Accelerating protein design by scaling experimental characterization.
Qian J, Milles LF, Wicky BIM, Ragotte RJ, Motmaen A, Borst AJ, Skotheim R, Ols S, Coventry B, Li X, Kibler RD, Goreshnik I, Exposit M, Lore K, Stewart L, Baker D
Nat Commun. 2026 Aug 20;17(1):9945. doi: 10.1038/s41467-026-76740-9.
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PubMed
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Article
A subset of these plasmids is included in the DMX Barcoding Kit.
Plasmids from Article
| ID | Plasmid | Purpose |
|---|---|---|
| 232210 | cwby0001 | GGA cloning M-AGGA-promoter-ccdb-TTCC-SNAC-HIS |
| 232211 | cwby0002 | GGA cloning MSG-AGGA-promoter-ccdb-TTCC-HIS |
| 232212 | cwby0003 | GGA cloning sfGFP-AGGA-ccdb-TTCC-HIS |
| 232213 | cwby0004 | GGA cloning cwby template vector pet29-ATG-PaQCI-TAAT_GA |
| 232214 | cwby0005 | GGA cloning MS-his-AGGA-promoter-ccdb-TTCC |
| 232215 | cwby0006 | GGA cloning TATG-promotor-ccdb-TAAT |
| 232216 | cwby0007 | GGA cloning M-AGGA-promoter-ccdb-TTCC-Avitag-HIS |
| 232217 | cwby0008 | GGA cloning M-AGGA-promoter-ccdb-TTCC-HIS-SpyTag003 |
| 232218 | cwby0009 | GGA cloning his-mScarletI-AGGA-promoter-ccdb-TTCC-his |
| 232219 | cwby0010 | GGA cloning his-TagGFP2-AGGA-promoter-ccdb-TTCC |
| 232220 | cwby0011 | GGA cloning his-mTagBFP2-AGGA-promoter-ccdb-TTCC |
| 232221 | cwby0012 | GGA cloning his-mscarletI3-AGGA-promoter-ccdb-TTCC |
| 232222 | cwby0013 | GGA cloning his-muGFP-AGGA-promoter-ccdb-TTCC |
| 232223 | cwby0014 | GGA cloning his-mBaoJin-AGGA-promoter-ccdb-TTCC |
| 232224 | cwby0015 | GGA cloning his-mhfYFP-AGGA-promoter-ccdb-TTCC |
| 247376 | cwby0026 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC1_004-SNAC-6xhis |
| 247377 | cwby0027 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC1_008-SNAC-6xhis |
| 247378 | cwby0028 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC2_059-SNAC-6xhis |
| 247379 | cwby0029 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC2_062-SNAC-6xhis |
| 247380 | cwby0030 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC2_063-SNAC-6xhis |
| 247381 | cwby0031 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC2_064-SNAC-6xhis |
| 247382 | cwby0032 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC2_065-SNAC-6xhis |
| 247383 | cwby0033 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC2_067-SNAC-6xhis |
| 247384 | cwby0034 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC2_068-SNAC-6xhis |
| 247385 | cwby0035 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC3_104-SNAC-6xhis |
| 247386 | cwby0036 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC3_109-SNAC-6xhis |
| 247387 | cwby0037 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC3_110-SNAC-6xhis |
| 247388 | cwby0038 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC3_114-SNAC-6xhis |
| 247389 | cwby0039 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC3_118-SNAC-6xhis |
| 247390 | cwby0040 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC3_919-SNAC-6xhis |
| 247391 | cwby0041 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-SB175-SNAC-6xhis |
| 247392 | cwby0042 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC4_135-SNAC-6xhis |
| 247393 | cwby0043 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC4_136-SNAC-6xhis |
| 247394 | cwby0044 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC4_140-SNAC-6xhis |
| 247395 | cwby0045 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC5_169-SNAC-6xhis |
| 247396 | cwby0046 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC5_176-SNAC-6xhis |
