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  1. Synthetic Biology - Sensing and Signaling

    Type
    Collection
    ...for Sensing and Signaling.... Plasmid Collections Synthetic Biology Sensing and Signaling Synthetic Biology...Biology: Sensing and Signaling SynBio Resources SynBio Home Browse All SynBio Assembly Standards SynBio Blog...Metabolism Networks & Gene Regulation Sensing & Signaling Strains Browse Addgene's collection of synthetic...communications and environmental sensing. Sensing and Signaling Plasmids Search the table by keyword or sort by...
  2. Understanding GPCR Signaling Using TRUPATH

    Type
    Blog Post
    ... in decreased BRET2 signal. With increased concentration of drug, the BRET2 signal decreases. The...partial understanding of how GPCRs signal through G protein signal transducers. The TRUPATH collection...receptors (GPCRs), receptors that play many roles in signaling processes including smell, taste, sight, inflammation...to interrogate 14 of the 16 non-visual G protein signal transducers (collectively known as the transducerome...heterotrimeric G protein. This complex converts a signal received by a GPCR on the cell’s surface into action... result in the initiation of a vast number of signaling cascades, inducing different cellular responses...subunit from the Gβγ dimer, activating downstream signaling pathways.  This dissociation can be measured using...
  3. Lighting Up Cell Signaling with Photoswitchable Kinases

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    Blog Post
    ...the kinases are located, their signal strength, and how long their signals last all impact transduction ...feedback loops of signaling pathways Negative feedback loops are a common feature of signal transduction pathways...Signal transduction pathways are a lot like cell phone networks. Protein kinases deliver messages to ...transduction of the message. To study signaling pathways, scientists frequently use growth factors or serum to stimulate... but there can be a lot of static since other signaling networks can also be non-specifically activated...activated and, like the game of telephone, often the signal must be transmitted by intermediate messengers. ...kinase inhibitors to alter Raf1-MEK-ERK pathway signaling by using psMEK1 and an ERK kinase translocation...
  4. Plasmids 101: Terminators and PolyA signals

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    Blog Post
    ...conserved eukaryotic polyadenylation signal directs cleavage at the cleave signal and addition of a poly-A tail...elements, such as the polyadenylation or poly(A) signal. While many studies focus on promoter strength ...?curid=17554393   Use of mammalian poly(A) signals in combination with certain viral packaging systems...WPRE (5) and CTE (6), and/or use weaker poly(A) signals like BGH.  References Peters JM, Vangeloff AD...element of the simian virus 40 late polyadenylation signal by using in vitro analyses. Molecular and Cellular...Burns JE, Maitland NJ. An Internal Polyadenylation Signal Substantially Increases Expression Levels of Lentivirus-Delivered...
  5. Modulate the Activity of 17 Signaling Pathways with One Kit!

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    Blog Post
    ...identification of signaling pathways with potential to confer anticancer drug resistance." Science signaling 7.357...emerging theme is that they do so by activating signaling pathways controlling properties like growth, survival...kits/sabatini-wood-cancer-pathway-orfs/ Finding signaling pathways involved in drug resistance Wood wanted...exactly that. As described in the journal Science Signaling in December 2014, he and his colleagues at Duke... Institute and MIT, started with a list of 17 signaling pathways that are frequently implicated in cancer...
  6. Opto-Nanobodies: Using Light to Manipulate Cell Signaling and Protein Purification

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    Blog Post
    ...the extracellular signaling-regulated kinase (ERK) signaling cascade. This signaling is a lot like a game...control of signaling pathways. This is particularly exciting because using light to control signaling provides...that bind cell signaling receptors would offer more levers to pull to control signaling pathways. For ...as well as reversibly regulation of endogenous signaling activity in cells.  Let’s shed some light on the...for protein purification and controlling cell signaling. Key components of OptoNBs OptoNBs have two key...surface of a bead.  Using OptoNBs to control cell signaling The second application for OptoNBs takes us into...pharmacological or genetic manipulation of the signaling pathway.  As a proof-of-principle, the team created...
  7. AAV Titration by qPCR Using SYBR Green Technology

