| Selected features |
| CAG_enhancer | | 84 - 371 |  | CAG_enhancer |  | acataacttacggtaaatggcccgcctggctgaccgcccaacgacccccgcccattgacg tcaataatgacgtatgttcccatagtaacgccaatagggactttccattgacgtcaatgg gtggactatttacggtaaactgcccacttggcagtacatcaagtgtatcatatgccaagt acgccccctattgacgtcaatgacggtaaatggcccgcctggcattatgcccagtacatg accttatgggactttcctacttggcagtacatctacgtattagtcatc |
|
| Orf frame 1 | | 1533 - 802 |  | Orf frame 1 |  | atggagaaggggacggcggcgcggcgacgcacgaaggccctccccgcccatttccttcct gccggcgccgcaccgcttcgcccgcgcccgctagagggggtgcggcggcgcctcccagat ttcggctccgccagatttgggacaaaggaagtccctgcgccctctcgcacgattaccata aaaggcaatggctgcggctcgccgcgcctcgacagccgccggcgctccggggccgccgcg cccctcccccgagccctccccggcccgaggcggccccgccccgcccggcacccccacctg ccgccaccccccgcccggcacggcgagccccgcgccacgccccgcacggagccccgcacc cgaagccgggccgtgctcagcaactcggggaggggggtgcaggggggggttacagcccga ccgccgcgcccacaccccctgctcacccccccacgcacacaccccgcacgcagcctttgt tcccctcgcagcccccccgcaccgcggggcaccgcccccggccgcgctcccctcgcgcac acgcggagcgcacaaagccccgcgccgcgcccgcagcgctcacagccgccgggcagcgcg ggccgcacgcggcgctccccacgcacacacacacgcacgcaccccccgagccgctccccc ccgcacaaagggccctcccggagccctttaaggctttcacgcagccacagaaaagaaacg agccgtcattaa |
|
| pCAG_F_primer | | 1678 - 1697 |  | pCAG_F_primer |  | | gcaacgtgctggttattgtg |
|
| Orf frame 1 | | 1780 - 3282 |  | Orf frame 1 |  | atgggtgcgagagcgtcagtattaagcgggggagaattagatcgatgggaaaaaattcgg ttaaggccagggggaaagaaaaaatataaattaaaacatatagtatgggcaagcagggag ctagaacgattcgcagttaatcctggcctgttagaaacatcagaaggctgtagacaaata ctgggacagctacaaccatcccttcagacaggatcagaagaacttagatcattatataat acagtagcaaccctctattgtgtgcatcaaaggatagagataaaagacaccaaggaagct ttagacaagatagaggaagagcaaaacaaaagtaagaaaaaagcacagcaagcagcagct gacacaggacacagcaatcaggtcagccaaaattaccctatagtgcagaacatccagggg caaatggtacatcaggccatatcacctagaactttaaatgcatgggtaaaagtagtagaa gagaaggctttcagcccagaagtgatacccatgttttcagcattatcagaaggagccacc ccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatg ttaaaagagaccatcaatgaggaagctgcagaatgggatagagtgcatccagtgcatgca gggcctattgcaccaggccagatgagagaaccaaggggaagtgacatagcaggaactact agtacccttcaggaacaaataggatggatgacacataatccacctatcccagtaggagaa atctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctacc agcattctggacataagacaaggaccaaaggaaccctttagagactatgtagaccgattc tataaaactctaagagccgagcaagcttcacaagaggtaaaaaattggatgacagaaacc ttgttggtccaaaatgcgaacccagattgtaagactattttaaaagcattgggaccagga gcgacactagaagaaatgatgacagcatgtcagggagtggggggacccggccataaagca agagttttggctgaagcaatgagccaagtaacaaatccagctaccataatgatacagaaa ggcaattttaggaaccaaagaaagactgttaagtgtttcaattgtggcaaagaagggcac atagccaaaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggaagga caccaaatgaaagattgtactgagagacaggctaattttttagggaagatctggccttcc cacaagggaaggccagggaattttcttcagagcagaccagagccaacagccccaccagaa gagagcttcaggtttggggaagagacaacaactccctctcagaagcaggagccgatagac aaggaactgtatcctttagcttccctcagatcactctttggcagcgacccctcgtcacaa taa |