| 247397 | cwby0047 | GGA cloning AGGA-HALC1_004-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247398 | cwby0048 | GGA cloning AGGA-HALC1_008-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247399 | cwby0049 | GGA cloning AGGA-HALC2_059-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247400 | cwby0050 | GGA cloning AGGA-HALC2_062-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247401 | cwby0051 | GGA cloning AGGA-HALC2_063-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247402 | cwby0052 | GGA cloning AGGA-HALC2_064-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247403 | cwby0053 | GGA cloning AGGA-HALC2_065-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247404 | cwby0054 | GGA cloning AGGA-HALC2_067-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247405 | cwby0055 | GGA cloning AGGA-HALC2_068-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247406 | cwby0056 | GGA cloning AGGA-HALC3_104-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247407 | cwby0057 | GGA cloning AGGA-HALC3_109-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247408 | cwby0058 | GGA cloning AGGA-HALC3_110-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247409 | cwby0059 | GGA cloning AGGA-HALC3_114-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247410 | cwby0060 | GGA cloning AGGA-HALC3_118-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247411 | cwby0061 | GGA cloning AGGA-HALC3_919-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247412 | cwby0062 | GGA cloning AGGA-SB175-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247413 | cwby0063 | GGA cloning AGGA-HALC4_135-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247414 | cwby0064 | GGA cloning AGGA-HALC4_136-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247415 | cwby0065 | GGA cloning AGGA-HALC4_140-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247416 | cwby0066 | GGA cloning AGGA-HALC5_169-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247417 | cwby0067 | GGA cloning AGGA-HALC5_176-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247419 | cwby0069 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-C4-71-8-SNAC-6xhis |
| 247420 | cwby0070 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-C4-81-4-SNAC-6xhis |
| 247421 | cwby0071 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-C6-71-9-1-SNAC-6xhis |
| 247422 | cwby0072 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-C6-79-10-SNAC-6xhis |
| 247423 | cwby0073 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-C8-71-7-1-SNAC-6xhis |
| 247424 | cwby0075 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-H8-SNAC-6xhis |
| 247425 | cwby0074 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-H6-SNAC-6xhis |
| 247426 | cwby0076 | GGA cloning AGGA-C2-02802-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247427 | cwby0077 | GGA cloning AGGA-C4-71-8-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247428 | cwby0078 | GGA cloning AGGA-C4-81-4-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247429 | cwby0079 | GGA cloning AGGA-C6-71-9-1-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247430 | cwby0080 | GGA cloning AGGA-C6-79-10-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247431 | cwby0081 | GGA cloning AGGA-C8-71-7-1-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247432 | cwby0082 | GGA cloning AGGA-H6-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247433 | cwby0083 | GGA cloning AGGA-H8-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247434 | DMX0001 | Demultiplexing M-BsaI_AGGA_BsmBI-promoter-ccdb-BsmBI_TTCC_BsaI_his-W__AMPR |
| 247435 | DMX0002 | Demultiplexing M-BsaI_AGGA_BsmBI-promoter-ccdb-BsmBI_TTCC_BsaI_W-his__AMPR |
| 255161 | DMX_1_1 | DMX barcode position 1 |
| 255162 | DMX_1_2 | DMX barcode position 1 |
| 255163 | DMX_1_3 | DMX barcode position 1 |
| 255164 | DMX_1_4 | DMX barcode position 1 |
| 255165 | DMX_1_5 | DMX barcode position 1 |
| 255166 | DMX_1_6 | DMX barcode position 1 |
| 255167 | DMX_1_7 | DMX barcode position 1 |
| 255168 | DMX_1_8 | DMX barcode position 1 |
| 255169 | DMX_1_9 | DMX barcode position 1 |
| 255170 | DMX_1_10 | DMX barcode position 1 |
| 255171 | DMX_1_11 | DMX barcode position 1 |
| 255172 | DMX_1_12 | DMX barcode position 1 |
