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  1. New Tools Enable CRISPRa for Neuroscience Applications

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    Blog Post
    ...Neuron-optimized viral vectors Alternatively, Cas9 activators can be delivered to the CNS by lentivirus, which has...lentiviral vectors for in vitro and in vivo CRISPRa (Savell et al., 2019). This dual lentivirus system pairs...including transgenic mice, neuron-optimized viral vectors, and high-throughput screening approaches. Here...largely precludes delivery by adeno-associated vectors (AAV). This issue was recently circumvented by ...should be screened for activity in vitro and then packaged into AAV for in vivo delivery. Multiplex gene ... also possible and is only constrained by AAV packaging limits (i.e., how many sgRNA expression cassettes...has a larger packaging capacity than AAV. Such an approach was described recently by the Day Lab, who developed...
  2. Viral Vectors 101: The Retroviral Lifecycle

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    Blog Post
    ...blog Viral Vectors 101: Viral Vector Elements Viral Vectors 101: Types of Viruses Viral Vectors 101: Viral...components of the vector particle, some of the RT protein gets packaged inside of the vector particle, along...developed into retroviral vectors and 2.) a subclass of retroviruses called the lentiviruses (like HIV-1) — that...that have been developed into lentiviral vectors. Lentiviruses are sometimes referred to as “complex retroviruses...would not be great for a gene therapy vector! For viral vectors, only the protein for reverse transcriptase...and this is where viral vectors and natural viruses diverge. For the viral vector, its job as a tool is ...seem like an unlikely candidate to use as a viral vector, but retroviruses have been developed into some...
  3. Tips for Titering Your Lentiviral Preps

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    Blog Post
    ...cared for your packaging cell line, prepped your DNA, transfected and harvested your lentivirus. Now it’s ...Resources on the Addgene Blog Read Our Lentivirus FAQ Learn How Lentivirus is Used in CRISPR Genome-Wide Screening...primers that target the common features of viral vector backbones; once validated these universal primers...transfection; if preparing several different lentiviruses in parallel, this approach should be considered...higher than for functional assays depending on the vector backbone. When using qPCR based methods for viral...plasmid which can over-inflate results. A packing vector deficient in reverse transcriptase will produce...the number of target cells that are positive for vector encoded transgene expression following transduction...
  4. Tips for a 1st time AAV user (by a Rookie AAV user)

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    Blog Post
    ...analyses needed for packaging AAV. AAV production Overview: The first step in packaging AAV is transfecting...My lab's vector of choice is AAV, with nearly every experiment requiring AAV. Before joining my lab, ...had never worked with AAV, so naturally I had to package some virus for my first experiment. It was a bit...transfecting HEK293 cells with AAV packaging plasmids. The cells need three different plasmids to produce AAV...intermediate into the single-stranded genome that's then packaged into AAV’s protein shell, or capsid; 2) the pHelper...plasmid which encodes a transgene of interest that’s packaged into the virus. Two to five days after transfection...plasmids contain ITRs which are required for proper packaging of AAV, but also form secondary structures that...
  5. Viral Vectors 101: Pseudotyping

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    Blog Post
    ...lentiviral vector will infect, pseudotyping can help. In pseudotyping, you produce viral vectors using viral...such as lentivirus, retrovirus, and rabies virus. How to pseudotype To pseudotype your viral vector, you ...Sandoval S (2017) Pseudotyped Lentiviral Vectors: One Vector, Many Guises. Human Gene Therapy Methods ...To deliver genes using lentiviral vectors, you need an envelope protein on the virus’s surface and a ...you use the same protocol for generating lentivirus, but you use a different envelope glycoprotein instead...plasmid, (2) the envelope plasmid, and (3) the packaging plasmid. These are transfected into target cells... lentiviral particles.   Why pseudotype? Lentiviruses and retroviruses typically target immune cells...
  6. Viral Vectors 101: What is a Virus (and a Viral Vector)?

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    Blog Post
    ...Viral Vectors 101: Viral Applications Viral Vectors 101: Viruses as Biological Tools Viral Vectors 101:...create far safer viral vectors that can be used in BSL-1 or BSL-2 labs. Viral vectors are viruses that have...increase the viral vector’s carrying capacity. In order to allow the viral vectors to reproduce when experimentally...proteins are packaged in separate plasmids and expressed via cells cultured with the vectors. This allows...: AAVs, lentivirus, gamma retrovirus, and adenovirus. And now that you know what viral vectors are, it...of Viral Vectors 101 posts about each type, so be sure to check our blog, or our Viral Vectors 101 eBook...Viruses are simple: a genome packaged in a protein shell (Taylor, 2014). They’re so simple that we can...
  7. 15 Years of Addgene: The Top 15 Plasmids

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    Blog Post
    ...  Find the scrambled shRNA vector. pLKO.1 - TRC cloning vector - This vector from the David Root lab is...cloning vector. Tet-pLKO-puro - Tet-pLKO-puro contains all the necessary elements for packaging, reverse...our CRISPR posts Read our viral vector blog posts Read our lentivirus guide Resources on the Addgene ...opening our UK office in 2014, to starting our viral vector service in 2016...we’re excited to help scientists...psPAX2  - psPAX2 is a 2nd generation lentiviral packaging plasmid from the Didier Trono lab that expresses... be used with 2nd or 3rd generation lentiviral vectors and an envelope expressing plasmid, such as our...lentiCRISPR v2 - This 3rd generation lentiviral transfer vector also from the Zhang lab is used to deliver Cas9...
  8. AAV Vector Quality Control: Going the Extra Mile with NGS