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| Gag_HIV(variant) | | 1780 - 3282 |  | Gag_HIV(variant) |  | atgggtgcgagagcgtcagtattaagcgggggagaattagatcgatgggaaaaaattcgg ttaaggccagggggaaagaaaaaatataaattaaaacatatagtatgggcaagcagggag ctagaacgattcgcagttaatcctggcctgttagaaacatcagaaggctgtagacaaata ctgggacagctacaaccatcccttcagacaggatcagaagaacttagatcattatataat acagtagcaaccctctattgtgtgcatcaaaggatagagataaaagacaccaaggaagct ttagacaagatagaggaagagcaaaacaaaagtaagaaaaaagcacagcaagcagcagct gacacaggacacagcaatcaggtcagccaaaattaccctatagtgcagaacatccagggg caaatggtacatcaggccatatcacctagaactttaaatgcatgggtaaaagtagtagaa gagaaggctttcagcccagaagtgatacccatgttttcagcattatcagaaggagccacc ccacaagatttaaacaccatgctaaacacagtggggggacatcaagcagccatgcaaatg ttaaaagagaccatcaatgaggaagctgcagaatgggatagagtgcatccagtgcatgca gggcctattgcaccaggccagatgagagaaccaaggggaagtgacatagcaggaactact agtacccttcaggaacaaataggatggatgacacataatccacctatcccagtaggagaa atctataaaagatggataatcctgggattaaataaaatagtaagaatgtatagccctacc agcattctggacataagacaaggaccaaaggaaccctttagagactatgtagaccgattc tataaaactctaagagccgagcaagcttcacaagaggtaaaaaattggatgacagaaacc ttgttggtccaaaatgcgaacccagattgtaagactattttaaaagcattgggaccagga gcgacactagaagaaatgatgacagcatgtcagggagtggggggacccggccataaagca agagttttggctgaagcaatgagccaagtaacaaatccagctaccataatgatacagaaa ggcaattttaggaaccaaagaaagactgttaagtgtttcaattgtggcaaagaagggcac atagccaaaaattgcagggcccctaggaaaaagggctgttggaaatgtggaaaggaagga caccaaatgaaagattgtactgagagacaggctaattttttagggaagatctggccttcc cacaagggaaggccagggaattttcttcagagcagaccagagccaacagccccaccagaa gagagcttcaggtttggggaagagacaacaactccctctcagaagcaggagccgatagac aaggaactgtatcctttagcttccctcagatcactctttggcagcgacccctcgtcacaa taa |
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| Orf frame 3 | | 3348 - 6086 |  | Orf frame 3 |  | atgaatttgccaggaagatggaaaccaaaaatgatagggggaattggaggttttatcaaa gtaggacagtatgatcagatactcatagaaatctgcggacataaagctataggtacagta ttagtaggacctacacctgtcaacataattggaagaaatctgttgactcagattggctgc actttaaattttcccattagtcctattgagactgtaccagtaaaattaaagccaggaatg gatggcccaaaagttaaacaatggccattgacagaagaaaaaataaaagcattagtagaa atttgtacagaaatggaaaaggaaggaaaaatttcaaaaattgggcctgaaaatccatac aatactccagtatttgccataaagaaaaaagacagtactaaatggagaaaattagtagat ttcagagaacttaataagagaactcaagatttctgggaagttcaattaggaataccacat cctgcagggttaaaacagaaaaaatcagtaacagtactggatgtgggcgatgcatatttt tcagttcccttagataaagacttcaggaagtatactgcatttaccatacctagtataaac aatgagacaccagggattagatatcagtacaatgtgcttccacagggatggaaaggatca ccagcaatattccagtgtagcatgacaaaaatcttagagccttttagaaaacaaaatcca