pAAV-Syn-ChrimsonR-tdT Citations (44)
Originally described in: Independent optical excitation of distinct neural populations.Klapoetke NC, Murata Y, Kim SS, Pulver SR, Birdsey-Benson A, Cho YK, Morimoto TK, Chuong AS, Carpenter EJ, Tian Z, Wang J, Xie Y, Yan Z, Zhang Y, Chow BY, Surek B, Melkonian M, Jayaraman V, Constantine-Paton M, Wong GK, Boyden ES Nat Methods. 2014 Mar;11(3):338-46. doi: 10.1038/nmeth.2836. Epub 2014 Feb 9. PubMed Journal
Articles Citing pAAV-Syn-ChrimsonR-tdT
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| Punishment-Predictive Cues Guide Avoidance through Potentiation of Hypothalamus-to-Habenula Synapses. Trusel M, Nuno-Perez A, Lecca S, Harada H, Lalive AL, Congiu M, Takemoto K, Takahashi T, Ferraguti F, Mameli M. Neuron. 2019 Apr 3;102(1):120-127.e4. doi: 10.1016/j.neuron.2019.01.025. Epub 2019 Feb 11. PubMed |
| Complementary Roles for Ventral Pallidum Cell Types and Their Projections in Relapse. Prasad AA, Xie C, Chaichim C, Nguyen JH, McClusky HE, Killcross S, Power JM, McNally GP. J Neurosci. 2020 Jan 22;40(4):880-893. doi: 10.1523/JNEUROSCI.0262-19.2019. Epub 2019 Dec 9. PubMed |
| Microbiota modulate sympathetic neurons via a gut-brain circuit. Muller PA, Schneeberger M, Matheis F, Wang P, Kerner Z, Ilanges A, Pellegrino K, Del Marmol J, Castro TBR, Furuichi M, Perkins M, Han W, Rao A, Pickard AJ, Cross JR, Honda K, de Araujo I, Mucida D. Nature. 2020 Jul;583(7816):441-446. doi: 10.1038/s41586-020-2474-7. Epub 2020 Jul 8. PubMed |
Limited functional convergence of eye-specific inputs in the retinogeniculate pathway of the mouse.
Bauer J, Weiler S, Fernholz MHP, Laubender D, Scheuss V, Hubener M, Bonhoeffer T, Rose T.
Neuron. 2021 Aug 4;109(15):2457-2468.e12. doi: 10.1016/j.neuron.2021.05.036. Epub 2021 Jun 18.
PubMed
Associated Plasmids |
| Extinction blunts paraventricular thalamic contributions to heroin relapse. Giannotti G, Gong S, Fayette N, Heinsbroek JA, Orfila JE, Herson PS, Ford CP, Peters J. Cell Rep. 2021 Aug 24;36(8):109605. doi: 10.1016/j.celrep.2021.109605. PubMed |
| Olivocerebellar control of movement symmetry. Romano V, Zhai P, van der Horst A, Mazza R, Jacobs T, Bauer S, Wang X, White JJ, De Zeeuw CI. Curr Biol. 2022 Feb 7;32(3):654-670.e4. doi: 10.1016/j.cub.2021.12.020. Epub 2022 Jan 10. PubMed |
| Acute restraint stress redirects prefrontal cortex circuit function through mGlu5 receptor plasticity on somatostatin-expressing interneurons. Joffe ME, Maksymetz J, Luschinger JR, Dogra S, Ferranti AS, Luessen DJ, Gallinger IM, Xiang Z, Branthwaite H, Melugin PR, Williford KM, Centanni SW, Shields BC, Lindsley CW, Calipari ES, Siciliano CA, Niswender CM, Tadross MR, Winder DG, Conn PJ. Neuron. 2022 Mar 16;110(6):1068-1083.e5. doi: 10.1016/j.neuron.2021.12.027. Epub 2022 Jan 18. PubMed |
| (2R,6R)-hydroxynorketamine rapidly potentiates optically-evoked Schaffer collateral synaptic activity. Riggs LM, Thompson SM, Gould TD. Neuropharmacology. 2022 Aug 15;214:109153. doi: 10.1016/j.neuropharm.2022.109153. Epub 2022 May 31. PubMed |
| Non-invasive optogenetics with ultrasound-mediated gene delivery and red-light excitation. Pouliopoulos AN, Murillo MF, Noel RL, Batts AJ, Ji R, Kwon N, Yu H, Tong CK, Gelinas JN, Araghy DK, Hussaini SA, Konofagou EE. Brain Stimul. 2022 Jul-Aug;15(4):927-941. doi: 10.1016/j.brs.2022.06.007. Epub 2022 Jun 16. PubMed |