    Type
    Protocol
    ... background signal that is most evident during initial PCR cycles. This background signal must be removed... of primer dimers which can increase background signal and alter the Ct values of your samples. Quality...
  8. AAV ddPCR Titration

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    Protocol
    ...Denaturation 95 0.5 2 50 Annealing/Extension 60 1 2 50 Signal Stabilization 98 10 2 1 Hold 4 ∞ 2 1 After PCR ...
  9. Antibody Guide

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    Collection
    ...antibody and conjugate chosen. Signal Amplification The amount of signal needed from a specific antibody...abundant target, it obscures fainter signals. Fluorophores can emit signals that overlap with each other. Choose... Other Affinity Reagents Handling Visualization Signal Amplification Application Overview Quantification...Fc region. This allows for the amplification of signals by having multiple secondary antibodies binding...sdAbs is usually achieved by conjugation of a signaling molecule directly to the sdAb, or by using a secondary... incorporated in the sdAb. sdAbs can have weak signals due to their monovalent nature. Darpins - Darpins...single arm of the Y). They can be conjugated to signaling molecules and are often used in clinical applications...
  10. Fluorescent Protein Guide: Subcellular Localization

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    Collection
    ... retention signal moxGFP Erik Snapp 68126 ERoxBFP Endoplasmic Reticulum ER retention signal oxBFP Erik...structures. ID Plasmid Structure Targeting Gene/Signal Fluorescent Protein PI 98875 3xnls-mNeonGreen Nucleus...-derived (1-22 aa) import sequence and COX VIII signal peptide dL5 FAP; mCerulean3 Marcel Bruchez 44385...Lck-mTurquoise2 Plasma Membrane Lck N-terminal lipidation signal mTurquoise2 Dorus Gadella 98821 Lck-mScarlet-I ...Lck-mScarlet-I Plasma Membrane Lck N-terminal lipidation signal mScarlet-I Dorus Gadella 50057 pLYS1-FLAG-MitoGFP-HA...49151 mito-BFP Mitochondria mitochondrial targeting signal (COX4) TagBFP Gia Voeltz 55102 mCherry-Mito-7 Mitochondria...pTDpelB-C_sfYFPTwinStrep Periplasmic space PelB signal sequence YFP Thorben Dammeyer 54520 mCherry-Peroxisomes...
  11. Fluorescent Protein Guide: Biosensors

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    Collection
    ...sensing region of the construct leads to a change in signal of a circularly permuted fluorescent protein (cpFP...database includes many fluorescent biosensors that signal the presence of specific biomolecules, the activity...design, biosensors can enable investigation of a signaling pathway or measurement of a biomolecule while ...Conditions and constraints for astrocyte calcium signaling in the hippocampal mossy fiber pathway. Neuron...Single-color, ratiometric biosensors for detecting signaling activities in live cells. eLife. 2018 Jul 3;7....single-wavelength fluorescent sensor for cyclic AMP. Sci Signal. 2018 Mar 6;11(520). pii: 11/520/eaah3738. Justin...biosensors for sensitive and multiplexed detection of signalling activities. Nat Cell Biol. 2018 Sep 24. pii: ...
  12. mTOR Pathway

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    Collection
    ...pro-proliferative and anti-apoptotic signals. mTORC2, which appears to signal upstream of Akt, also promotes...Addgene's plasmids for the mTOR pathway. enhanced signaling of mTOR, a key metabolic regulator, correlates...better-characterized mTORC1 responds to various signals, including amino acids, stress, oxygen, energy ...levels, and growth factors. mTORC1 integrates these signals to determine the nutritional state of the cell ...cytoskeletal organization. Cancer Impact Enhanced signaling through either mTORC1 or mTORC2 correlates with...from David Sabatini & Kris Wood) References mTOR signaling in growth control and disease. Laplante M, Sabatini...
  13. Cancer Research Plasmids and Resources