gacatagtcatctatcaatacatggatgatttgtatgtaggatctgacttagaaataggg cagcatagaacaaaaatagaggaactgagacaacatctgttgaggtggggatttaccaca ccagacaaaaaacatcagaaagaacctccattcctttggatgggttatgaactccatcct gataaatggacagtacagcctatagtgctgccagaaaaggacagctggactgtcaatgac atacagaaattagtgggaaaattgaattgggcaagtcagatttatgcagggattaaagta aggcaattatgtaaacttcttaggggaaccaaagcactaacagaagtagtaccactaaca gaagaagcagagctagaactggcagaaaacagggagattctaaaagaaccggtacatgga gtgtattatgacccatcaaaagacttaatagcagaaatacagaagcaggggcaaggccaa tggacatatcaaatttatcaagagccatttaaaaatctgaaaacaggaaaatatgcaaga atgaagggtgcccacactaatgatgtgaaacaattaacagaggcagtacaaaaaatagcc acagaaagcatagtaatatggggaaagactcctaaatttaaattacccatacaaaaggaa acatgggaagcatggtggacagagtattggcaagccacctggattcctgagtgggagttt gtcaatacccctcccttagtgaagttatggtaccagttagagaaagaacccataatagga gcagaaactttctatgtagatggggcagccaatagggaaactaaattaggaaaagcagga tatgtaactgacagaggaagacaaaaagttgtccccctaacggacacaacaaatcagaag actgagttacaagcaattcatctagctttgcaggattcgggattagaagtaaacatagtg acagactcacaatatgcattgggaatcattcaagcacaaccagataagagtgaatcagag ttagtcagtcaaataatagagcagttaataaaaaaggaaaaagtctacctggcatgggta ccagcacacaaaggaattggaggaaatgaacaagtagatgggttggtcagtgctggaatc aggaaagtactatttttagatggaatagataaggcccaagaagaacatgagaaatatcac agtaattggagagcaatggctagtgattttaacctaccacctgtagtagcaaaagaaata gtagccagctgtgataaatgtcagctaaaaggggaagccatgcatggacaagtagactgt agcccaggaatatggcagctagattgtacacatttagaaggaaaagttatcttggtagca gttcatgtagccagtggatatatagaagcagaagtaattccagcagagacagggcaagaa acagcatacttcctcttaaaattagcaggaagatggccagtaaaaacagtacatacagac aatggcagcaatttcaccagtactacagttaaggccgcctgttggtgggcggggatcaag caggaatttggcattccctacaatccccaaagtcaaggagtaatagaatctatgaataaa gaattaaagaaaattataggacaggtaagagatcaggctgaacatcttaagacagcagta caaatggcagtattcatccacaattttaaaagaaaaggggggattggggggtacagtgca ggggaaagaatagtagacataatagcaacagacatacaaactaaagaattacaaaaacaa attacaaaaattcaaaattttcgggtttattacagggacagcagagatccagtttggaaa ggaccagcaaagctcctctggaaaggtgaaggggcagtagtaatacaagataatagtgac ataaaagtagtgccaagaagaaaagcaaagatcatcagggattatggaaaacagatggca ggtgatgattgtgtggcaagtagacaggatgaggattaa |
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| cPPT | | 5775 - 5790 |  | cPPT |  | | aaaagaaaagggggga |
|
| RRE | | 6660 - 6893 |  | RRE |  | aggagctttgttccttgggttcttgggagcagcaggaagcactatgggcgcagcctcaat gacgctgacggtacaggccagacaattattgtctggtatagtgcagcagcagaacaattt gctgagggctattgaggcgcaacagcatctgttgcaactcacagtctggggcatcaagca gctccaagcaagaatcctagctgtggaaagatacctaaaggatcaacagctcct |
