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pKD4 Citations (15)

Originally described in: One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products.
Datsenko KA, Wanner BL Proc Natl Acad Sci U S A. 2000 Jun 6;97(12):6640-5.
PubMed Journal

Articles Citing pKD4

Coupling next-generation sequencing to dominant positive screens for finding antibiotic cellular targets and resistance mechanisms in Escherichia coli. Gingras H, Dridi B, Leprohon P, Ouellette M. Microb Genom. 2018 Jan 10. doi: 10.1099/mgen.0.000148. PubMed
The role of the acyl-CoA thioesterase "YciA" in the production of (R)-3-hydroxybutyrate by recombinant Escherichia coli. Guevara-Martinez M, Perez-Zabaleta M, Gustavsson M, Quillaguaman J, Larsson G, van Maris AJA. Appl Microbiol Biotechnol. 2019 May;103(9):3693-3704. doi: 10.1007/s00253-019-09707-0. Epub 2019 Mar 5. PubMed
Comparison of engineered Escherichia coli AF1000 and BL21 strains for (R)-3-hydroxybutyrate production in fed-batch cultivation. Perez-Zabaleta M, Guevara-Martinez M, Gustavsson M, Quillaguaman J, Larsson G, van Maris AJA. Appl Microbiol Biotechnol. 2019 Jul;103(14):5627-5639. doi: 10.1007/s00253-019-09876-y. Epub 2019 May 18. PubMed
Host-Microbe-Drug-Nutrient Screen Identifies Bacterial Effectors of Metformin Therapy. Pryor R, Norvaisas P, Marinos G, Best L, Thingholm LB, Quintaneiro LM, De Haes W, Esser D, Waschina S, Lujan C, Smith RL, Scott TA, Martinez-Martinez D, Woodward O, Bryson K, Laudes M, Lieb W, Houtkooper RH, Franke A, Temmerman L, Bjedov I, Cocheme HM, Kaleta C, Cabreiro F. Cell. 2019 Sep 5;178(6):1299-1312.e29. doi: 10.1016/j.cell.2019.08.003. Epub 2019 Aug 29. PubMed
Cell Width Dictates Type VI Secretion Tail Length. Santin YG, Doan T, Journet L, Cascales E. Curr Biol. 2019 Nov 4;29(21):3707-3713.e3. doi: 10.1016/j.cub.2019.08.058. Epub 2019 Oct 17. PubMed
Overproduction of Exopolysaccharide Colanic Acid by Escherichia coli by Strain Engineering and Media Optimization. Han HM, Kim IJ, Yun EJ, Lee JW, Cho Y, Jin YS, Kim KH. Appl Biochem Biotechnol. 2021 Jan;193(1):111-127. doi: 10.1007/s12010-020-03409-4. Epub 2020 Aug 21. PubMed
Large metabolic rewiring from small genomic changes between strains of Shigella flexneri. Doore SM, Subramanian S, Tefft NM, Morona R, TerAvest MA, Parent KN. J Bacteriol. 2021 Mar 22. pii: JB.00056-21. doi: 10.1128/JB.00056-21. PubMed
A Novel Plasmid Entry Exclusion System in pKPC_UVA01, a Promiscuous Conjugative Plasmid Carrying the blaKPC Carbapenemase Gene. Kamruzzaman M, Mathers AJ, Iredell JR. Antimicrob Agents Chemother. 2022 Mar 15;66(3):e0232221. doi: 10.1128/aac.02322-21. Epub 2022 Jan 10. PubMed
Phages and their satellites encode hotspots of antiviral systems. Rousset F, Depardieu F, Miele S, Dowding J, Laval AL, Lieberman E, Garry D, Rocha EPC, Bernheim A, Bikard D. Cell Host Microbe. 2022 May 11;30(5):740-753.e5. doi: 10.1016/j.chom.2022.02.018. Epub 2022 Mar 21. PubMed
Direct measurements of mRNA translation kinetics in living cells. Metelev M, Lundin E, Volkov IL, Gynna AH, Elf J, Johansson M. Nat Commun. 2022 Apr 6;13(1):1852. doi: 10.1038/s41467-022-29515-x. PubMed
Akaby-Cell-free protein expression system for linear templates. Sato W, Sharon J, Deich C, Gaut N, Cash B, Engelhart AE, Adamala KP. PLoS One. 2022 Apr 7;17(4):e0266272. doi: 10.1371/journal.pone.0266272. eCollection 2022. PubMed

Associated Plasmids

On the flexibility of the cellular amination network in E coli. Schulz-Mirbach H, Muller A, Wu T, Pfister P, Aslan S, Schada von Borzyskowski L, Erb TJ, Bar-Even A, Lindner SN. Elife. 2022 Jul 25;11:e77492. doi: 10.7554/eLife.77492. PubMed
Quantitative dose-response analysis untangles host bottlenecks to enteric infection. Campbell IW, Hullahalli K, Turner JR, Waldor MK. Nat Commun. 2023 Jan 28;14(1):456. doi: 10.1038/s41467-023-36162-3. PubMed
Real-time single-molecule 3D tracking in E. coli based on cross-entropy minimization. Amselem E, Broadwater B, Havermark T, Johansson M, Elf J. Nat Commun. 2023 Mar 11;14(1):1336. doi: 10.1038/s41467-023-36879-1. PubMed
A gene expression control technology for cell-free systems and synthetic cells via targeted gene silencing and transfection. Sato W, Rasmussen M, Gaut N, Devarajan M, Stokes K, Deich C, Engelhart AE, Adamala KP. Biotechnol Bioeng. 2023 Jul;120(7):1986-1997. doi: 10.1002/bit.28422. Epub 2023 May 9. PubMed

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