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    Collection
    ...of plasmids for cancer research, organized by signaling pathway. ... large variety of resources for use in cancer signaling studies, including mutant, knockdown, and overexpression...below organizes the plasmids and resources by signaling pathway, focusing on the main pathways involved.... These pathways are important to normal cell signaling and physiology, and, when dysregulated, can enable... mTOR mTOR is a protein kinase that anchors a signaling network for transitioning between anabolic and... Labs containing cDNAs for studying oncogenic signaling pathways. ClonTracer Library : Barcoding library...
  14. Immunology Research Plasmids and Resources

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    Collection
    ... genes involved in innate and adaptive immune signaling and cell-cell communication....II molecules found on the surface of APC. BCR Signaling B cells mediate humoral immunity through the secretion... receptor (BCR). The strength and duration of signaling controls the fate of B cells and can lead to the...trigger. Interferons The interferon family of signaling proteins consists of Type I, Type II, and Type... 60 interleukins have been described. NK Cell Signaling Natural killer (NK) cells can kill cells that ...infected cell membrane, triggering cell death. TCR Signaling The T cell receptor (TCR) engages with antigen...immune system, Tumour Growth Factor beta (TGFbeta) signaling and its downstream effector molecules, the Smad...
  15. Ras Pathway

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    Collection
    ...GTPases serve as molecular switches that transmit signals within the cell. GTPases have an active (GTP) and...physiological conditions GTPases play prominent roles in signaling pathways regulating cell migration, survival, ...growth, and differentiation. Schematic of Ras signaling cascade that starts at the plasma membrane. Cancer...containing SPRY SPRY1 SPRY2 SPRY3 SPRY4 Sprouty RTK signaling antagonist STK STK3 STK4 Serine/threonine kinase...;1773(8):1177-95. PubMed PMID: 17428555 . RAS signaling pathways, mutations and their role in colorectal....i5.97. PubMed PMID: 23799159 . Targeting RAS signalling pathways in cancer therapy. Downward J. Nat Rev...
  16. Viral Vectors 101: Optogenetic Tools

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    Blog Post
    ...stimulation. GPCR signaling GPCR signaling is a complicated process involving many downstream signaling mechanisms...activating entire signaling pathways, but what if you’re interested in studying signaling pathways? Here’... secondary signaling pathways with light. This is achieved by coupling endogenous signaling molecules ...When exposed to light, they activate downstream signaling pathways that can change both the membrane potential...neurons without needing to consider secondary signaling pathways. There are many different opsin (natural...cellular function through multiple intra-cellular signaling cascades. Optical methods for controlling GPCR...light to control GPCR activation and downstream signaling cascades (reviewed in Abreu & Levitz, 2020), including...
  17. Antibodies 101: Secondary Antibodies

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    Blog Post
    ...low amounts or if the conjugated signaling molecule has a weak signal. For flow cytometry, secondary antibodies... after other signal amplification techniques have been ruled out.  Ease of access Signal amplification...immunoimaging. A scientist conjugates an antibody with a signaling molecule, the antibody binds to a protein, and... voila! Wherever your protein of interest is, a signal will also be. This is the direct approach to immunoimaging... if the direct approach isn’t giving you enough signal to detect your protein of interest, it may be time...primary antibody. In the indirect approach, the signaling molecule is conjugated to the secondary antibody...sensitivity of an assay by increasing the number of signaling molecules associated, indirectly, with each protein...
  18. GPCRs: How Do They Work and How Do We Study Them?