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| Orf frame 1 | | 6538 - 7686 |  | Orf frame 1 |  | atgagggacaattggagaagtgaattatataaatataaagtagtaaaaattgaaccatta ggagtagcacccaccaaggcaaagagaagagtggtgcagagagaaaaaagagcagtggga ataggagctttgttccttgggttcttgggagcagcaggaagcactatgggcgcagcctca atgacgctgacggtacaggccagacaattattgtctggtatagtgcagcagcagaacaat ttgctgagggctattgaggcgcaacagcatctgttgcaactcacagtctggggcatcaag cagctccaagcaagaatcctagctgtggaaagatacctaaaggatcaacagctcctaggg atttggggttgctctggaaaactcatttgcaccactgctgtgccttggaatgctagttgg agtaataaatctctggaacagatctggaatcacacgacctggatggagtgggacagagaa attaacaattacacaagcttaatacactccttaattgaagaatcgcaaaaccagcaagaa aagaatgaacaagaattattggaattagataaatgggcaagtttgtggaattggtttaac ataacaaattggctgtggtatataaaattattcataatgatagtaggaggcttggtaggt ttaagaatagtttttgctgtactttctatagtgaatagagttaggcagggatattcacca ttatcgtttcagacccacctcccaatcccgaggggacccgacaggcccgaaggaatagaa gaagaaggtggagagagagacagagacagatccattcgattagtgaacggatccttggca cttatctgggacgatctgcggagcctgtgcctcttcagctaccaccgcttgagagactta ctcttgattgtaacgaggattgtggaacttctgggacgcagggggtgggaagccctcaaa tattggtggaatctcctacaatattggagtcaggagctaaagaatagtgctgttagcttg ctcaatgccacagccatagcagtagctgaggggacagatagggttatagaagtagtacaa ggagcttgtagagctattcgccacatacctagaagaataagacagggcttggaaaggatt ttgctataa |
|
| HIV_Rev_NES | | 7416 - 7445 |  | HIV_Rev_NES |  | | ctaccaccgcttgagagacttactcttgat |
|
| rb_glob_PA_terminator | | 7731 - 8160 |  | rb_glob_PA_terminator |  | tttccctctgccaaaaattatggggacatcatgaagccccttgagcatctgacttctggc taataaaggaaatttattttcattgcaatagtgtgttggaattttttgtgtctctcactc ggaaggacatatgggagggcaaatcatttaaaacatcagaatgagtatttggtttagagt ttggcaacatatgccatatgctggctgccatgaacaaaggtggctataaagaggtcatca gtatatgaaacagccccctgctgtccattccttattccatagaaaagccttgacttgagg ttagattttttttatattttgttttgtgttatttttttctttaacatccctaaaattttc cttacatgttttactagccagatttttcctcctctcctgactactcccagtcatagctgt ccctcttctc |
|
| M13_reverse_primer | | 8220 - 8202 |  | M13_reverse_primer |  | | ggaaacagctatgaccatg |
|
| M13_pUC_rev_primer | | 8241 - 8219 |  | M13_pUC_rev_primer |  | | agcggataacaatttcacacagg |
|
| lac_promoter | | 8284 - 8255 |  | lac_promoter |  | | tttacactttatgcttccggctcgtatgtt |
|
| SV40_origin | | 8425 - 8502 |  | SV40_origin |  | atcccgcccctaactccgcccagttccgcccattctccgccccatggctgactaattttt tttatttatgcagaggcc |
|
| SV40_promoter | | 8390 - 8569 |  | SV40_promoter |  | agtcagcaaccatagtcccgcccctaactccgcccatcccgcccctaactccgcccagtt ccgcccattctccgccccatggctgactaattttttttatttatgcagaggccgaggccg cctcggcctctgagctattccagaagtagtgaggaggcttttttggaggcctaggctttt
|
|
| SV40pro_F_primer | | 8487 - 8506 |  | SV40pro_F_primer |  | | tatttatgcagaggccgagg |
|
| SV40_PA_terminator | | 8583 - 8714 |  | SV40_PA_terminator |  | ttgtttattgcagcttataatggttacaaataaagcaatagcatcacaaatttcacaaat aaagcatttttttcactgcattctagttgtggtttgtccaaactcatcaatgtatcttat catgtctggatc |
|
| EBV_rev_primer | | 8671 - 8690 |  | EBV_rev_primer |  | | gtggtttgtccaaactcatc |
