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pU6-BbsI-chiRNA Citations (75)

Plasmid Article: Genome engineering of Drosophila with the CRISPR RNA-guided Cas9 nuclease.
Gratz SJ, Cummings AM, Nguyen JN, Hamm DC, Donohue LK, Harrison MM, Wildonger J, O'Connor-Giles KM Genetics. 2013 May 24.
PubMed Journal

Articles Citing pU6-BbsI-chiRNA

Articles
CRISPR/Cas9 and genome editing in Drosophila. Bassett AR, Liu JL. J Genet Genomics. 2014 Jan 20;41(1):7-19. doi: 10.1016/j.jgg.2013.12.004. Epub 2013 Dec 18. PubMed
Easy quantitative assessment of genome editing by sequence trace decomposition. Brinkman EK, Chen T, Amendola M, van Steensel B. Nucleic Acids Res. 2014 Dec 16;42(22):e168. doi: 10.1093/nar/gku936. Epub 2014 Oct 9. PubMed
Improved genome editing in human cell lines using the CRISPR method. Munoz IM, Szyniarowski P, Toth R, Rouse J, Lachaud C. PLoS One. 2014 Oct 10;9(10):e109752. doi: 10.1371/journal.pone.0109752. eCollection 2014. PubMed
Cas9-based genome editing in Drosophila. Housden BE, Lin S, Perrimon N. Methods Enzymol. 2014;546:415-39. doi: 10.1016/B978-0-12-801185-0.00019-2. PubMed
Heritable CRISPR/Cas9-mediated genome editing in the yellow fever mosquito, Aedes aegypti. Dong S, Lin J, Held NL, Clem RJ, Passarelli AL, Franz AW. PLoS One. 2015 Mar 27;10(3):e0122353. doi: 10.1371/journal.pone.0122353. eCollection 2015. PubMed
Precise Genome Editing of Drosophila with CRISPR RNA-Guided Cas9. Gratz SJ, Harrison MM, Wildonger J, O'Connor-Giles KM. Methods Mol Biol. 2015;1311:335-48. doi: 10.1007/978-1-4939-2687-9_22. PubMed
UPRT, a suicide-gene therapy candidate in higher eukaryotes, is required for Drosophila larval growth and normal adult lifespan. Ghosh AC, Shimell M, Leof ER, Haley MJ, O'Connor MB. Sci Rep. 2015 Aug 14;5:13176. doi: 10.1038/srep13176. PubMed
CRISPR/Cas9-mediated knockout of factors in non-homologous end joining pathway enhances gene targeting in silkworm cells. Zhu L, Mon H, Xu J, Lee JM, Kusakabe T. Sci Rep. 2015 Dec 10;5:18103. doi: 10.1038/srep18103. PubMed
Rab8 directs furrow ingression and membrane addition during epithelial formation in Drosophila melanogaster. Mavor LM, Miao H, Zuo Z, Holly RM, Xie Y, Loerke D, Blankenship JT. Development. 2016 Mar 1;143(5):892-903. doi: 10.1242/dev.128876. Epub 2016 Feb 2. PubMed
Synaptic roles for phosphomannomutase type 2 in a new Drosophila congenital disorder of glycosylation disease model. Parkinson WM, Dookwah M, Dear ML, Gatto CL, Aoki K, Tiemeyer M, Broadie K. Dis Model Mech. 2016 May 1;9(5):513-27. doi: 10.1242/dmm.022939. Epub 2016 Mar 3. PubMed
PINK1 is required for timely cell-type specific mitochondrial clearance during Drosophila midgut metamorphosis. Liu Y, Lin J, Zhang M, Chen K, Yang S, Wang Q, Yang H, Xie S, Zhou Y, Zhang X, Chen F, Yang Y. Dev Biol. 2016 Nov 15;419(2):357-372. doi: 10.1016/j.ydbio.2016.08.028. Epub 2016 Aug 26. PubMed
Organization and function of Drosophila odorant binding proteins. Larter NK, Sun JS, Carlson JR. Elife. 2016 Nov 15;5. pii: e20242. doi: 10.7554/eLife.20242. PubMed
Drosophila Sulf1 is required for the termination of intestinal stem cell division during regeneration. Takemura M, Nakato H. J Cell Sci. 2017 Jan 15;130(2):332-343. doi: 10.1242/jcs.195305. Epub 2016 Nov 25. PubMed
