Analyze Sequence Guide

To analyze a sequence, paste your sequence into the box, then click Submit. You will have the following options:

• Enter a new sequence link: Start over
• Map and Features tab:
  This link will show a map of your sequence, with features and restriction sites listed below the map. Only commonly used enzymes are displayed. Use the links at the bottom to show or hide features.
• Sequence tab:
  • FASTA: View your sequence in FASTA format (not numbered).
  • GenBank: View your sequence in GenBank format (features listed, numbered).
  • Reverse Complement: View the reverse complement of your sequence.
• BLAST tab:
  • Determine what your sequence encodes by using BLASTN to search for a DNA match or BLASTX to search for a protein match.
• Align tab:
  • Compare your sequence to another sequence.
• Digest tab:
  • View restriction sites in your sequence. View unique cutters, non-cutters, and expected cut sites.
• Translate tab:
  • View open reading frames in your sequence with common tags highlighted. Also see a translation of your sequence in all reading frames.