| Chronic Intermittent Ethanol Exposure Dysregulates Nucleus Basalis Magnocellularis Afferents in the Basolateral Amygdala. Sizer SE, Price ME, Parrish BC, Barth SH, Heaney CF, Raab-Graham KF, McCool BA. eNeuro. 2022 Nov 15;9(6):ENEURO.0164-22.2022. doi: 10.1523/ENEURO.0164-22.2022. Print 2022 Nov-Dec. PubMed |
| High-speed, scanned laser structuring of multi-layered eco/bioresorbable materials for advanced electronic systems. Yang Q, Hu Z, Seo MH, Xu Y, Yan Y, Hsu YH, Berkovich J, Lee K, Liu TL, McDonald S, Nie H, Oh H, Wu M, Kim JT, Miller SA, Jia Y, Butun S, Bai W, Guo H, Choi J, Banks A, Ray WZ, Kozorovitskiy Y, Becker ML, Pet MA, MacEwan MR, Chang JK, Wang H, Huang Y, Rogers JA. Nat Commun. 2022 Oct 31;13(1):6518. doi: 10.1038/s41467-022-34173-0. PubMed |
| High throughput 3D gel-based neural organotypic model for cellular assays using fluorescence biosensors. Kundu S, Boutin ME, Strong CE, Voss T, Ferrer M. Commun Biol. 2022 Nov 12;5(1):1236. doi: 10.1038/s42003-022-04177-z. PubMed |
| A cortico-collicular circuit for orienting to shelter during escape. Campagner D, Vale R, Tan YL, Iordanidou P, Pavon Arocas O, Claudi F, Stempel AV, Keshavarzi S, Petersen RS, Margrie TW, Branco T. Nature. 2023 Jan;613(7942):111-119. doi: 10.1038/s41586-022-05553-9. Epub 2022 Dec 21. PubMed |
| Pattern of Driver-Like Input onto Neurons of the Mouse Ventral Lateral Geniculate Nucleus. Govindaiah G, Fox MA, Guido W. eNeuro. 2023 Jan 18;10(1):ENEURO.0386-22.2022. doi: 10.1523/ENEURO.0386-22.2022. Print 2023 Jan. PubMed |
| A flexible and versatile system for multi-color fiber photometry and optogenetic manipulation. Formozov A, Dieter A, Wiegert JS. Cell Rep Methods. 2023 Mar 7;3(3):100418. doi: 10.1016/j.crmeth.2023.100418. eCollection 2023 Mar 27. PubMed |
| Interhemispheric cortical long-term potentiation in the auditory cortex requires heterosynaptic activation of entorhinal projection. Li X, He L, Hu X, Huang F, Wang X, Chen M, Yoon EG, Bello ST, Chen T, Chen X, Tang P, Chen C, Qu J, He J. iScience. 2023 Mar 31;26(4):106542. doi: 10.1016/j.isci.2023.106542. eCollection 2023 Apr 21. PubMed |
| Practical considerations in an era of multicolor optogenetics. Rindner DJ, Lur G. Front Cell Neurosci. 2023 May 24;17:1160245. doi: 10.3389/fncel.2023.1160245. eCollection 2023. PubMed |
| Assessment of Different Niosome Formulations for Optogenetic Applications: Morphological and Electrophysiological Effects. Celdran JD, Humphreys L, Gonzalez D, Soto-Sanchez C, Martinez-Navarrete G, Maldonado I, Gallego I, Villate-Beitia I, Sainz-Ramos M, Puras G, Pedraz JL, Fernandez E. Pharmaceutics. 2023 Jul 1;15(7):1860. doi: 10.3390/pharmaceutics15071860. PubMed |
| Change detection in the primate auditory cortex through feedback of prediction error signals. Obara K, Ebina T, Terada SI, Uka T, Komatsu M, Takaji M, Watakabe A, Kobayashi K, Masamizu Y, Mizukami H, Yamamori T, Kasai K, Matsuzaki M. Nat Commun. 2023 Nov 13;14(1):6981. doi: 10.1038/s41467-023-42553-3. PubMed |
| In vitro modeling of the human dopaminergic system using spatially arranged ventral midbrain-striatum-cortex assembloids. Reumann D, Krauditsch C, Novatchkova M, Sozzi E, Wong SN, Zabolocki M, Priouret M, Doleschall B, Ritzau-Reid KI, Piber M, Morassut I, Fieseler C, Fiorenzano A, Stevens MM, Zimmer M, Bardy C, Parmar M, Knoblich JA. Nat Methods. 2023 Dec;20(12):2034-2047. doi: 10.1038/s41592-023-02080-x. Epub 2023 Dec 5. PubMed |