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    Blog Post
    ...are able to signal through more than one subtype. How GPCR signaling works GPCR signaling is initiated...subsequently another round of signaling.    Addgene Tools for Studying GPCR signaling  So with the hundreds ... three senses, GPCRs play roles in initiating signaling pathways in inflammation, and neurotransmission...neurotransmitters, photons or odorants, to elicit downstream signaling cascades.  So let’s break down the name "G-protein... G proteins are important molecular switches in signal transduction pathways and consist of a trimer of...subunits then induce or inhibit intracellular signaling cascades as a response to the extracellular stimuli...GPCRs out there, how can scientists decipher the signaling pathways from ligand to receptor to G-protein,...
  19. Flow Cytometry Readouts: Yes, No, and Everything in Between

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    Blog Post
    ... that the signal for the positive population is no higher than 105 signal intensity. Signals any higher...better. The histogram shows peaks of high signal densities, so signal shifts due to upregulation or downregulation...indicates a higher signal, or upregulation, and a peak to the left indicates a lower signal, or downregulation...higher for a signal peak that shifts to the right on a histogram plot and lower for a signal peak that shifts... the voltage will shift it to the left. If your signal is too high, lower the voltage to have your positive...GFP protein are most likely to be clustered at signals below 103, while the GFP+ population cluster would... in comparison, say somewhere between a 104–105 signal intensity. If your samples and controls were processed...
  20. Brain Initiative Collection

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    Collection
    ...Anion channelrhodopsin GtACR1 fused to ER export signal and targeted to the neuronal soma and proximal ...KGC-GFP-ER2 under the Syn promoter. Using bGHpA signal. Edward Boyden 115893-AAV8 pAAV-Syn-FLEX-rc [Archon1...floxed/reversed (Cre-dependent) manner. Using bGHpA signal. Edward Boyden 117382-AAV2 hSyn1-eYFP An AAV genome...for photoswitchable control of inhibitory GPCR signaling cascades. Michael Bruchas 139505-AAV8 pAAV-Ef1a-DIO-PPO-Venus...for photoswitchable control of inhibitory GPCR signaling cascades. Michael Bruchas 139505-AAV9 pAAV-Ef1a-DIO-PPO-Venus...for photoswitchable control of inhibitory GPCR signaling cascades. Michael Bruchas 140135-AAV1 pAAV-EF1a-iCreV...
  21. Working with Nuclear Receptors

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    Blog Post
    ... of multiple cell signaling systems. Activation of membrane receptors and signaling cascades conceivably...Nuclear Receptor Signaling. Dr. McKenna edits the website of the Nuclear Receptor Signaling Atlas (NURSA)...actions instigated by the central nervous system signaling to peripheral effector organs, which then return...actions on other tissues. At the Nuclear Receptor Signaling Atlas (NURSA), one of our primary goals is to ...permit the integration and communication of such signals between central and peripheral organs because of...molecular sensors and governors of endocrine-hormone signaling. The success of members of this group stems in...acetyltransferases or CARM1 methyltransferase. This attendant signaling feature afforded by coactivator complexes suggests...
  22. Corralling and Cornering the Goldilocks Antibody

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    Blog Post
    ...light to discern the signal. If the exposure time is long (e.g. > 1/7s) then the signal is weak and vice ... versa for a strong signal. However, exposure time and its relationship to signal depend on what you’re...prominent, strong signal has a shorter exposure time than the negative control, and a weak signal has a longer...sample with the primary included to confirm that the signal is from the primary antibody and not from the background...negative control, such as showing a very bright signal only in the hippocampus compared to other regions... antibody has specific binding and has a strong signal. We call the unique pattern of the antibody binding... an expectation and comparison on the antibody signal’s location. If a distinct imaged pattern does NOT...
  23. Troubleshooting and Optimizing a Western Blot

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    Blog Post
    ...In this example, a 1:1,000 dilution gives a high signal with low background. Created with biorender.com...during your transfer instead of one. If you see signal on both membranes, you know your protein is over-transferring...over-transferring! If you see very little signal, but you know you loaded a good amount of sample of a ...high background (insufficient blocking) or reduced signal (too much blocking.) If you’re having issues with...concentrations of blocking buffer. If you see a low signal, you can optimize blocking conditions by running...protein’s expected concentrations, you’ll see the signal increase as the concentration of the protein increases...samples. If multiple dilutions are showing the same signal (Figure 3B), that means the amount of protein loaded...
  24. Antibodies 101: The Four ELISAs and When to Use Them