The essential Drosophila CLAMP protein differentially regulates non-coding roX RNAs in male and females. Urban JA, Doherty CA, Jordan WT 3rd, Bliss JE, Feng J, Soruco MM, Rieder LE, Tsiarli MA, Larschan EN. Chromosome Res. 2016 Dec 19. PubMed
Immediate perception of a reward is distinct from the reward's long-term salience. McGinnis JP, Jiang H, Agha MA, Sanchez CP, Lange J, Yu Z, Marion-Poll F, Si K. Elife. 2016 Dec 22;5. pii: e22283. doi: 10.7554/eLife.22283. PubMed
upSET, the Drosophila Homologue of SET3, Is Required for Viability and the Proper Balance of Active and Repressive Chromatin Marks. McElroy KA, Jung YL, Zee BM, Wang CI, Park PJ, Kuroda MI. G3 (Bethesda). 2017 Jan 6. pii: g3.116.037788. doi: 10.1534/g3.116.037788. PubMed
Drosophila larvae synthesize the putative oncometabolite L-2-hydroxyglutarate during normal developmental growth. Li H, Chawla G, Hurlburt AJ, Sterrett MC, Zaslaver O, Cox J, Karty JA, Rosebrock AP, Caudy AA, Tennessen JM. Proc Natl Acad Sci U S A. 2017 Feb 7;114(6):1353-1358. doi: 10.1073/pnas.1614102114. Epub 2017 Jan 23. PubMed
Transgenic line for the identification of cholinergic release sites in Drosophila melanogaster. Pankova K, Borst A. J Exp Biol. 2017 Apr 15;220(Pt 8):1405-1410. doi: 10.1242/jeb.149369. Epub 2017 Feb 6. PubMed
Combining the auxin-inducible degradation system with CRISPR/Cas9-based genome editing for the conditional depletion of endogenous Drosophila melanogaster proteins. Bence M, Jankovics F, Lukacsovich T, Erdelyi M. FEBS J. 2017 Apr;284(7):1056-1069. doi: 10.1111/febs.14042. Epub 2017 Mar 8. PubMed
The taste response to ammonia in Drosophila. Delventhal R, Menuz K, Joseph R, Park J, Sun JS, Carlson JR. Sci Rep. 2017 Mar 6;7:43754. doi: 10.1038/srep43754. PubMed
A receptor and neuron that activate a circuit limiting sucrose consumption. Joseph RM, Sun JS, Tam E, Carlson JR. Elife. 2017 Mar 23;6. pii: e24992. doi: 10.7554/eLife.24992. PubMed
Self-organized Notch dynamics generate stereotyped sensory organ patterns in Drosophila. Corson F, Couturier L, Rouault H, Mazouni K, Schweisguth F. Science. 2017 May 5;356(6337). pii: eaai7407. doi: 10.1126/science.aai7407. Epub 2017 Apr 6. PubMed
Neuralized regulates Crumbs endocytosis and epithelium morphogenesis via specific Stardust isoforms. Perez-Mockus G, Roca V, Mazouni K, Schweisguth F. J Cell Biol. 2017 May 1;216(5):1405-1420. doi: 10.1083/jcb.201611196. Epub 2017 Apr 10. PubMed
Use of the CRISPR-Cas9 system for genome editing in cultured Drosophila ovarian somatic cells. Ishizu H, Sumiyoshi T, Siomi MC. Methods. 2017 May 25. pii: S1046-2023(16)30326-7. doi: 10.1016/j.ymeth.2017.05.021. PubMed
Secreted tissue inhibitor of matrix metalloproteinase restricts trans-synaptic signaling to coordinate synaptogenesis. Shilts J, Broadie K. J Cell Sci. 2017 Jul 15;130(14):2344-2358. doi: 10.1242/jcs.200808. Epub 2017 Jun 2. PubMed
Naturally Segregating Variation at Ugt86Dd Contributes to Nicotine Resistance in Drosophila melanogaster. Highfill CA, Tran JH, Nguyen SKT, Moldenhauer TR, Wang X, Macdonald SJ. Genetics. 2017 Sep;207(1):311-325. doi: 10.1534/genetics.117.300058. Epub 2017 Jul 25. PubMed
