Simultaneous Pathway Activity Inference and Gene Expression Analysis Using RNA Sequencing.
O'Connell DJ, Kolde R, Sooknah M, Graham DB, Sundberg TB, Latorre IJ, Mikkelsen TS, Xavier RJ
Cell Syst. 2016 May 25;2(5):323-34. doi: 10.1016/j.cels.2016.04.011. Epub 2016 May 19. PubMed Article
O'Connell DJ, Kolde R, Sooknah M, Graham DB, Sundberg TB, Latorre IJ, Mikkelsen TS, Xavier RJ
Cell Syst. 2016 May 25;2(5):323-34. doi: 10.1016/j.cels.2016.04.011. Epub 2016 May 19. PubMed Article
Plasmids from Article
| ID | Plasmid | Purpose |
|---|---|---|
| 90335 | pLminP_Luc2P_RE1 | NFkB - p50/p65 pathway gene reporter |
| 90337 | pLminP_Luc2P_RE3 | AHR - Aryl hydrocarbon receptor gene reporter |
| 90338 | pLminP_Luc2P_RE4 | NRF2 - Antioxidant response element gene reporter |
| 90339 | pLminP_Luc2P_RE5 | STAT3 - Stat3 homodimer gene reporter |
| 90340 | pLminP_Luc2P_RE6 | STAT5 - Stat5 gene reporter |
| 90343 | pLminP_Luc2P_RE9 | HIF1a - Hypoxia gene reporter |
| 90344 | pLminP_Luc2P_RE10 | IRF3 - Viral response gene reporter |
| 90347 | pLminP_Luc2P_RE12 | FXR - Farnesoid X receptor gene reporter |
| 90348 | pLminP_Luc2P_RE13 | LXR - Liver X receptor gene reporter |
| 90349 | pLminP_Luc2P_RE14 | VDR - Vitamin D receptor gene reporter |
| 90354 | pLminP_Luc2P_RE15 | RARA - Retinoic acid receptor gene reporter |
| 90357 | pLminP_Luc2P_RE16 | CREB - Cyclic AMP gene reporter |
| 90359 | pLminP_Luc2P_RE17 | NFAT - PKC/Ca++ gene reporter |
| 90361 | pLminP_Luc2P_RE19 | Wnt - TCF/LEF gene reporter |
| 90363 | pLminP_Luc2P_RE21 | p53 - Apoptosis gene reporter |
| 90364 | pLminP_Luc2P_RE22 | STAT6 - Stat6 gene reporter |
| 90365 | pLminP_Luc2P_RE23 | ATF4 - Amino acid deprivation gene reporter |
| 90367 | pLminP_Luc2P_RE25 | Notch - NIDC/CBF1 gene reporter |
| 90368 | pLminP_Luc2P_RE26 | C/EBPb - CEBPB gene reporter |
| 90369 | pLminP_Luc2P_RE27 | Type II Interferon - STAT1/STAT1 gene reporter |
| 90370 | pLminP_Luc2P_RE28 | TFEB - Lysosomal biogenesis gene reporter |
| 90371 | pLminP_Luc2P_RE29 | SREBF1 - Sterol gene reporter |
| 90373 | pLminP_Luc2P_RE31 | Hippo - TEAD1 gene reporter |
| 90376 | pLminP_Luc2P_RE34 | MAPK - Elk1 gene reporter |
| 90378 | pLminP_Luc2P_RE38 | RELB - NFkB gene reporter |
| 90379 | pLminP_Luc2P_RE39 | PPARg - PPARg homodimer gene reporter |
| 90380 | pLminP_Luc2P_RE42 | GATA3 - Gata3 gene reporter |
| 90381 | pLminP_Luc2P_RE43 | RUNX - Runx1 gene reporter |
| 90382 | pLminP_Luc2P_RE44 | Hedgehog - Gli1 gene reporter |
| 90383 | pLminP_Luc2P_RE45 | EGR1 - Early growth response factor gene reporter |
| 90384 | pLminP_Luc2P_RE46 | NFYA - constitutive enhancer gene reporter |
| 90385 | pLminP_Luc2P_RE47 | IFNB1 - Interferon beta gene reporter |
| 90388 | pLminP_Luc2P_RE49 | PPARg/RARa - PPARg gene reporter |
| 90389 | pLminP_Luc2P_RE50 | PPARg/RARa - PPARg gene reporter |
| 90397 | pLminP_Luc2P_RE52 | STAT1 - STAT1 gene reporter |
| 90398 | pLminP_Luc2P_RE53 | STAT1 - STAT1 gene reporter |
| 90399 | pLminP_Luc2P_RE54 | C/EBPa - CEBPA gene reporter |
| 90400 | pLminP_Luc2P_RE55 | C-REL - NFkB gene reporter |
| 90402 | pLminP_Luc2P_RE57 | Type I Interferon - ISGF3G (STAT1, STAT2, IRF9) gene reporter |
| 90404 | pLminP_Luc2P_RE59 | STAT3 - Sis-inducible element (SIE) gene reporter |
| 90405 | pLminP_Luc2P_RE60 | STAT5 - Stat5 gene reporter |