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    Blog Post
    ...common enzyme-based reporter methods. For enzymatic signal detection, users provide a substrate that the enzyme...into a detectable product. Scientists compare the signal intensity of the sample to that of a standard curve...direct, indirect and sandwich ELISA the reporter signal is directly proportional to the level of antigen...sample whereas in a competitive ELISA the reporter signal is inversely proportional to the level of antigen...reacts with a provided substrate and produces a signal that is directly proportional to the level of antigen...background staining. Direct ELISAs also lack the signal amplification afforded by secondary antibodies ...single primary antibody and thereby amplify the signal. Since the primary antibody does not need to be...
  25. Antibodies 101: Reading a Flow Plot

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    Blog Post
    ...variations in fluorescent signals, and how the machine reads/interprets the signals, the axis is instead divided...the cut-off value for a positive signal (Figure 8). Note that the signal is actually on the X axis; what...passes through the machine’s lasers and gives off a signal read by the machine’s sensors. (Usually this something...(right.) Each event is plotted by the amount of signal read from Marker A and Marker B. Created with biorender.com... divided into positive and negative signal at a point on the axis determined by the researcher, based ...frequency of events on the Y axis and strength of signal read on the X axis may be presented. A horizontal...peak is sufficiently narrow to count as a “true” signal.  Figure 8: A series of histograms from ...
  26. Technologies Enabled by NanoLuc® Luciferase

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    Blog Post
    ...powerful the FRET signal. In well-designed FRET-based biosensors, the intensity of the FRET signal can be correlated...depolarization increases the BRET signal whereas hyperpolarization decreases the signal. The authors additionally...GpNLuc and OgNLuc BRET reporters produced bright signals without exogenous excitation and with OgNLuc being... later demonstrated a more than 2-fold brighter signal from Antares as compared to Fluc in this model....overcome these problems but has been hampered by dim signals from the coupled luciferase. This strategy was ...fusions coelenterazine intiates the fluorescent signal and these FP-RLuc8 fusions were dubbed Nano-Lanterns...proteins together thereby increasing their FRET signal. FRET is a non-radiative transfer of energy from...
  27. RANbodies: Reporter Nanobody Fusions

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    Blog Post
    ...they are detected with tyramide signal amplification. Tyramide signal amplification occurs when HRP converts... a ≥100-fold increase in signal over intrinsic fluorescence. Increased signal is likely due to lower background...cells and are secreted from cells due to their IgGκ signal peptide sequence, making them easy to harvest from...RANbody staining results in a ≥10-fold increase in signal over staining with a primary/ labeled secondary...is indistinguishable since they produce the same signal, so only one HRP-conjugated RANbody can be used...Method Uses Pros Cons Antigens HRP (P) Tyramide signal amplification of HRP Staining cultured cells and... and tissue sections Amplifying weak signals of fluorescent protein (i.e. GFP, RFP) Detecting GFP reconstitution...
  28. Viral Vectors 101: Voltage Indicators

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    Blog Post
    ...and fluorescent signaler. The pro of this system is the kinetic response time from signal input to readable... tools. Why Use Voltage Indicators? Electrical signals are integral to many facets of biology. For example...membrane of cardiac cells. Similarly, neuronal signaling is carried out by action potentials which are ...multiple cells to do things like translate perceived signals to physical actions. Understanding neuronal pathways... cells depends on the ability to monitor their signals – electricity! The research tools for studying ...which can make the kinetics of voltage sensing to signal output slightly slower than other approaches. Functionally... membrane, where it will then localize and emit signal from. This specific example is attractive due to...
  29. Using Ultrasound to Image Bacteria in vivo: Acoustic Reporter Genes