Extended Synaptotagmin Localizes to Presynaptic ER and Promotes Neurotransmission and Synaptic Growth in Drosophila. Kikuma K, Li X, Kim D, Sutter D, Dickman DK. Genetics. 2017 Nov;207(3):993-1006. doi: 10.1534/genetics.117.300261. Epub 2017 Sep 7. PubMed
Planar polarized Rab35 functions as an oscillatory ratchet during cell intercalation in the Drosophila epithelium. Jewett CE, Vanderleest TE, Miao H, Xie Y, Madhu R, Loerke D, Blankenship JT. Nat Commun. 2017 Sep 7;8(1):476. doi: 10.1038/s41467-017-00553-0. PubMed
Regulation of cortical stability by RhoGEF3 in mitotic Sensory Organ Precursor cells in Drosophila. Couturier L, Mazouni K, Bernard F, Besson C, Reynaud E, Schweisguth F. Biol Open. 2017 Dec 15;6(12):1851-1860. doi: 10.1242/bio.026641. PubMed
Classifying Drosophila Olfactory Projection Neuron Subtypes by Single-Cell RNA Sequencing. Li H, Horns F, Wu B, Xie Q, Li J, Li T, Luginbuhl DJ, Quake SR, Luo L. Cell. 2017 Nov 16;171(5):1206-1220.e22. doi: 10.1016/j.cell.2017.10.019. PubMed
CRISPR/Cas9 and active genetics-based trans-species replacement of the endogenous Drosophila kni-L2 CRM reveals unexpected complexity. Xu XS, Gantz VM, Siomava N, Bier E. Elife. 2017 Dec 23;6. pii: 30281. doi: 10.7554/eLife.30281. PubMed
Drosophila Gr64e mediates fatty acid sensing via the phospholipase C pathway. Kim H, Kim H, Kwon JY, Seo JT, Shin DM, Moon SJ. PLoS Genet. 2018 Feb 8;14(2):e1007229. doi: 10.1371/journal.pgen.1007229. eCollection 2018 Feb. PubMed
Cooperative recruitment of Yan via a high-affinity ETS supersite organizes repression to confer specificity and robustness to cardiac cell fate specification. Boisclair Lachance JF, Webber JL, Hong L, Dinner AR, Rebay I. Genes Dev. 2018 Mar 1;32(5-6):389-401. doi: 10.1101/gad.307132.117. Epub 2018 Mar 13. PubMed
Genome-wide analysis of gene regulation mechanisms during Drosophila spermatogenesis. Laktionov PP, Maksimov DA, Romanov SE, Antoshina PA, Posukh OV, White-Cooper H, Koryakov DE, Belyakin SN. Epigenetics Chromatin. 2018 Apr 2;11(1):14. doi: 10.1186/s13072-018-0183-3. PubMed
Short-Form Bomanins Mediate Humoral Immunity in Drosophila. Lindsay SA, Lin SJH, Wasserman SA. J Innate Immun. 2018;10(4):306-314. doi: 10.1159/000489831. Epub 2018 Jun 19. PubMed
Time-resolved transcriptomics in neural stem cells identifies a v-ATPase/Notch regulatory loop. Wissel S, Harzer H, Bonnay F, Burkard TR, Neumuller RA, Knoblich JA. J Cell Biol. 2018 Sep 3;217(9):3285-3300. doi: 10.1083/jcb.201711167. Epub 2018 Jun 29. PubMed
Direct control of somatic stem cell proliferation factors by the Drosophila testis stem cell niche. Albert EA, Puretskaia OA, Terekhanova NV, Labudina A, Bokel C. Development. 2018 Sep 3;145(17). pii: dev.156315. doi: 10.1242/dev.156315. PubMed
Phenotypic characterization of SETD3 knockout Drosophila. Tiebe M, Lutz M, Levy D, Teleman AA. PLoS One. 2018 Aug 1;13(8):e0201609. doi: 10.1371/journal.pone.0201609. eCollection 2018. PubMed
The VAChTY49N mutation provides insecticide-resistance but perturbs evoked cholinergic neurotransmission in Drosophila. Vernon SW, Goodchild J, Baines RA. PLoS One. 2018 Sep 11;13(9):e0203852. doi: 10.1371/journal.pone.0203852. eCollection 2018. PubMed
