa cgccagcaac gcggcctttt tacggttcct
     1861 ggccttttgc tggccttttg ctcacatgtt ctttcctgcg ttatcccctg attctgtgga
     1921 taaccgtatt accgcctttg agtgagctga taccgctcgc cgcagccgaa cgaccgagcg
     1981 cagcgagtca gtgagcgagg aagcggaaga gcgcctgatg cggtattttc tccttacgca
     2041 tctgtgcggt atttcacacc gcatatatgg tgcactctca gtacaatctg ctctgatgcc
     2101 gcatagttaa gccagtatac actccgctat cgctacgtga ctgggtcatg gctgcgcccc
     2161 gacacccgcc aacacccgct gacgcgccct gacgggcttg tctgctcccg gcatccgctt
     2221 acagacaagc tgtgaccgtc tccgggagct gcatgtgtca gaggttttca ccgtcatcac
     2281 cgaaacgcgc gaggcagctg cggtaaagct catcagcgtg gtcgtgaagc gattcacaga
     2341 tgtctgcctg ttcatccgcg tccagctcgt tgagtttctc cagaagcgtt aatgtctggc
     2401 ttctgataaa gcgggccatg ttaagggcgg ttttttcctg tttggtcact gatgcctccg
     2461 tgtaaggggg atttctgttc atgggggtaa tgataccgat gaaacgagag aggatgctca
     2521 cgatacgggt tactgatgat gaacatgccc ggttactgga acgttgtgag ggtaaacaac
     2581 tggcggtatg gatgcggcgg gaccagagaa aaatcactca gggtcaatgc cagcgcttcg
     2641 ttaatacaga tgtaggtgtt ccacagggta gccagcagca tcctgcgatg cagatccgga
     2701 acataatggt gcagggcgct gacttccgcg tttccagact ttacgaaaca cggaaaccga
     2761 agaccattca tgttgttgct caggtcgcag acgttttgca gcagcagtcg cttcacgttc
     2821 gctcgcgtat cggtgattca ttctgctaac cagtaaggca accccgccag cctagccggg
     2881 tcctcaacga caggagcacg atcatgcgca cccgtggcca ggacccaacg ctgcccgaga
     2941 tgcgccgcgt gcggctgctg gagatggcgg acgcgatgga tatgttctgc caagggttgg
     3001 tttgcgcatt cacagttctc cgcaagaatt gattggctcc aattcttgga gtggtgaatc
     3061 cgttagcgag gtgccgccgg cttccattca ggtcgaggtg gcccggctcc atgcaccgcg
     3121 acgcaacgcg gggaggcaga caaggtatag ggcggcgcct acaatccatg ccaacccgtt
     3181 ccatgtgctc gccgaggcgg cataaatcgc cgtgacgatc agcggtccag tgatcgaagt
     3241 taggctggta agagccgcga gcgatccttg aagctgtccc tgatggtcgt catctacctg
     3301 cctggacagc atggcctgca acgcgggcat cccgatgccg ccggaagcga gaagaatcat
     3361 aatggggaag gccatccagc ctcgcgtcgc gaacgccagc aagacgtagc ccagcgcgtc
     3421 ggccgccatg ccggcgataa tggcctgctt ctcgccgaaa cgtttggtgg cgggaccagt
     3481 gacgaaggct tgagcgaggg cgtgcaagat tccgaatacc gcaagcgaca ggccgatcat
     3541 cgtcgcgctc cagcgaaagc ggtcctcgcc gaaaatgacc cagagcgctg ccggcacctg
     3601 tcctacgagt tgcatgataa agaagacagt cataagtgcg gcgacgatag tcatgccccg
     3661 cgcccaccgg aaggagctga ctgggttgaa ggctctcaag ggcatcggtc gagatcccgg
     3721 tgcctaatga gtgagctaac ttacattaat tgcgttgcgc tcactgcccg ctttccagtc
     3781 gggaaacctg tcgtgccagc tgcattaatg aatcggccaa cgcgcgggga gaggcggttt
     3841 gcgtattggg cgccagggtg gtttttcttt tcaccagtga gacgggcaac agctgattgc
     3901 ccttcaccgc ctggccctga gagagttgca gcaagcggtc cacgctggtt tgccccagca
     3961 ggcgaaaatc ctgtttgatg gtggttaacg gcgggatata acatgagctg tcttcggtat
     4021 cgtcgtatcc cactaccgag atatccgcac caacgcgcag cccggactcg gtaatggcgc
     4081 gcattgcgcc cagcgccatc tgatcgttgg caaccagcat cgcagtggga acgatgccct
     4141 cattcagcat ttgcatggtt tgttgaaaac cggacatggc actccagtcg ccttcccgtt
