Measuring transcription factor binding and gene expression using barcoded self-reporting transposon calling cards and transcriptomes.
Lalli M, Yen A, Thopte U, Dong F, Moudgil A, Chen X, Milbrandt J, Dougherty JD, Mitra RD
NAR Genom Bioinform. 2022 Aug 31;4(3):lqac061. doi: 10.1093/nargab/lqac061. eCollection 2022 Sep. PubMed Article
Lalli M, Yen A, Thopte U, Dong F, Moudgil A, Chen X, Milbrandt J, Dougherty JD, Mitra RD
NAR Genom Bioinform. 2022 Aug 31;4(3):lqac061. doi: 10.1093/nargab/lqac061. eCollection 2022 Sep. PubMed Article
Plasmids from Article
| ID | Plasmid | Purpose |
|---|---|---|
| 193143 | PB-SRT-Puro_BC1 | Barcoded piggyBac self-reporting transposon with puromycin marker for mammalian calling cards |
| 193144 | PB-SRT-Puro_BC2 | Barcoded piggyBac self-reporting transposon with puromycin marker for mammalian calling cards |
| 193145 | PB-SRT-Puro_BC3 | Barcoded piggyBac self-reporting transposon with puromycin marker for mammalian calling cards |
| 193146 | PB-SRT-Puro_BC4 | Barcoded piggyBac self-reporting transposon with puromycin marker for mammalian calling cards |
| 193147 | PB-SRT-Puro_BC5 | Barcoded piggyBac self-reporting transposon with puromycin marker for mammalian calling cards |
| 193148 | PB-SRT-Puro_BC6 | Barcoded piggyBac self-reporting transposon with puromycin marker for mammalian calling cards |
| 193149 | PB-SRT-Puro_BC7 | Barcoded piggyBac self-reporting transposon with puromycin marker for mammalian calling cards |
| 193150 | PB-SRT-Puro_BC8 | Barcoded piggyBac self-reporting transposon with puromycin marker for mammalian calling cards |
| 193151 | PB-SRT-Puro_BC9 | Barcoded piggyBac self-reporting transposon with puromycin marker for mammalian calling cards |
| 193152 | PB-SRT-Puro_BC10 | Barcoded piggyBac self-reporting transposon with puromycin marker for mammalian calling cards |
| 193153 | PB-SRT-Puro_BC11 | Barcoded piggyBac self-reporting transposon with puromycin marker for mammalian calling cards |
| 193154 | PB-SRT-Puro_BC12 | Barcoded piggyBac self-reporting transposon with puromycin marker for mammalian calling cards |
| 193155 | PB-SRT-Puro_BC13 | Barcoded piggyBac self-reporting transposon with puromycin marker for mammalian calling cards |
| 193156 | PB-SRT-Puro_BC14 | Barcoded piggyBac self-reporting transposon with puromycin marker for mammalian calling cards |
| 193157 | PB-SRT-Puro_BC15 | Barcoded piggyBac self-reporting transposon with puromycin marker for mammalian calling cards |
| 193158 | PB-SRT-Puro_BC16 | Barcoded piggyBac self-reporting transposon with puromycin marker for mammalian calling cards |
| 193159 | PB-SRT-Puro_BC17 | Barcoded piggyBac self-reporting transposon with puromycin marker for mammalian calling cards |
| 193160 | PB-SRT-Puro_BC18 | Barcoded piggyBac self-reporting transposon with puromycin marker for mammalian calling cards |
| 193161 | PB-SRT-Puro_BC19 | Barcoded piggyBac self-reporting transposon with puromycin marker for mammalian calling cards |
| 193162 | PB-SRT-Puro_BC20 | Barcoded piggyBac self-reporting transposon with puromycin marker for mammalian calling cards |
| 193163 | PB-SRT-Puro_BC21 | Barcoded piggyBac self-reporting transposon with puromycin marker for mammalian calling cards |
| 193164 | PB-SRT-Puro_BC22 | Barcoded piggyBac self-reporting transposon with puromycin marker for mammalian calling cards |
| 193165 | PB-SRT-Puro_BC23 | Barcoded piggyBac self-reporting transposon with puromycin marker for mammalian calling cards |
| 193166 | AAV-PB-SRT-tdTomato_BC1 | Barcoded piggyBac self-reporting transposon with tdTomato marker in AAV backbone |
| 193168 | AAV-PB-SRT-tdTomato_BC3 | Barcoded piggyBac self-reporting transposon with tdTomato marker in AAV backbone |
| 193169 | AAV-PB-SRT-tdTomato_BC4 | Barcoded piggyBac self-reporting transposon with tdTomato marker in AAV backbone |
| 193170 | AAV-PB-SRT-tdTomato_BC5 | Barcoded piggyBac self-reporting transposon with tdTomato marker in AAV backbone |
| 193171 | AAV-PB-SRT-tdTomato_BC6 | Barcoded piggyBac self-reporting transposon with tdTomato marker in AAV backbone |
| 193172 | AAV-PB-SRT-tdTomato_BC7 | Barcoded piggyBac self-reporting transposon with tdTomato marker in AAV backbone |
| 193174 | AAV-PB-SRT-tdTomato_BC11 | Barcoded piggyBac self-reporting transposon with tdTomato marker in AAV backbone |
| 193175 | AAV-PB-SRT-tdTomato_BC10 | Barcoded piggyBac self-reporting transposon with tdTomato marker in AAV backbone |
| 193176 | AAV-PB-SRT-tdTomato_BC9 | Barcoded piggyBac self-reporting transposon with tdTomato marker in AAV backbone |
| 193177 | AAV-PB-SRT-tdTomato_BC12 | Barcoded piggyBac self-reporting transposon with tdTomato marker in AAV backbone |
| 193178 | AAV-PB-SRT-tdTomato_BC13 | Barcoded piggyBac self-reporting transposon with tdTomato marker in AAV backbone |
| 193179 | AAV-PB-SRT-tdTomato_BC14 | Barcoded piggyBac self-reporting transposon with tdTomato marker in AAV backbone |
| 193180 | AAV-PB-SRT-tdTomato_BC15 | Barcoded piggyBac self-reporting transposon with tdTomato marker in AAV backbone |
| 193181 | AAV-PB-SRT-tdTomato_BC16 | Barcoded piggyBac self-reporting transposon with tdTomato marker in AAV backbone |
| 193182 | AAV-PB-SRT-tdTomato_BC17 | Barcoded piggyBac self-reporting transposon with tdTomato marker in AAV backbone |
| 193183 | AAV-PB-SRT-tdTomato_BC18 | Barcoded piggyBac self-reporting transposon with tdTomato marker in AAV backbone |
| 193185 | AAV-PB-SRT-tdTomato_BC20 | Barcoded piggyBac self-reporting transposon with tdTomato marker in AAV backbone |
| 193186 | AAV-PB-SRT-tdTomato_BC21 | Barcoded piggyBac self-reporting transposon with tdTomato marker in AAV backbone |
| 193187 | AAV-PB-SRT-tdTomato_BC22 | Barcoded piggyBac self-reporting transposon with tdTomato marker in AAV backbone |
| 193188 | AAV-PB-SRT-tdTomato_BC23 | Barcoded piggyBac self-reporting transposon with tdTomato marker in AAV backbone |