A large peptidome dataset improves HLA class I epitope prediction across most of the human population.
Sarkizova S, Klaeger S, Le PM, Li LW, Oliveira G, Keshishian H, Hartigan CR, Zhang W, Braun DA, Ligon KL, Bachireddy P, Zervantonakis IK, Rosenbluth JM, Ouspenskaia T, Law T, Justesen S, Stevens J, Lane WJ, Eisenhaure T, Lan Zhang G, Clauser KR, Hacohen N, Carr SA, Wu CJ, Keskin DB
Nat Biotechnol. 2020 Feb;38(2):199-209. doi: 10.1038/s41587-019-0322-9. Epub 2019 Dec 16. PubMed Article
Sarkizova S, Klaeger S, Le PM, Li LW, Oliveira G, Keshishian H, Hartigan CR, Zhang W, Braun DA, Ligon KL, Bachireddy P, Zervantonakis IK, Rosenbluth JM, Ouspenskaia T, Law T, Justesen S, Stevens J, Lane WJ, Eisenhaure T, Lan Zhang G, Clauser KR, Hacohen N, Carr SA, Wu CJ, Keskin DB
Nat Biotechnol. 2020 Feb;38(2):199-209. doi: 10.1038/s41587-019-0322-9. Epub 2019 Dec 16. PubMed Article
Plasmids from Article
| ID | Plasmid | Purpose |
|---|---|---|
| 203230 | B*56:01:01:01 | Overexpress HLA allele |
| 203231 | B*37:01:01 | Overexpress HLA allele |
| 203232 | B*35:07 | Overexpress HLA allele |
| 203233 | B*13:02:01 | Overexpress HLA allele |
| 203234 | B*50:01:01 | Overexpress HLA allele |
| 203235 | B*14:02:01:01 | Overexpress HLA allele |
| 203236 | B*42:01:01 | Overexpress HLA allele |
| 203237 | B*15:03:01:01 | Overexpress HLA allele |
| 203238 | B*15:01:01:01 | Overexpress HLA allele |
| 203239 | B*40:02:01 | Overexpress HLA allele |
| 203240 | B*55:02:01 | Overexpress HLA allele |
| 203241 | B*40:06:01:01 | Overexpress HLA allele |
| 203242 | B*15:02:01 | Overexpress HLA allele |
| 203243 | B*13:01:01 | Overexpress HLA allele |
| 203244 | B*07:04 | Overexpress HLA allele |
| 203245 | B*52:01:01:01 | Overexpress HLA allele |
| 203246 | B*38:01:01 | Overexpress HLA allele |
| 203247 | B*55:01:01 | Overexpress HLA allele |
| 203248 | B*49:01:01 | Overexpress HLA allele |
| 203249 | B*53:01:01 | Overexpress HLA allele |
| 203250 | B*46:01:01 | Overexpress HLA allele |
| 203251 | B*08:01:01 | Overexpress HLA allele |
| 203254 | B*15:10:01 | Overexpress HLA allele |
| 203255 | B*35:03:01 | Overexpress HLA allele |
| 203256 | B*38:02:01 | Overexpress HLA allele |
| 203257 | B*40:01:01 | Overexpress HLA allele |
| 203258 | B*42:01:01 | Overexpress HLA allele |
| 203259 | B*45:01:01 | Overexpress HLA allele |
| 203260 | B*57:03:01 | Overexpress HLA allele |
| 203261 | B*58:01:01 | Overexpress HLA allele |
| 203262 | B*58:02:01 | Overexpress HLA allele |
| 203263 | B*15:17:01 | Overexpress HLA allele |
| 203264 | B*27:12:01 | Overexpress HLA allele |
| 203265 | B*35:02:01 | Overexpress HLA allele |
| 203266 | B*41:02:01 | Overexpress HLA allele |
| 203267 | B*47:01:01 | Overexpress HLA allele |
| 203268 | B*07:05:01 | Overexpress HLA allele |
| 203269 | B*27:02:01 | Overexpress HLA allele |
| 203270 | A*74:01:01 | Overexpress HLA allele |
| 203271 | A*34:01:01 | Overexpress HLA allele |
| 203275 | A*33:03:01 | Overexpress HLA allele |
| 203276 | A*11:01:01:01 | Overexpress HLA allele |
| 203277 | A*02:02:01:01 | Overexpress HLA allele |
| 203278 | A*02:05:01 | Overexpress HLA allele |
| 203279 | A*02:06:01 | Overexpress HLA allele |
| 203280 | A*02:11:01 | Overexpress HLA allele |
| 203281 | A*11:01:01 | Overexpress HLA allele |
| 203282 | A*11:02:01 | Overexpress HLA allele |
| 203283 | A*24:07:01 | Overexpress HLA allele |
| 203284 | A*25:01:01 | Overexpress HLA allele |
| 203285 | A*26:01:01 | Overexpress HLA allele |
| 203286 | A*29:01:01 | Overexpress HLA allele |
| 203287 | A*32:01:01 | Overexpress HLA allele |
| 203288 | A*33:01:01 | Overexpress HLA allele |
| 203289 | A*34:02:01 | Overexpress HLA allele |
| 203290 | A*36:01:01 | Overexpress HLA allele |
| 203291 | A*66:01:01 | Overexpress HLA allele |
| 203292 | A*68:01:01 | Overexpress HLA allele |
| 203293 | A*01:03:01 | Overexpress HLA allele |
| 203294 | A*03:02:01 | Overexpress HLA allele |
| 203295 | A*24:02:01 | Overexpress HLA allele |
| 203296 | A*24:03:01 | Overexpress HLA allele |