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We narrowed to 48 results for: codon optimized

Showing: 21 - 40 of 48 results

  1. 28 Hot Plasmid Technologies from 2015

    Type
    Blog Post
    Published
    Dec. 23, 2015, 3:30 p.m.
    ...resistance gene (missing the first two codons). Two stop codons are inserted between the truncated gene...removing the stop codons during backbone digestion and providing the missing codons for functional antibiotic...-specific reverse primer containing the missing codons from the antibiotic resistance cassette, a ribosome...formed from primer dimers and containing the missing codons from the antibiotic resistance gene is inserted...the mRNA since they are tethered AFTER the stop codon. Thus a non-translated mRNA will appear yellow, ...variety of bio-orthogonal UAAs via a re-assigned stop codon (TAG). This polyspecificity enables the site-specific...in constitutive splicing studies and has been optimized for high efficiency splicing. If intron splicing...

  2. Hot Plasmids: Fall 2024

    Type
    Blog Post
    Published
    Nov. 21, 2024, 1:30 p.m.
    ...sequences for mScarlet3 and mScarlet-I3 that were codon-optimized for C. elegans and included artificial introns... for structural studies of E3 ligase cereblon Optimized mScarlet-based tags for live imaging in C. elegans.../10.1038/s41467-024-52871-9. PMID 39406745. Optimizing mScarlet tags for live imaging in C. elegans ...mScarlet3 was 50% brighter than the original worm-optimized wrmScarlet. mScarlet-I3, while initially dimmer... et al., 2024 under CC-BY license.  These optimized fluorescent proteins will be a useful addition...

  3. A Practical Guide to Optimizing AAV DIO and FLEx Vector Expression

    Type
    Blog Post
    Published
    Nov. 2, 2021, 1:15 p.m.
    ...information.  Optimize titer for the DIO/FLEx vector Once you have determined the optimal injection parameters...begin to optimize the DIO/FLEx vector. This step is essentially the same as what was used to optimize the ...the causes of off-target expression and ways to optimize experiments to minimize it. Overview of DIO/FLEx...frt-STOP-frt (FSF) sequence prior to an ATG start codon to prevent transcription in cells where the recombinase...created with BioRender.com   Strategies for optimizing expression So now that we know spontaneous recombination...promoter with in vivo experiments to determine the optimal/minimal injection titer and volume needed to achieve... injection titers and volumes to determine the optimal injection parameters needed to transduce your cells...

  4. How to Design Your gRNA for CRISPR Genome Editing

    Type
    Blog Post
    Published
    Sept. 24, 2020, 1:15 p.m.
    ...the TSS but you can worry less about sequence optimality because you generally have fewer sequences to...alternative ATG downstream of the annotated start codon. Likewise, we avoid target sites that code for amino...so many possibilities, picking a gRNA with an optimized sequence is of primary importance (more on this... for this technology, and the user may need to optimize numerous parameters to generate the desired edit...have a dozen or so gRNAs to choose from in the optimal location. It is also important to have good information...approximately equal importance in design – an optimized sequence will do little if it is in the wrong ...there are fewer gRNA to choose from, and thus an optimal sequence may not be available. Predicting gRNA ...

  5. Plasmids 101: Common Lab E. coli Strains

    Type
    Blog Post
    Published
    Nov. 7, 2014, 2:56 p.m.
    ...UAG) stop codon by glutamine insertion supF (tyrT)   Suppression of the amber (UAG) stop codon by tyrosine...designing your plasmid – you carefully selected the optimal promoter for your gene of interest, painstakingly...

  6. No Llamas Required - Synthetic Nanobodies Against Membrane Proteins

    Type
    Blog Post
    Published
    June 18, 2020, 1:15 p.m.
    ...without the need to find a llama farm! To find an optimally binding sybody, you want to start out with a large...protocol goes through 3 major steps to select for optimal sybody candidates. Figure 2: Outline of the...mRNA molecule in the library doesn’t encode a stop codon, which causes the ribosome to pause at the end of...

  7. 5 Great Apps for Lab Life

    Type
    Blog Post
    Published
    Sept. 22, 2016, 2:30 p.m.
    ... Lastly, the Tm calculator helps you set up an optimal PCR depending on the primer sequence and the NEB...pyrrolysine. I have found myself wishing that it had a codon list for each amino acid, but, overall AMINO can...