     4201 ccgctatcgg ctgaatttga ttgcgagtga gatatttatg ccagccagcc agacgcagac
     4261 gcgccgagac agaacttaat gggcccgcta acagcgcgat ttgctggtga cccaatgcga
     4321 ccagatgctc cacgcccagt cgcgtaccgt cttcatggga gaaaataata ctgttgatgg
     4381 gtgtctggtc agagacatca agaaataacg ccggaacatt agtgcaggca gcttccacag
     4441 caatggcatc ctggtcatcc agcggatagt taatgatcag cccactgacg cgttgcgcga
     4501 gaagattgtg caccgccgct ttacaggctt cgacgccgct tcgttctacc atcgacacca
     4561 ccacgctggc acccagttga tcggcgcgag atttaatcgc cgcgacaatt tgcgacggcg
     4621 cgtgcagggc cagactggag gtggcaacgc caatcagcaa cgactgtttg cccgccagtt
     4681 gttgtgccac gcggttggga atgtaattca gctccgccat cgccgcttcc actttttccc
     4741 gcgttttcgc agaaacgtgg ctggcctggt tcaccacgcg ggaaacggtc tgataagaga
     4801 caccggcata ctctgcgaca tcgtataacg ttactggttt cacattcacc accctgaatt
     4861 gactctcttc cgggcgctat catgccatac cgcgaaaggt tttgcgccat tcgatggtgt
     4921 ccgggatctc gacgctctcc cttatgcgac tcctgcatta ggaagcagcc cagtagtagg
     4981 ttgaggccgt tgagcaccgc cgccgcaagg aatggtgcat gcaaggagat ggcgcccaac
     5041 agtcccccgg ccacggggcc tgccaccata cccacgccga aacaagcgct catgagcccg
     5101 aagtggcgag cccgatcttc cccatcggtg atgtcggcga tataggcgcc agcaaccgca
     5161 cctgtggcgc cggtgatgcc ggccacgatg cgtccggcgt agaggatcga gatctcgatc
     5221 ccgcgaaatt aatacgactc actatagggg aattgtgagc ggataacaat tcccctctag
     5281 aaataatttt gtttaacttt aagaaggaga tataccatgg gcagcagcca tcatcatcat
     5341 catcacagca gcggcctggt gccgcgcggc agccatatga tgcccgtctt ccacacgcgc
     5401 accatcgaga gcatcttgga gcccgtggct cagcagatct cccacctggt catcatgcac
     5461 gaggaggggg aggtagacgg caaggccatc ccggacctca ccgcccccgt gtcggccgtg
     5521 caggccgctg tcagcaacct ggtgcgggtt ggaaaagaaa ctgtgcagac aacagaagac
     5581 cagatcttga aaagggatat gccaccagca ttcatcaaag tagagaatgc ctgcaccaag
     5641 ctcgttcgag cagcccagat gctgcaagca gatccttatt cagtaccagc tcgtgactac
     5701 ctaattgatg gatcaagagg catcctttct ggaacatcag acttacttct gacatttgat
     5761 gaagcggagg tccgtaaaat catccgtgtc tgcaaaggaa tattggaata tctgactgtg
     5821 gcagaagtag tagagactat ggaggatttg gtgacatata caaagaatct agggccagga
     5881 atgacaaaga tggcgaaaat gatcgatgag agacaacagg aattaactca tcaggaacat
     5941 agggttatgc tggtgaactc catgaatact gtgaaggagc tattgcctgt acttatttca
     6001 gctatgaaga tctttgtaac cacaaaaaac actaaaagcc agggaataga agaggccttg
     6061 aaaaatcgca atttcacagt agagaaaatg agtgctgaga taaatgaaat aatccgtgta
     6121 ttacaactca cttcctggga tgaagatgcc tgggccagca aggacactga agccatgaaa
     6181 agagctttag ccctaataga ttcaaagatg aaccaggcaa aaggctggct gagagatcca
     6241 aacgcacctc caggggatgc tggtgagcaa gcaataaggc agatccttga tgaagctgga
     6301 aaagcaggag aattgtgtgc aggcaaagaa cgcagggaga ttctgggaac atgcaaaact
     6361 ttgggccaaa tgactgatca acttgctgat ctccgagcta gaggacaggg tgctacaccg
     6421 atggcaatgc agaaggcaca gcaggtgtca caaggcctgg atttgctcac tgcaaaagtg
     6481 gagaatgcag cccggaaatt ggaggccatg acaaactcta agcaggctat tgcaaagaag