| Restoration of a paraventricular thalamo-accumbal behavioral suppression circuit prevents reinstatement of heroin seeking. Paniccia JE, Vollmer KM, Green LM, Grant RI, Winston KT, Buchmaier S, Westphal AM, Clarke RE, Doncheck EM, Bordieanu B, Manusky LM, Martino MR, Ward AL, Rinker JA, McGinty JF, Scofield MD, Otis JM. Neuron. 2024 Mar 6;112(5):772-785.e9. doi: 10.1016/j.neuron.2023.11.024. Epub 2023 Dec 22. PubMed |
| Protocol for induction of heterosynaptic long-term potentiation in the mouse hippocampus via dual-opsin stimulation technique. Huang F, Bello ST, Baset A, Chen X, He J. STAR Protoc. 2024 Mar 15;5(1):102860. doi: 10.1016/j.xpro.2024.102860. Epub 2024 Feb 1. PubMed |
| Preferential transduction of parvalbumin-expressing cortical neurons by AAV-mDLX5/6 vectors. Yazdan-Shahmorad P, Gibson S, Lee JC, Horwitz GD. Front Neurosci. 2024 Feb 12;17:1269025. doi: 10.3389/fnins.2023.1269025. eCollection 2023. PubMed |
| All-optical presynaptic plasticity induction by photoactivated adenylyl cyclase targeted to axon terminals. Nagase M, Nagashima T, Hamada S, Morishima M, Tohyama S, Arima-Yoshida F, Hiyoshi K, Hirano T, Ohtsuka T, Watabe AM. Cell Rep Methods. 2024 Apr 22;4(4):100740. doi: 10.1016/j.crmeth.2024.100740. Epub 2024 Mar 22. PubMed |
| Probing intracellular potassium dynamics in neurons with the genetically encoded sensor lc-LysM GEPII 1.0 in vitro and in vivo. Groschup B, Calandra GM, Raitmayr C, Shrouder J, Llovera G, Zaki AG, Burgstaller S, Bischof H, Eroglu E, Liesz A, Malli R, Filser S, Plesnila N. Sci Rep. 2024 Jun 14;14(1):13753. doi: 10.1038/s41598-024-62993-1. PubMed |
| Convergent direct and indirect cortical streams shape avoidance decisions in mice via the midline thalamus. Ma J, O'Malley JJ, Kreiker M, Leng Y, Khan I, Kindel M, Penzo MA. Nat Commun. 2024 Aug 4;15(1):6598. doi: 10.1038/s41467-024-50941-6. PubMed |
| Human assembloids reveal the consequences of CACNA1G gene variants in the thalamocortical pathway. Kim JI, Miura Y, Li MY, Revah O, Selvaraj S, Birey F, Meng X, Thete MV, Pavlov SD, Andersen J, Pasca AM, Porteus MH, Huguenard JR, Pasca SP. Neuron. 2024 Dec 18;112(24):4048-4059.e7. doi: 10.1016/j.neuron.2024.09.020. Epub 2024 Oct 16. PubMed |
| Thalamic integration of basal ganglia and cerebellar circuits during motor learning. Roth RH, Muniak MA, Huang CJ, Hwang FJ, Sun Y, Min C, Mao T, Ding JB. bioRxiv [Preprint]. 2024 Nov 1:2024.10.31.621388. doi: 10.1101/2024.10.31.621388. PubMed |
| Dissociable roles of central striatum and anterior lateral motor area in initiating and sustaining naturalistic behavior. Corbit VL, Piantadosi SC, Wood J, Madireddy SS, Choi CJY, Witten IB, Gittis AH, Ahmari SE. Cell Rep. 2025 Jan 28;44(1):115181. doi: 10.1016/j.celrep.2024.115181. Epub 2025 Jan 8. PubMed |
| Cortical HFS-Induced Neo-Hebbian Local Plasticity Enhances Efferent Output Signal and Strengthens Afferent Input Connectivity. Li X, Wang X, Hu X, Tang P, Chen C, He L, Chen M, Bello ST, Chen T, Wang X, Wong YT, Sun W, Chen X, Qu J, He J. eNeuro. 2025 Feb 10;12(2):ENEURO.0045-24.2024. doi: 10.1523/ENEURO.0045-24.2024. Print 2025 Feb. PubMed |
| A subcortical switchboard for perseverative, exploratory and disengaged states. Ahmadlou M, Shirazi MY, Zhang P, Rogers ILM, Dziubek J, Young M, Hofer SB. Nature. 2025 May;641(8061):151-161. doi: 10.1038/s41586-025-08672-1. Epub 2025 Mar 5. PubMed |
| Distinct neural responses of ventromedial prefrontal cortex-projecting nucleus reuniens neurons during aversive memory extinction. Mochizuki Y, Joji-Nishino A, Emoto K, Uematsu A. Mol Brain. 2025 Mar 5;18(1):18. doi: 10.1186/s13041-025-01185-y. PubMed |