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    Blog Post
    ... detects the signal of the reporter and fail to pinpoint what tissue or organ this signal is coming from... existing bacterial reporters Limited Depth of Signal/Imaging: Fluorescent reporters are not as well ...confounding factors when attempting to interpret signals from these reporters. Lack anatomical context/spatial...also scatter sound waves and therefore produce signals in ultrasound imaging. Ultrasound is an attractive...for differentiation of arg1 and arg2 ultrasound signals. This also means that multiplexing is possible ... arg1 gas vesicles and restore their ultrasound signal. Using acoustic reporter genes for in vivo imaging...localize to somewhere in the mouse abdomen. arg1 signal, however, can be overlaid onto anatomical ultrasound...
  30. SunTag and Fluorescent Imaging

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    Blog Post
    ...SunTag signal allowed them to cut their laser power by over 80% and still obtain a higher signal-to-noise...transcriptional activation. Multiple nuclear localization signals (NLS) increase protein import into the nucleus....lesson and created a system to amplify fluorescent signals. Named for the "stellar explosion SUperNova," SunTag...have to increase your imaging time to get enough signal. This workaround risks cellular phototoxicity and...system amplifies the intensity of the fluorescent signal and enables single molecule tracking  within living...traditional fluorescent proteins Improved brightness and signal-to-noise ratio Less chance of phototoxicity Reduced...Marvin E., et al. “A protein-tagging system for signal amplification in gene expression and fluorescence...
  31. Luminescent Imaging with Nano-lanterns

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    Blog Post
    ...transfers energy to the FP, resulting in a fluorescent signal. Since their first publication in 2012, the Nagai...transiently expressed in cells, generates much less signal than comparable fluorescent proteins. This weak...brightness over previous BRET probes, with sufficient signal for in vivo and in vitro imaging. Saito et al. ...previously described applications, the enhanced signal of eNL allows their use for the first time in single...with an eNL-based calcium sensor displaying a 500% signal change upon calcium binding. Suzuki et al. also... using CRISPR/Cas9. eNLs offer high luminescent signal for imaging of low-copy number proteins, whereas...fluorescent imaging due to autofluorescence and a high signal-to-noise ratio. Despite the many benefits of Nano-lantern...
  32. Fluorescent Proteins 101: Visualizing Subcellular Structures & Organelles

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    Blog Post
    ...detection of one fluorescent signal in a channel setup for a different fluorescent signal) and photobleaching ...fusion protein localizes properly by comparing the signal from the fusion itself to the wild-type protein...you might use your fluoresent protein fused to a signal sequence that traffics the fluorescent protein ...the relative colocalization of their fluorescent signals and the potential overlap, it is possible to determine...software are highly sensitive to detecting light signals not visible to the human eye and are indifferent...upon the detection of 2 independent fluorescent signals and their potential overlap, it is essential to...influence each other and thus potentially falsify the signal. As a baseline rule, the emission spectra of the...
  33. Antibodies 101: Designing Your First Flow Panel

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    Blog Post
    ...-Cy7 would show a much brighter signal, while APC would show no signal at all, as it cannot be excited...fluorophores. A fluorophore's brightness refers to the signal strength of the emitted photons detected by the...cytometer. Brighter fluorophores have a stronger signal. Table 1: Degrees of brightness for a few commonly...fluorophore. The brighter a fluorophore, the better the signal-to-noise ratio, and the better the detection of...which creates a relatively stronger — or brighter — signal.   Figure 2: Excitation and emission spectra...Strong brightness makes it easier to distinguish a signal from noise; therefore, it is recommended to use... in our panel) will allow us to detect the eGFP signal. We will now exclude FITC from the rest of our ...
  34. Antibodies 101: Introduction to Gating in Flow Cytometry