|
| pBR322_origin | | 9557 - 8938 |  | pBR322_origin |  | agatcaaaggatcttcttgagatcctttttttctgcgcgtaatctgctgcttgcaaacaa aaaaaccaccgctaccagcggtggtttgtttgccggatcaagagctaccaactctttttc cgaaggtaactggcttcagcagagcgcagataccaaatactgtccttctagtgtagccgt agttaggccaccacttcaagaactctgtagcaccgcctacatacctcgctctgctaatcc tgttaccagtggctgctgccagtggcgataagtcgtgtcttaccgggttggactcaagac gatagttaccggataaggcgcagcggtcgggctgaacggggggttcgtgcacacagccca gcttggagcgaacgacctacaccgaactgagatacctacagcgtgagcattgagaaagcg ccacgcttcccgaagggagaaaggcggacaggtatccggtaagcggcagggtcggaacag gagagcgcacgagggagcttccagggggaaacgcctggtatctttatagtcctgtcgggt ttcgccacctctgacttgagcgtcgatttttgtgatgctcgtcaggggggcggagcctat ggaaaaacgccagcaacgcg |
|
| Orf frame 1 | | 10572 - 9712 |  | Orf frame 1 |  | atgagtattcaacatttccgtgtcgcccttattcccttttttgcggcattttgccttcct gtttttgctcacccagaaacgctggtgaaagtaaaagatgctgaagatcagttgggtgca cgagtgggttacatcgaactggatctcaacagcggtaagatccttgagagttttcgcccc gaagaacgttttccaatgatgagcacttttaaagttctgctatgtggcgcggtattatcc cgtattgacgccgggcaagagcaactcggtcgccgcatacactattctcagaatgacttg gttgagtactcaccagtcacagaaaagcatcttacggatggcatgacagtaagagaatta tgcagtgctgccataaccatgagtgataacactgcggccaacttacttctgacaacgatc ggaggaccgaaggagctaaccgcttttttgcacaacatgggggatcatgtaactcgcctt gatcgttgggaaccggagctgaatgaagccataccaaacgacgagcgtgacaccacgatg cctgtagcaatggcaacaacgttgcgcaaactattaactggcgaactacttactctagct tcccggcaacaattaatagactggatggaggcggataaagttgcaggaccacttctgcgc tcggcccttccggctggctggtttattgctgataaatctggagccggtgagcgtgggtct cgcggtatcattgcagcactggggccagatggtaagccctcccgtatcgtagttatctac acgacggggagtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcc tcactgattaagcattggtaa |
|
| Ampicillin | | 10572 - 9712 |  | Ampicillin |  | atgagtattcaacatttccgtgtcgcccttattcccttttttgcggcattttgccttcct gtttttgctcacccagaaacgctggtgaaagtaaaagatgctgaagatcagttgggtgca cgagtgggttacatcgaactggatctcaacagcggtaagatccttgagagttttcgcccc gaagaacgttttccaatgatgagcacttttaaagttctgctatgtggcgcggtattatcc cgtattgacgccgggcaagagcaactcggtcgccgcatacactattctcagaatgacttg gttgagtactcaccagtcacagaaaagcatcttacggatggcatgacagtaagagaatta tgcagtgctgccataaccatgagtgataacactgcggccaacttacttctgacaacgatc ggaggaccgaaggagctaaccgcttttttgcacaacatgggggatcatgtaactcgcctt gatcgttgggaaccggagctgaatgaagccataccaaacgacgagcgtgacaccacgatg cctgtagcaatggcaacaacgttgcgcaaactattaactggcgaactacttactctagct tcccggcaacaattaatagactggatggaggcggataaagttgcaggaccacttctgcgc tcggcccttccggctggctggtttattgctgataaatctggagccggtgagcgtgggtct cgcggtatcattgcagcactggggccagatggtaagccctcccgtatcgtagttatctac acgacggggagtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcc tcactgattaagcattggtaa |
|
| AmpR_promoter | | 10642 - 10614 |  | AmpR_promoter |  | | ttcaaatatgtatccgctcatgagacaat |
|