| GABAergic Projections from the Pretectum Boost Retinogeniculate Signal Transfer via Disinhibition. Whitley JB, Masterson SP, Gordon T III, Whyland KL, Campbell PW, Zhou N, Govindaiah G, Guido W, Bickford ME. J Neurosci. 2025 May 28;45(22):e2325242025. doi: 10.1523/JNEUROSCI.2325-24.2025. PubMed |
| Presynaptic Mu Opioid Receptors Suppress the Functional Connectivity of Ventral Tegmental Area Dopaminergic Neurons with Aversion-Related Brain Regions. Wu Y, Perez-Rosello T, Awatramani R, Surmeier DJ. J Neurosci. 2025 Jul 9;45(28):e1194242025. doi: 10.1523/JNEUROSCI.1194-24.2025. PubMed |
| Thalamocortical feedback selectively controls pyramidal neuron excitability. Brandalise F, Chereau R, Chen IW, van Oorschot D, Morin Raig C, Bawa T, Mule N, Pages S, Markopoulos F, Holtmaat A. Nat Commun. 2025 Jul 1;16(1):5663. doi: 10.1038/s41467-025-60835-w. PubMed |
| Cell-type specific binocular interactions in mouse visual thalamus. Masterson SP, Govindaiah G, Guido W, Bickford ME. iScience. 2025 Jun 19;28(7):112956. doi: 10.1016/j.isci.2025.112956. eCollection 2025 Jul 18. PubMed |
| Ultrastructural analysis of synapses after induction of spike-timing-dependent plasticity. Wang R, Schweizer M, Anisimova M, Gee CE, Oertner TG. Cell Rep Methods. 2025 Aug 19:101142. doi: 10.1016/j.crmeth.2025.101142. PubMed |
| Effects of DNA methylation inhibitors on light-induced circadian clock plasticity. Kim S, McMahon DG. Neurobiol Sleep Circadian Rhythms. 2025 Aug 13;19:100134. doi: 10.1016/j.nbscr.2025.100134. eCollection 2025 Nov. PubMed |
| Synaptic organization and associative learning-related activity of basolateral amygdala interneurons. Baldi R, Muthuswamy S, Yasmin F, Quadir S, Zaidi D, Kwon M, Kandil I, Johnson K, Loomba N, Patel S. Cell Rep. 2025 Oct 28;44(10):116295. doi: 10.1016/j.celrep.2025.116295. Epub 2025 Sep 18. PubMed |
| Stage-dependent cerebrocerebellar communication during sensorimotor processing. Romano V, van Driessche M, van Wingerden N, Bauer S, Boeser B, Mejias JF, De Zeeuw CI. Nat Commun. 2025 Oct 3;16(1):8812. doi: 10.1038/s41467-025-64592-8. PubMed |
| Hippocampal Commissural Circuitry Shows Asymmetric cAMP-Dependent Synaptic Plasticity. Faiss L, Salivara A, Oldani S, Breustedt J, Schmitz D, Rost BR. ACS Chem Neurosci. 2025 Nov 5;16(21):4236-4245. doi: 10.1021/acschemneuro.5c00454. Epub 2025 Oct 13. PubMed |
| Superior Colliculus Projections Drive Dopamine Neuron Activity and Movement But Not Value. Poisson CL, Green IK, Stemmler GM, Prohofsky J, Wolff AR, Herubin C, Blake M, Saunders BT. J Neurosci. 2025 Nov 19;45(47):e0291252025. doi: 10.1523/JNEUROSCI.0291-25.2025. PubMed |
| Cholinergic-dependent dopamine signals in mouse dorsal striatum are regulated by frontal but not sensory cortices. Goldbach HC, Rimondini R, Swanson ES, Shin JH, Authement ME, Anderson LG, Kwon HB, Paletzki R, Gerfen CR, Amarante LM, Krauzlis RJ, Alvarez VA. bioRxiv [Preprint]. 2025 Sep 30:2025.09.30.679538. doi: 10.1101/2025.09.30.679538. PubMed |
| Cholecystokinin modulates age-dependent thalamocortical neuroplasticity. Li X, Feng J, Hu X, Zhou P, Chen T, Zheng X, Jendrichovsky P, Wang X, Chen M, Li H, Chen X, Zeng D, Zhang M, Xiao Z, He L, Bello ST, He J. Elife. 2025 Nov 20;13:RP101513. doi: 10.7554/eLife.101513. PubMed |
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