  8. Easi-CRISPR: Generating Knock-In and Conditional Mouse Models

    Type
    Blog Post
    Published
    April 5, 2018, 12:42 p.m.
    ...guide that directs cleavage right before the stop codon!  Figure 3: How to design a C-terminal insertion...would be selected, since it cleaves at the stop codon TAG. Design your repair template with 55-100...template with 55-100 bp homology on each side. For optimal repair, place the loxP sites precisely at the cut...

  9. 15 Years of Addgene: The Top 15 Plasmids

    Type
    Blog Post
    Published
    Jan. 8, 2019, 1:54 p.m.
    ...For use in human cell lines, the Zhang lab codon-optimized SpCas9. Using the BbsI restriction site, a ...

  11. 27 Hot Plasmids from 2016

    Type
    Blog Post
    Published
    Dec. 22, 2016, 3:03 p.m.
    ...arrestin recruitment assay incorporating 314 codon-optimized GPCR sequences for human cell line expression...provided in both open (no stop codon) and closed (including a stop codon) formats. The collection is compatible...directly for drug screening or easily shuttle the optimized, expression validated GPCR sequences to any desired...strains remains seriously limited, as prior optimizations are required for each individual target species...being generated, there is a need for genetic optimization of industrial yeast strains. However, industrial... the well-known yeast two-hybrid assay are not optimal for studying native mammalian protein interactions...transfer vector for in-vivo expression and plasmids optimized for dCas9-VPR expression in drosophila and yeast...

  13. Advanced Uses of Cre-lox and Flp-FRT - A Neuroscientist’s View

    Type
    Blog Post
    Published
    Oct. 19, 2017, 1:54 p.m.
    ...less efficient than Cre recombinase. FLPe codon optimization resulted in FLPO, which shows similar efficiency...loxP sites (For details see Cre-lox blog post). Optimizing FLP FRT through smart engineering Different FLP...first version of FLP discovered has a temperature optimum of 30 °C and is therefore inefficient in mammalian...identification of FLPe which has a temperature optimum of 37 °C (Buchholz, Angrand, and Stewart 1998)....

  14. Troubleshooting and Optimizing a Western Blot

    Type
    Blog Post
    Published
    Sept. 17, 2024, 1:15 p.m.
    ...talk about western blot optimization and troubleshooting.   Before you can optimize or troubleshoot a western...backgrounds.  Once you’ve optimized antibody concentration, you can optimize ‌incubation conditions to...want to spend optimizing it. Blots for quantification generally require more optimization than blots used...with running a gradient, which will allow you to optimize the concentrations of your various blot reagents... a Western Blot post to make sure you have the optimal gel for your experiment.   Ladders If you need ...trickier than gels and may require multiple runs to optimize or troubleshoot.   Before you start… Mark your... semi-dry are not working, you’ll want to try optimizing your transfer buffer.  Adjusting the buffer For...

  15. Technologies Enabled by NanoLuc® Luciferase

    Type
    Blog Post
    Published
    Feb. 8, 2018, 12:17 p.m.
    ...technology platforms like HaloTag® Fusion Protein, codon-optimized Firefly luciferase genes (e.g., luc2), and ...issues as traditional luciferases emit at near optimal wavelengths (Fluc emits at 610 nm) and do not require... emission peak is at 460 nm thus making it non-optimal for in vivo imaging. The solution is to couple ...

  17. Hot Plasmids - October 2020

    Type
    Blog Post
    Published
    Oct. 13, 2020, 1:15 p.m.
    ...delivery. Get the plasmids at Addgene Sc++ is a codon-optimized, engineered Streptococcus canis Cas9 nuclease...

  18. CRISPR 101: Multiplex Expression of gRNAs

    Type
    Blog Post
    Published
    Sept. 10, 2020, 11:45 a.m.
    ...amplified for cloning into one of three Zeamays codon-optimized Cas9-containing binary vectors. The system ...follow these same assembly principles, but they’re optimized for different purposes.   Gersbach Lab multiplexing...destination vector based on pCAMBIA. Cas9 is plant-optimized, and plasmids are available for both monocot and... paper at Addgene. 10. Port, Fillip, et al. “Optimized CRISPR/Cas tools for efficient germline and somatic...Ronda, Carlotta, et al. (2016). "CRMAGE: CRISPR Optimized MAGE Recombineering." Sci Rep. 6:19452. PubMed...

  20. CRISPR 101: RNA Editing with Cas13

    Type
    Blog Post
    Published
    July 31, 2020, 12:30 p.m.
    ...pathogenic alleles, or introduce a premature stop codon to render an RNA nonfunctional. In their quest to...directed evolution across the full ADAR2DD to further optimize cytidine deaminase activity. While RESCUE can ...
Showing: 21 - 40 of 48 results