Humidity response depends on the small soluble protein Obp59a in Drosophila. Sun JS, Larter NK, Chahda JS, Rioux D, Gumaste A, Carlson JR. Elife. 2018 Sep 19;7. pii: 39249. doi: 10.7554/eLife.39249. PubMed
The auxin-inducible degradation system enables conditional PERIOD protein depletion in the nervous system of Drosophila melanogaster. Chen W, Werdann M, Zhang Y. FEBS J. 2018 Dec;285(23):4378-4393. doi: 10.1111/febs.14677. Epub 2018 Oct 25. PubMed
Timely double-strand break repair and pathway choice in pericentromeric heterochromatin depend on the histone demethylase dKDM4A. Janssen A, Colmenares SU, Lee T, Karpen GH. Genes Dev. 2019 Jan 1;33(1-2):103-115. doi: 10.1101/gad.317537.118. Epub 2018 Dec 21. PubMed
Narya, a RING finger domain-containing protein, is required for meiotic DNA double-strand break formation and crossover maturation in Drosophila melanogaster. Lake CM, Nielsen RJ, Bonner AM, Eche S, White-Brown S, McKim KS, Hawley RS. PLoS Genet. 2019 Jan 7;15(1):e1007886. doi: 10.1371/journal.pgen.1007886. eCollection 2019 Jan. PubMed
Dynamics of Free and Chromatin-Bound Histone H3 during Early Embryogenesis. Shindo Y, Amodeo AA. Curr Biol. 2019 Jan 21;29(2):359-366.e4. doi: 10.1016/j.cub.2018.12.020. Epub 2019 Jan 10. PubMed
Genetic analysis of the RNA polymerase II CTD in Drosophila. Lu F, Gilmour DS. Methods. 2019 Apr 15;159-160:129-137. doi: 10.1016/j.ymeth.2019.01.010. Epub 2019 Jan 24. PubMed
Differential regulation of the Drosophila sleep homeostat by circadian and arousal inputs. Ni JD, Gurav AS, Liu W, Ogunmowo TH, Hackbart H, Elsheikh A, Verdegaal AA, Montell C. Elife. 2019 Feb 5;8. pii: 40487. doi: 10.7554/eLife.40487. PubMed
The C-Terminal Domain of RNA Polymerase II Is a Multivalent Targeting Sequence that Supports Drosophila Development with Only Consensus Heptads. Lu F, Portz B, Gilmour DS. Mol Cell. 2019 Mar 21;73(6):1232-1242.e4. doi: 10.1016/j.molcel.2019.01.008. Epub 2019 Feb 11. PubMed
Decoding the 5' nucleotide bias of PIWI-interacting RNAs. Stein CB, Genzor P, Mitra S, Elchert AR, Ipsaro JJ, Benner L, Sobti S, Su Y, Hammell M, Joshua-Tor L, Haase AD. Nat Commun. 2019 Feb 19;10(1):828. doi: 10.1038/s41467-019-08803-z. PubMed
A Poly-Glutamine Region in the Drosophila VAChT Dictates Fill-Level of Cholinergic Synaptic Vesicles. Vernon SW, Goodchild J, Baines RA. eNeuro. 2019 Mar 4;6(1). pii: eN-NWR-0477-18. doi: 10.1523/ENEURO.0477-18.2019. eCollection 2019 Jan-Feb. PubMed
Loss of Prune in Circadian Cells Decreases the Amplitude of the Circadian Locomotor Rhythm in Drosophila. Chen W, Xue Y, Scarfe L, Wang D, Zhang Y. Front Cell Neurosci. 2019 Mar 1;13:76. doi: 10.3389/fncel.2019.00076. eCollection 2019. PubMed
A toolset to study functions of Cytosolic non-specific dipeptidase 2 (CNDP2) using Drosophila as a model organism. Andreyeva EN, Ogienko AA, Dubatolova TD, Oshchepkova AL, Kozhevnikova EN, Ivankin AV, Pavlova GA, Kopyl SA, Pindyurin AV. BMC Genet. 2019 Mar 18;20(Suppl 1):31. doi: 10.1186/s12863-019-0726-z. PubMed