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    Blog Post
    ...illumination (see Figure 2). H describes the maximum signal strength, while W results from the time that the...events) based on their expected size. The strong signals close to the graph’s origin mainly stem from cell...to increase the electric current and thereby the signal strength. So, we need to adjust the voltage in ... the cytometer’s software in order to generate signals in a reasonable range. If colleagues in your group...duplicates can’t be reliably analyzed on their staining signals. For this, you’ll need to gate based on the proportion...the separation pattern of positive vs. negative signal remains the same (Figure 5).   A.                                                                                                        ...describing the intensity and duration of the detected signal. Using a practical example of lymphocytes from ...
  35. A Control for All Seasons

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    Blog Post
    ...secondary antibody as usual and the signal measured. If a nonspecific signal is detected, the level of noise...undergo. If the antibody is specific, then the target signal will be present in the wild-type samples and absent...then stained with the preadsorbed antibody. If a signal is detectable, it is likely due to binding interactions...isotype-specific secondary antibodies.  Baseline secondary signaling levels In addition to the above-mentioned safeguards... order to correctly interpret your results, the signal from your target needs to be significantly higher..., secondary antibodies, and labels omitted. Any signal remaining is autofluorescence and should be considered...isotype primary antibody but you still observe a signal from your anti-Mouse IgG2a secondary antibody, ...
  36. Antibodies 101: Multiplex Immunofluorescence

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    Blog Post
    ...completely washed away and leave no signal. If you see lots of extra signal in these samples where you don’...simultaneously because you won’t know which label the signal is coming from. But by labeling sequentially with...labeling with the other, you can still record the signal separately for each target.   Figure 2:...targets you like. Plus, indirect IF amplifies the signal since multiple secondary antibodies will bind to...) Goat anti-Rabbit IgG   If you need more signal, another strategy is to use a biotinylated secondary... but can be especially helpful to generate more signal from low abundance targets. Analysis/Presentation...need to quantify the intensity of the different signals in a certain region or calculate a colocalization...
  37. Antibodies 101: Buffers, Storage, and Conjugates

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    Blog Post
    ..., as you risk getting so much signal that you’ll flood out other signals. But PE can be very helpful if...Fluorophores signal are actually quite broad, resulting in spectral overlap, or the signal "spilling over... final topic of this post, the conjugates, or signaling molecules! Please keep in mind that this is just...introduction to the wide, wild, and fascinating field of signaling molecules. Assay Type Westerns and ELISAs mostly...involve multiple antibodies, each with a different signaling molecule, that all need to be detected in the ...
  38. Antibodies 101: Validation

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    Blog Post
    ...will see a strong antibody signal in the retinal sample, but little to no signal in the liver sample, which...reduced or eliminated antibody signal. If you see a similar antibody signal between your control and your...line and see a great antibody signal in the non-mutant line but no signal in the mutant line! Recombinant...invariable expression and non-specific, background signal, so you’ll need a range of expression strengths...Genetic strategy and looks for increased antibody signal in samples that have had the target protein expression...
  39. Supporting Rare Disease Research with the 2020 BeHEARD Awards

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    Blog Post
    ...-, and intensity-based signaling biosensors to monitor intracellular signaling,” says Hébert. Previous...Prakash! Terry Hébert: How GNB1 mutations affect signaling pathways G protein-coupled receptors (GPCRs) detect...molecules outside of the cell and translate those signals into cellular responses. For example, GPCRs and...proteins, with an emphasis on oligomerization, signalling complex assembly, and localization to the nucleus...knowledge of GNB1 disorder by understanding affected signaling pathways and how they lead to neurological phenotypes...GNB1 mutations, the lab hopes to capture the signalosome of different receptors upon stimulation. “To ...
  40. Hot Biosensors 2022: Year-End Roundup

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    Blog Post
    ...illuminate RTK signaling Receptor tyrosine kinases (RTKs) are a major class of signaling receptors, but...sensors will be useful for investigating neuronal signaling and for engineering improved sensors for these...Aggarwal et al. 2022). This new version has higher signal to noise ratio and is better localized for synaptic...pYtags are an appealing tool for monitoring RTK signaling.  Figure 4: Design of pYtag fluorescent biosensors...spatiotemporal measurements of receptor tyrosine kinase signaling in living cells. bioRxiv 2022.08.13.503850; doi...level requires a probe with fast kinetics and high signal/noise ratio. Here, Takeharu Nagai and colleagues...
  41. Antibodies 101: Beyond Surface Labeling

