Accelerating protein design by scaling experimental characterization
Qian J, Milles LF, Wicky BIM, Motmaen A, Li X, Kibler RD, Stewart L, Baker D
bioRxiv 2025.08.05.668824; doi: https://doi.org/10.1101/2025.08.05.668824
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Article
Plasmids from Article
| ID | Plasmid | Purpose |
|---|---|---|
| 232210 | cwby0001 | GGA cloning M-AGGA-promoter-ccdb-TTCC-SNAC-HIS |
| 232211 | cwby0002 | GGA cloning MSG-AGGA-promoter-ccdb-TTCC-HIS |
| 232212 | cwby0003 | GGA cloning sfGFP-AGGA-ccdb-TTCC-HIS |
| 232213 | cwby0004 | GGA cloning cwby template vector pet29-ATG-PaQCI-TAAT_GA |
| 232214 | cwby0005 | GGA cloning MS-his-AGGA-promoter-ccdb-TTCC |
| 232215 | cwby0006 | GGA cloning TATG-promotor-ccdb-TAAT |
| 232216 | cwby0007 | GGA cloning M-AGGA-promoter-ccdb-TTCC-Avitag-HIS |
| 232217 | cwby0008 | GGA cloning M-AGGA-promoter-ccdb-TTCC-HIS-SpyTag003 |
| 232218 | cwby0009 | GGA cloning his-mScarletI-AGGA-promoter-ccdb-TTCC-his |
| 232219 | cwby0010 | GGA cloning his-TagGFP2-AGGA-promoter-ccdb-TTCC |
| 232220 | cwby0011 | GGA cloning his-mTagBFP2-AGGA-promoter-ccdb-TTCC |
| 232221 | cwby0012 | GGA cloning his-mscarletI3-AGGA-promoter-ccdb-TTCC |
| 232222 | cwby0013 | GGA cloning his-muGFP-AGGA-promoter-ccdb-TTCC |
| 232223 | cwby0014 | GGA cloning his-mBaoJin-AGGA-promoter-ccdb-TTCC |
| 232224 | cwby0015 | GGA cloning his-mhfYFP-AGGA-promoter-ccdb-TTCC |
| 247376 | cwby0026 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC1_004-SNAC-6xhis |
| 247377 | cwby0027 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC1_008-SNAC-6xhis |
| 247378 | cwby0028 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC2_059-SNAC-6xhis |
| 247379 | cwby0029 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC2_062-SNAC-6xhis |
| 247380 | cwby0030 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC2_063-SNAC-6xhis |
| 247381 | cwby0031 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC2_064-SNAC-6xhis |
| 247382 | cwby0032 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC2_065-SNAC-6xhis |
| 247383 | cwby0033 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC2_067-SNAC-6xhis |
| 247384 | cwby0034 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC2_068-SNAC-6xhis |
| 247385 | cwby0035 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC3_104-SNAC-6xhis |
| 247386 | cwby0036 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC3_109-SNAC-6xhis |
| 247387 | cwby0037 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC3_110-SNAC-6xhis |
| 247388 | cwby0038 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC3_114-SNAC-6xhis |
| 247389 | cwby0039 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC3_118-SNAC-6xhis |
| 247390 | cwby0040 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC3_919-SNAC-6xhis |
| 247391 | cwby0041 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-SB175-SNAC-6xhis |
| 247392 | cwby0042 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC4_135-SNAC-6xhis |
| 247393 | cwby0043 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC4_136-SNAC-6xhis |
| 247394 | cwby0044 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC4_140-SNAC-6xhis |
| 247395 | cwby0045 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC5_169-SNAC-6xhis |
| 247396 | cwby0046 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-HALC5_176-SNAC-6xhis |