Cul3 and insomniac are required for rapid ubiquitination of postsynaptic targets and retrograde homeostatic signaling. Kikuma K, Li X, Perry S, Li Q, Goel P, Chen C, Kim D, Stavropoulos N, Dickman D. Nat Commun. 2019 Jul 5;10(1):2998. doi: 10.1038/s41467-019-10992-6. PubMed
Multilevel regulation of the glass locus during Drosophila eye development. Fritsch C, Bernardo-Garcia FJ, Humberg TH, Mishra AK, Miellet S, Almeida S, Frochaux MV, Deplancke B, Huber A, Sprecher SG. PLoS Genet. 2019 Jul 12;15(7):e1008269. doi: 10.1371/journal.pgen.1008269. eCollection 2019 Jul. PubMed
The transcription factor odd-paired regulates temporal identity in transit-amplifying neural progenitors via an incoherent feed-forward loop. Abdusselamoglu MD, Eroglu E, Burkard TR, Knoblich JA. Elife. 2019 Jul 22;8. pii: 46566. doi: 10.7554/eLife.46566. PubMed
Regulation of Notch output dynamics via specific E(spl)-HLH factors during bristle patterning in Drosophila. Couturier L, Mazouni K, Corson F, Schweisguth F. Nat Commun. 2019 Aug 2;10(1):3486. doi: 10.1038/s41467-019-11477-2. PubMed
Neuropeptide F regulates courtship in Drosophila through a male-specific neuronal circuit. Liu W, Ganguly A, Huang J, Wang Y, Ni JD, Gurav AS, Aguilar MA, Montell C. Elife. 2019 Aug 12;8. pii: 49574. doi: 10.7554/eLife.49574. PubMed
Diversification of Retinoblastoma Protein Function Associated with Cis and Trans Adaptations. Mouawad R, Prasad J, Thorley D, Himadewi P, Kadiyala D, Wilson N, Kapranov P, Arnosti DN. Mol Biol Evol. 2019 Dec 1;36(12):2790-2804. doi: 10.1093/molbev/msz187. PubMed
Altering the Temporal Regulation of One Transcription Factor Drives Evolutionary Trade-Offs between Head Sensory Organs. Ramaekers A, Claeys A, Kapun M, Mouchel-Vielh E, Potier D, Weinberger S, Grillenzoni N, Dardalhon-Cumenal D, Yan J, Wolf R, Flatt T, Buchner E, Hassan BA. Dev Cell. 2019 Sep 23;50(6):780-792.e7. doi: 10.1016/j.devcel.2019.07.027. Epub 2019 Aug 22. PubMed
X chromosome and autosomal recombination are differentially sensitive to disruptions in SC maintenance. Billmyre KK, Cahoon CK, Heenan GM, Wesley ER, Yu Z, Unruh JR, Takeo S, Hawley RS. Proc Natl Acad Sci U S A. 2019 Oct 22;116(43):21641-21650. doi: 10.1073/pnas.1910840116. Epub 2019 Sep 30. PubMed
Nuclear Pores Assemble from Nucleoporin Condensates During Oogenesis. Hampoelz B, Schwarz A, Ronchi P, Bragulat-Teixidor H, Tischer C, Gaspar I, Ephrussi A, Schwab Y, Beck M. Cell. 2019 Oct 17;179(3):671-686.e17. doi: 10.1016/j.cell.2019.09.022. PubMed
Improvement and use of CRISPR/Cas9 to engineer a sperm-marking strain for the invasive fruit pest Drosophila suzukii. Ahmed HMM, Hildebrand L, Wimmer EA. BMC Biotechnol. 2019 Dec 5;19(1):85. doi: 10.1186/s12896-019-0588-5. PubMed
Structural and Functional Dissection of the 5' Region of the Notch Gene in Drosophila melanogaster. Volkova EI, Andreyenkova NG, Andreyenkov OV, Sidorenko DS, Zhimulev IF, Demakov SA. Genes (Basel). 2019 Dec 12;10(12). pii: genes10121037. doi: 10.3390/genes10121037. PubMed
Bombardier Enables Delivery of Short-Form Bomanins in the Drosophila Toll Response. Lin SJH, Fulzele A, Cohen LB, Bennett EJ, Wasserman SA. Front Immunol. 2020 Jan 10;10:3040. doi: 10.3389/fimmu.2019.03040. eCollection 2019. PubMed