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    Blog Post
    ... to any technique that combines a marker with a signal. For clarity, Addgene uses 'labeling' to refer ...secondary antibodies, increasing the fluorescence signal intensity. However, you need to be careful when...multiple primary antibodies, yielding a false positive signal. Dump gating When you are working with heterogeneous...the dye molecules are lost and the fluorescence signal weakens. (b) The heterogenicity of proliferative...population can be seen as a stepwise decrease in signal strength in a flow plot. d = days post treatment...on the cell surface, which yields a much weaker signal on live cells compared to dead cells. As a result...investigating negative regulators of T cells and cytokine signaling in tumor immunity. When he's not in the lab, Paul...
  42. Chemogenetics Plasmids

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    Collection
    ...relationship between neuronal signaling and behavior. Depending on the signaling pathway the engineered receptor...small molecules, allowing a scientist to control signaling within cells expressing these engineered receptors...
  43. New Neuroscience Tool: The iGluSnFR3 Glutamate Sensor

    Type
    Blog Post
    ... requiring high signal to noise ratios, imaging of high frequency glutamate signaling events, and accurately...communication and can trigger other forms of neuronal signaling and regulation. To create iGluSnFR, the Looger... in bacteria and produces stronger fluorescent signals upon sensing glutamate in mouse and ferret models...expression levels and produce stronger fluorescent signals upon sensing glutamate using both 1-photon and ...variants should enable scientists to robustly detect signaling events in the brain and beyond. These new iGluSnFR3...
  44. Fluorescent Proteins 101: Luciferase

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    Blog Post
    ... effectiveness. Analyze Cell Signaling Pathways Known cellular signaling pathways can be investigated ... assay, which ideally would have low background signal, high sensitivity and of course be quick, accurate...advantage of lower background levels and improved signal sensitivity since photons are simply measured –... Cofactors/Substrates Required Not Required Signal Strength Lower Higher Sensitivity Higher Lower...screen using luciferase activity as a measure of signaling activity. Multiple response elements are cloned...
  45. Technical Design of a Western Blot

    Type
    Blog Post
    ...available blockers that work as signal enhancers. These blockers amplify signal without increasing background... antigen, are cheap and can help amplify a weak signal. However, they have high cross-reactivity, vary...Monoclonal antibodies, on the other hand, may have lower signal, but they have higher specificity, lower cross-...can be stored for weeks to months without loss of signal. While not as sensitive as chemiluminescence enzymes...take multiple exposures for a blot with varying signals on it. It requires long exposure times (up to thirty...is… Save time Direct detection Decreased signal Nitrocellulose membrane Not recommended for...always available; cost varies widely Increase signal Polyclonal antibodies Higher non-specific binding...
  46. Synthetic Biology - Overview

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    Collection
    ...networks. Sensing and Signaling Browse plasmids related to intercellular signaling and environmental sensing...Pumps Voigt Lab Repressors , Terminators , Light Signaling , Sigma Factors , Resource Allocator and Orthogonal...
  47. Viral Vectors 101: Chemogenetics

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    Blog Post
    ...activated, chemogenetic receptors hijack cell signaling pathways and can lead to such responses as decreased...et al., 2014). The system allows you to study signaling pathways and the impacts of neural circuits on...excitability by lowering or raising the threshold for signaling. The two main classes of receptors currently used...for example, lowers the threshold for neuronal signaling and causes neuronal burst firing. Other DREADDs...threshold and silence neurons. DREADD-activated GPCR signaling can also modify other properties such as endogenous... Conklin BR (1999) Conditional expression and signaling of a specifically designed Gi-coupled receptor...
Showing: 1 - 50 of 261 results