| 247397 | cwby0047 | GGA cloning AGGA-HALC1_004-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247398 | cwby0048 | GGA cloning AGGA-HALC1_008-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247399 | cwby0049 | GGA cloning AGGA-HALC2_059-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247400 | cwby0050 | GGA cloning AGGA-HALC2_062-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247401 | cwby0051 | GGA cloning AGGA-HALC2_063-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247402 | cwby0052 | GGA cloning AGGA-HALC2_064-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247403 | cwby0053 | GGA cloning AGGA-HALC2_065-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247404 | cwby0054 | GGA cloning AGGA-HALC2_067-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247405 | cwby0055 | GGA cloning AGGA-HALC2_068-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247406 | cwby0056 | GGA cloning AGGA-HALC3_104-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247407 | cwby0057 | GGA cloning AGGA-HALC3_109-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247408 | cwby0058 | GGA cloning AGGA-HALC3_110-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247409 | cwby0059 | GGA cloning AGGA-HALC3_114-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247410 | cwby0060 | GGA cloning AGGA-HALC3_118-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247411 | cwby0061 | GGA cloning AGGA-HALC3_919-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247412 | cwby0062 | GGA cloning AGGA-SB175-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247413 | cwby0063 | GGA cloning AGGA-HALC4_135-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247414 | cwby0064 | GGA cloning AGGA-HALC4_136-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247415 | cwby0065 | GGA cloning AGGA-HALC4_140-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247416 | cwby0066 | GGA cloning AGGA-HALC5_169-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247417 | cwby0067 | GGA cloning AGGA-HALC5_176-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247419 | cwby0069 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-C4-71-8-SNAC-6xhis |
| 247420 | cwby0070 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-C4-81-4-SNAC-6xhis |
| 247421 | cwby0071 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-C6-71-9-1-SNAC-6xhis |
| 247422 | cwby0072 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-C6-79-10-SNAC-6xhis |
| 247423 | cwby0073 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-C8-71-7-1-SNAC-6xhis |
| 247424 | cwby0075 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-H8-SNAC-6xhis |
| 247425 | cwby0074 | GGA cloning AGGA-promoter-ccdb-TTCC-GS-H6-SNAC-6xhis |
| 247426 | cwby0076 | GGA cloning AGGA-C2-02802-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247427 | cwby0077 | GGA cloning AGGA-C4-71-8-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247428 | cwby0078 | GGA cloning AGGA-C4-81-4-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247429 | cwby0079 | GGA cloning AGGA-C6-71-9-1-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247430 | cwby0080 | GGA cloning AGGA-C6-79-10-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247431 | cwby0081 | GGA cloning AGGA-C8-71-7-1-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247432 | cwby0082 | GGA cloning AGGA-H6-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247433 | cwby0083 | GGA cloning AGGA-H8-GS-promoter-ccdb-TTCC-SNAC-6xhis |
| 247434 | DMX0001 | Demultiplexing M-BsaI_AGGA_BsmBI-promoter-ccdb-BsmBI_TTCC_BsaI_his-W__AMPR |
| 247435 | DMX0002 | Demultiplexing M-BsaI_AGGA_BsmBI-promoter-ccdb-BsmBI_TTCC_BsaI_W-his__AMPR |
| 255161 | DMX_1_1 | DMX barcode position 1 |
| 255163 | DMX_1_3 | DMX barcode position 1 |
| 255164 | DMX_1_4 | DMX barcode position 1 |
| 255165 | DMX_1_5 | DMX barcode position 1 |
| 255167 | DMX_1_7 | DMX barcode position 1 |
| 255168 | DMX_1_8 | DMX barcode position 1 |
| 255169 | DMX_1_9 | DMX barcode position 1 |
| 255170 | DMX_1_10 | DMX barcode position 1 |
| 255171 | DMX_1_11 | DMX barcode position 1 |
| 255172 | DMX_1_12 | DMX barcode position 1 |
| 255173 | DMX_1_13 | DMX barcode position 1 |