     6541 attgatgctg ctcagaactg gcttgcggat cccaacggcg gaagtgaagg agaagaacac
     6601 attcgaggaa ttatgtctga agcaaggaaa gttgcagaat tgtgtgagga gcctaaagaa
     6661 agagatgata tccttcgctc cttgggggaa atctctgctc tgacagctaa gctgtcagat
     6721 ctgcgacgac atgggaaagg cgactctcct gaggcccgtg cattggccaa gcaaatagct
     6781 acatcacttc agaacttaca gtccaaaaca aacagagctg tagcaaatac taggccagtt
     6841 aaagctgctg tccatttgga gggcaagatt gagcaagccc agaggtggat agataatcct
     6901 acagttgatg atcggggagt aggccaggca gcaattcggg gtttggttgc agaaggtcgt
     6961 cgtctagcca atgtcatgat gggaccttat cgtcaggacc tgcttgccaa atgtgaccgt
     7021 gtagaccagc tggctgctca gcttgctgac cttgcagcaa gaggggaagg agagtctcct
     7081 caggctaggg caattgctgc tcagcttcag gactccctga aggatctcaa agcacggatg
     7141 caagaagcaa tgacccagga ggtgtctgat gttttcagtg acactacaac ccctattaag
     7201 ttgttagcag tagcagccac tgctccttct gatactccca atagagaaga ggtgtttgaa
     7261 gaaagagcag caaattttga aaaccatgct gctagactgg gagcaacagc agaaaaagca
     7321 gctgcagttg gaactgctaa taaaactact gtggaaggca ttcaggcaac agtcaaatct
     7381 gcaagggagc ttacaccaca ggtagtatcg gctgctcgaa tcctcctgag aaatcctgga
     7441 aatcaagctg cttatgagca ttttgagaca atgaaaaacc aatggattga taatgtagaa
     7501 aagatgacag ggctggtgga tgaggccatc gataccaagt ctctgttgga tgcatcagaa
     7561 gaggctatta agaaggatct tgataaatgc aaagttgcaa tggccaatat gcaacctcag
     7621 atgctggtag ctggagccac cagcattgct agacgagcga accgcatcct gcttgtggca
     7681 aaacgggagg ttgaaaattc agaagaccct aaattcaggg aggctgttaa agcagcttct
     7741 gatgagctga gcaaaaccat atcaccgatg gtaatggatg ctaaagctgt agcaggaaat
     7801 atctctgatc ctggtttgca gaagagtttc ttggattctg gatacaggat tctgggagct
     7861 gtggccaaag tcagagaagc ctttcagcct caggagccag actttccccc tcctcctcct
     7921 gacctagagc atctccatct gactgatgag cttgctcctc caaaaccacc acttccagaa
     7981 ggtgaggttc ccccacccag accaccaccc cctgaagaaa aagatgagga gttcccagag
     8041 cagaaagcag gagaagctat taatcagccc atgatgatgg ctgctaggca gttgcatgac
     8101 gaggctcgga aatggtctag caagggtaac gacatcattg ctgctgctaa acgaatggcg
     8161 ctgctcatgg ctgagatgtc acgcctggtg cgaggaggca gcggaaacaa gcgtgccctc
     8221 atccagtgtg caaaagatat tgctaaggca tcggatgaag tcactcgatt ggccaaagag
     8281 gtggccaagc aatgtactga taaacgcatt agaacaaacc tcttacaggt ctgtgagcga
     8341 atcccaacca tcagcacgca gctcaaaatt ctttccacag tgaaagctac catgctgggc
     8401 aggactaaca tcagcgatga agaatcagaa caggcaactg agatgttggt tcataacgcc
     8461 cagaacctca tgcagtctgt gaaggaaact gtgagagaag ctgaagcagc atccattaag
     8521 ataagaacag atgccggatt cactctgcgc tgggtcagaa agaccccatg gtatcagtag
     8581 ctcgaggatc cggctgctaa caaagcccga aaggaagctg agttggctgc tgccaccgct
     8641 gagcaataac tagcataacc ccttggggcc tctaaacggg tcttgagggg ttttttgctg
     8701 aaaggaggaa ctatatccgg atatcccgca agaggcccgg cagtaccggc ataaccaagc
     8761 ctatgcctac agcatccagg gtgacggtgc cgaggatgac gatgagcgca ttgttagatt
     8821 tcatacacgg tgcctgactg cgttagcaat ttaactgtga taaactaccg cattaaagct
     8881 tatcgatgat aagctgtcaa acatgagaa
//