| 255173 | DMX_1_13 | DMX barcode position 1 |
| 255174 | DMX_1_14 | DMX barcode position 1 |
| 255175 | DMX_1_15 | DMX barcode position 1 |
| 255176 | DMX_1_16 | DMX barcode position 1 |
| 255177 | DMX_1_17 | DMX barcode position 1 |
| 255178 | DMX_1_18 | DMX barcode position 1 |
| 255179 | DMX_1_19 | DMX barcode position 1 |
| 255180 | DMX_1_20 | DMX barcode position 1 |
| 255181 | DMX_1_21 | DMX barcode position 1 |
| 255182 | DMX_1_22 | DMX barcode position 1 |
| 255183 | DMX_1_23 | DMX barcode position 1 |
| 255184 | DMX_1_24 | DMX barcode position 1 |
| 255185 | DMX_2_1 | DMX barcode position 2 |
| 255186 | DMX_2_2 | DMX barcode position 2 |
| 255187 | DMX_2_3 | DMX barcode position 2 |
| 255188 | DMX_2_4 | DMX barcode position 2 |
| 255189 | DMX_2_5 | DMX barcode position 2 |
| 255190 | DMX_2_6 | DMX barcode position 2 |
| 255191 | DMX_2_7 | DMX barcode position 2 |
| 255192 | DMX_2_8 | DMX barcode position 2 |
| 255193 | DMX_2_9 | DMX barcode position 2 |
| 255194 | DMX_2_10 | DMX barcode position 2 |
| 255195 | DMX_2_11 | DMX barcode position 2 |
| 255196 | DMX_2_12 | DMX barcode position 2 |
| 255197 | DMX_2_13 | DMX barcode position 2 |
| 255198 | DMX_2_14 | DMX barcode position 2 |
| 255199 | DMX_2_15 | DMX barcode position 2 |
| 255200 | DMX_2_16 | DMX barcode position 2 |
| 255201 | DMX_2_17 | DMX barcode position 2 |
| 255202 | DMX_2_18 | DMX barcode position 2 |
| 255203 | DMX_2_19 | DMX barcode position 2 |
| 255204 | DMX_2_20 | DMX barcode position 2 |
| 255205 | DMX_2_21 | DMX barcode position 2 |
| 255206 | DMX_2_22 | DMX barcode position 2 |
| 255207 | DMX_2_23 | DMX barcode position 2 |
| 255208 | DMX_2_24 | DMX barcode position 2 |
| 255209 | DMX_3_1 | DMX barcode position 3 |
| 255210 | DMX_3_2 | DMX barcode position 3 |
| 255211 | DMX_3_3 | DMX barcode position 3 |
| 255212 | DMX_3_4 | DMX barcode position 3 |
| 255213 | DMX_3_5 | DMX barcode position 3 |
| 255214 | DMX_3_6 | DMX barcode position 3 |
| 255215 | DMX_3_7 | DMX barcode position 3 |
| 255216 | DMX_3_8 | DMX barcode position 3 |
| 255217 | DMX_3_9 | DMX barcode position 3 |
| 255218 | DMX_3_10 | DMX barcode position 3 |
| 255219 | DMX_3_11 | DMX barcode position 3 |
| 255220 | DMX_3_12 | DMX barcode position 3 |
| 255221 | DMX_3_13 | DMX barcode position 3 |
| 255222 | DMX_3_14 | DMX barcode position 3 |
| 255223 | DMX_3_15 | DMX barcode position 3 |
| 255224 | DMX_3_16 | DMX barcode position 3 |
| 255225 | DMX_3_17 | DMX barcode position 3 |
| 255226 | DMX_3_18 | DMX barcode position 3 |
| 255227 | DMX_3_19 | DMX barcode position 3 |
| 255228 | DMX_3_20 | DMX barcode position 3 |
| 255229 | DMX_3_21 | DMX barcode position 3 |
| 255230 | DMX_3_22 | DMX barcode position 3 |
| 255231 | DMX_3_23 | DMX barcode position 3 |
| 255232 | DMX_3_24 | DMX barcode position 3 |
| 255233 | DMX_4_1 | DMX barcode position 4 |
| 255234 | DMX_4_2 | DMX barcode position 4 |
| 255235 | DMX_4_3 | DMX barcode position 4 |
| 255236 | DMX_4_4 | DMX barcode position 4 |
| 255237 | DMX_4_5 | DMX barcode position 4 |
| 255238 | DMX_4_6 | DMX barcode position 4 |
| 255239 | DMX_4_7 | DMX barcode position 4 |
| 255240 | DMX_4_8 | DMX barcode position 4 |
| 255241 | DMX_4_9 | DMX barcode position 4 |
| 255242 | DMX_4_10 | DMX barcode position 4 |
| 255243 | DMX_4_11 | DMX barcode position 4 |
| 255244 | DMX_4_12 | DMX barcode position 4 |
| 255245 | DMX_4_13 | DMX barcode position 4 |
| 255246 | DMX_4_14 | DMX barcode position 4 |
| 255247 | DMX_4_15 | DMX barcode position 4 |
| 255248 | DMX_4_16 | DMX barcode position 4 |
| 255249 | DMX_4_17 | DMX barcode position 4 |
| 255250 | DMX_4_18 | DMX barcode position 4 |
| 255251 | DMX_4_19 | DMX barcode position 4 |
| 255252 | DMX_4_20 | DMX barcode position 4 |
| 255253 | DMX_4_21 | DMX barcode position 4 |
| 255254 | DMX_4_22 | DMX barcode position 4 |
| 255255 | DMX_4_23 | DMX barcode position 4 |
| 255256 | DMX_4_24 | DMX barcode position 4 |