| 255174 | DMX_1_14 | DMX barcode position 1 |
| 255175 | DMX_1_15 | DMX barcode position 1 |
| 255176 | DMX_1_16 | DMX barcode position 1 |
| 255177 | DMX_1_17 | DMX barcode position 1 |
| 255178 | DMX_1_18 | DMX barcode position 1 |
| 255179 | DMX_1_19 | DMX barcode position 1 |
| 255180 | DMX_1_20 | DMX barcode position 1 |
| 255181 | DMX_1_21 | DMX barcode position 1 |
| 255182 | DMX_1_22 | DMX barcode position 1 |
| 255183 | DMX_1_23 | DMX barcode position 1 |
| 255184 | DMX_1_24 | DMX barcode position 1 |
| 255185 | DMX_2_1 | DMX barcode position 2 |
| 255186 | DMX_2_2 | DMX barcode position 2 |
| 255187 | DMX_2_3 | DMX barcode position 2 |
| 255188 | DMX_2_4 | DMX barcode position 2 |
| 255189 | DMX_2_5 | DMX barcode position 2 |
| 255190 | DMX_2_6 | DMX barcode position 2 |
| 255191 | DMX_2_7 | DMX barcode position 2 |
| 255192 | DMX_2_8 | DMX barcode position 2 |
| 255193 | DMX_2_9 | DMX barcode position 2 |
| 255194 | DMX_2_10 | DMX barcode position 2 |
| 255195 | DMX_2_11 | DMX barcode position 2 |
| 255196 | DMX_2_12 | DMX barcode position 2 |
| 255197 | DMX_2_13 | DMX barcode position 2 |
| 255198 | DMX_2_14 | DMX barcode position 2 |
| 255199 | DMX_2_15 | DMX barcode position 2 |
| 255200 | DMX_2_16 | DMX barcode position 2 |
| 255201 | DMX_2_17 | DMX barcode position 2 |
| 255202 | DMX_2_18 | DMX barcode position 2 |
| 255203 | DMX_2_19 | DMX barcode position 2 |
| 255205 | DMX_2_21 | DMX barcode position 2 |
| 255206 | DMX_2_22 | DMX barcode position 2 |
| 255207 | DMX_2_23 | DMX barcode position 2 |
| 255208 | DMX_2_24 | DMX barcode position 2 |
| 255209 | DMX_3_1 | DMX barcode position 3 |
| 255210 | DMX_3_2 | DMX barcode position 3 |
| 255211 | DMX_3_3 | DMX barcode position 3 |
| 255212 | DMX_3_4 | DMX barcode position 3 |
| 255213 | DMX_3_5 | DMX barcode position 3 |
| 255214 | DMX_3_6 | DMX barcode position 3 |
| 255215 | DMX_3_7 | DMX barcode position 3 |
| 255216 | DMX_3_8 | DMX barcode position 3 |
| 255217 | DMX_3_9 | DMX barcode position 3 |
| 255218 | DMX_3_10 | DMX barcode position 3 |
| 255219 | DMX_3_11 | DMX barcode position 3 |
| 255220 | DMX_3_12 | DMX barcode position 3 |
| 255221 | DMX_3_13 | DMX barcode position 3 |
| 255222 | DMX_3_14 | DMX barcode position 3 |
| 255223 | DMX_3_15 | DMX barcode position 3 |
| 255224 | DMX_3_16 | DMX barcode position 3 |
| 255225 | DMX_3_17 | DMX barcode position 3 |
| 255226 | DMX_3_18 | DMX barcode position 3 |
| 255227 | DMX_3_19 | DMX barcode position 3 |
| 255228 | DMX_3_20 | DMX barcode position 3 |
| 255229 | DMX_3_21 | DMX barcode position 3 |
| 255230 | DMX_3_22 | DMX barcode position 3 |
| 255231 | DMX_3_23 | DMX barcode position 3 |
| 255232 | DMX_3_24 | DMX barcode position 3 |
| 255233 | DMX_4_1 | DMX barcode position 4 |
| 255234 | DMX_4_2 | DMX barcode position 4 |
| 255235 | DMX_4_3 | DMX barcode position 4 |
| 255236 | DMX_4_4 | DMX barcode position 4 |
| 255237 | DMX_4_5 | DMX barcode position 4 |
| 255238 | DMX_4_6 | DMX barcode position 4 |
| 255239 | DMX_4_7 | DMX barcode position 4 |
| 255240 | DMX_4_8 | DMX barcode position 4 |
| 255241 | DMX_4_9 | DMX barcode position 4 |
| 255242 | DMX_4_10 | DMX barcode position 4 |
| 255243 | DMX_4_11 | DMX barcode position 4 |
| 255244 | DMX_4_12 | DMX barcode position 4 |
| 255245 | DMX_4_13 | DMX barcode position 4 |
| 255246 | DMX_4_14 | DMX barcode position 4 |
| 255247 | DMX_4_15 | DMX barcode position 4 |
| 255248 | DMX_4_16 | DMX barcode position 4 |
| 255249 | DMX_4_17 | DMX barcode position 4 |
| 255250 | DMX_4_18 | DMX barcode position 4 |
| 255251 | DMX_4_19 | DMX barcode position 4 |
| 255252 | DMX_4_20 | DMX barcode position 4 |
| 255253 | DMX_4_21 | DMX barcode position 4 |
| 255254 | DMX_4_22 | DMX barcode position 4 |
| 255255 | DMX_4_23 | DMX barcode position 4 |
| 255256 | DMX_4_24 | DMX barcode position 4 |