Drosophila Xrcc2 regulates DNA double-strand repair in somatic cells. Bayer FE, Deichsel S, Mahl P, Nagel AC. DNA Repair (Amst). 2020 Apr;88:102807. doi: 10.1016/j.dnarep.2020.102807. Epub 2020 Jan 23. PubMed
The Daisho Peptides Mediate Drosophila Defense Against a Subset of Filamentous Fungi. Cohen LB, Lindsay SA, Xu Y, Lin SJH, Wasserman SA. Front Immunol. 2020 Jan 23;11:9. doi: 10.3389/fimmu.2020.00009. eCollection 2020. PubMed
An early endosome-derived retrograde trafficking pathway promotes secretory granule maturation. Ma CJ, Yang Y, Kim T, Chen CH, Polevoy G, Vissa M, Burgess J, Brill JA. J Cell Biol. 2020 Mar 2;219(3). pii: 133712. doi: 10.1083/jcb.201808017. PubMed
Chondroitin sulfate proteoglycan Windpipe modulates Hedgehog signaling in Drosophila. Takemura M, Noborn F, Nilsson J, Bowden N, Nakato E, Baker S, Su TY, Larson G, Nakato H. Mol Biol Cell. 2020 Apr 1;31(8):813-824. doi: 10.1091/mbc.E19-06-0327. Epub 2020 Feb 12. PubMed
Antagonistic regulation by insulin-like peptide and activin ensures the elaboration of appropriate dendritic field sizes of amacrine neurons. Luo J, Ting CY, Li Y, McQueen P, Lin TY, Hsu CP, Lee CH. Elife. 2020 Mar 16;9. pii: 50568. doi: 10.7554/eLife.50568. PubMed
A naturally-occurring 22-bp coding deletion in Ugt86Dd reduces nicotine resistance in Drosophila melanogaster. Macdonald SJ, Highfill CA. BMC Res Notes. 2020 Mar 30;13(1):188. doi: 10.1186/s13104-020-05035-z. PubMed
Contributions of the Conserved Insect Carbon Dioxide Receptor Subunits to Odor Detection. Kumar A, Tauxe GM, Perry S, Scott CA, Dahanukar A, Ray A. Cell Rep. 2020 Apr 14;31(2):107510. doi: 10.1016/j.celrep.2020.03.074. PubMed
Intimate functional interactions between TGS1 and the Smn complex revealed by an analysis of the Drosophila eye development. Maccallini P, Bavasso F, Scatolini L, Bucciarelli E, Noviello G, Lisi V, Palumbo V, D'Angeli S, Cacchione S, Cenci G, Ciapponi L, Wakefield JG, Gatti M, Raffa GD. PLoS Genet. 2020 May 26;16(5):e1008815. doi: 10.1371/journal.pgen.1008815. eCollection 2020 May. PubMed
Using RNA Tags for Multicolor Live Imaging of Chromatin Loci and Transcription in Drosophila Embryos. Chen H, Gregor T. Methods Mol Biol. 2020;2166:373-384. doi: 10.1007/978-1-0716-0712-1_22. PubMed
A context-dependent bifurcation in the Pointed transcriptional effector network contributes specificity and robustness to retinal cell fate acquisition. Wu C, Boisclair Lachance JF, Ludwig MZ, Rebay I. PLoS Genet. 2020 Nov 30;16(11):e1009216. doi: 10.1371/journal.pgen.1009216. eCollection 2020 Nov. PubMed
Efficient multiplexed genome engineering with a polycistronic tRNA and CRISPR guide-RNA reveals an important role of detonator in reproduction of Drosophila melanogaster. Chon C, Chon G, Matsui Y, Zeng H, Lai ZC, Liu A. PLoS One. 2021 Jan 14;16(1):e0245454. doi: 10.1371/journal.pone.0245454. eCollection 2021. PubMed
Functional Diversification, Redundancy, and Epistasis among Paralogs of the Drosophila melanogaster Obp50a-d Gene Cluster. Johnstun JA, Shankar V, Mokashi SS, Sunkara LT, Ihearahu UE, Lyman RL, Mackay TFC, Anholt RRH. Mol Biol Evol. 2021 May 4;38(5):2030-2044. doi: 10.1093/molbev/msab004. PubMed

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