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    Blog Post
    ...helper plasmids or the cell genome can be packaged inside the vectors during production. These impurities cannot...sequence all the DNA packaged inside the viral particles (Figure 1). Briefly, packaged DNA is extracted from... to find DNA from the packaging cell genome, bacterial genomes, cloning vectors, and helper plasmids (...blog Check out our Viral Vectors Featured Topic Page Subscribe to Viral Vectors Blog Posts Learn How We... of poor reagent quality. To make sure our AAV vectors are of the highest quality, we undertake a rigorous...To make sure that adeno-associated viral (AAV) vectors available at Addgene are suitable for in vivo studies...should you care about viral quality control? AAV vectors are produced by scientists - not robots. Unfortunately...
  9. Viral Vectors 101: An Introduction to AAV

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    Blog Post
    ...(scAAV) vector. Full-length ssAAV vector genome of both polarities are rescued from the vector plasmid...of capsid (outer protein shell) used to package an rAAV vector; these capsids allow the virus to infect...genes, you can design single rAAV vectors with multiple genes packaged in them and use elements such as... Primer for Beginners Read Our Lentivirus FAQ Learn about Viral Vector Elements Resources on Addgene....Addgene.org Read Our AAV Guide Find AAV Vectors Browse All Viral Vector Resources ... is a single stranded, Parvoviridae DNA virus, packaged in a non-enveloped icosahedral capsid, that can...a type 2 ITR and a type 8 serotype. Almost all vectors contain type 2 ITRs, which comes from the AAV2 ...
  10. Lentivirus Plasmids

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    Collection
    ...Libraries All Viral Plasmids Packaging Plasmids Transfer Plasmids Lentiviruses, a subset of retroviruses,... Lentiviral Envelope and Packaging Plasmids One safety feature of lentivirus used in research is that ... envelope and packaging plasmids that can be used with 2nd and 3rd generation lentivirus technologies....along with additional packaging components Trono 63586 psPAX2-D64V 2nd Packaging For making Integrase ...Integrase deficient lentivirus Rawlings , Scharenberg 12251 pMDLg/pRRE 3rd Packaging Contains Gag and Pol; can...22500 pNHP 2nd Packaging Contains gag, pol, tat, rev Kasparov 1732 pCPRDEnv 2nd Packaging part of the FELIX...strain). Use with packaging construct encoding Tat. Reiser 17531 pCD/NL-BH*DDD 2nd Packaging Contains Gag/...
  11. Viral Production at Addgene

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    Blog Post
    ... with viral vector manufacturing facilities, such as the University of Pennsylvania Vector Core. Transfections...Pennsylvania Vector Core. In general, titering is performed by the facility that produced the viral vector lot....Empty vector particles can be identified after negative staining and appear darker than full vector particles...Electron micrograph of AAV vector preparation shows that the vast majority of the vectors consist of full particles...our virus protocols. Browse our AAV vector collection. Lentivirus Production Lentiviral preparations ...to determine which facility produced your viral vector lot. At Addgene, AAV particles are titered by droplet...method.  Titering by the University of Pennsylvania Vector Core is (as of April 2016) also performed by ddPCR...
  12. Delivery Methods for Generating iPSCs

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    Blog Post
    ...single polycistronic vector or multiple single-gene vectors can be used to package reprogramming factors...reprogramming vectors available from Addgene. Another drawback is that lentiviral vectors insert in different...Cre-lox lentiviral vectors: This approach is the same as using a standard lentiviral vector, but transient...Non-integrating iPSC delivery methods Viral Vectors Adenovirus: Adenoviral vectors infect dividing and nondividing...nondividing cells and have an ~8kb packaging capacity. With this packaging capacity, reprogramming factors can...reprogramming factors: Mouse Expression Vectors Human Expression Vectors Carey et al Hockemeyer et al Brambrink...transgene reactivation, residual expression Lentivirus Integrating High Low Efficient and Stable Genome...
  13. Important Considerations When Using AAVs

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    Blog Post
    ...-associated viral vectors: packaging capacity and the role of rep proteins in vector purity." Human gene...interest. Although they have a small packaging capacity, AAV vectors were suitable for our needs for the... AAV vectors without specific facilities (Biosafety Level-1). Other possible tools, lentiviruses for example...Immune Response: Compared to other viral vectors (e.g. Lentivirus, Adenovirus) AAVs cause the least amount...Cas9 and AAV Viral Vector Elements Additional Resources on Addgene.org Find AAV Vectors for Your Research...Future? I knew little about adeno-associated Viral Vectors (AAVs) before starting my graduate program at the...in locomotion. We have relied heavily upon AAV vectors to deliver chemogenetic/optogenetic constructs ...
  14. Lentiviral Prep Service

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    ... Viral Vector Packaging Service Lentivirus Browse In-Stock Lentivirus Pooled CRISPR Libraries...details about our viral vector packaging service, visit our Viral Vector Packaging Service page . Pooled...Ready-to-use lentivirus available from Addgene's viral vector packaging service. Browse constructs currently...Pooled Barcoding Libraries Control Addgene's lentiviruses are made from plasmids that are currently in... viral preparation from the inventory below. Lentiviruses are distributed as purified viral particles ...non-targeting controls Puromycin Doench , Root Cas9 Lentivirus Cas9 viruses can be used to interrogate the genome... (D10A, N863A) Blasticidin 3rd generation lenti vector encoding dCAS9-VP64 with 2A Blast resistance marker...
  15. Viral Vectors 101: Biosensors

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    Blog Post
    ...engineered into viral vectors, so if you want to use them, you’ll need to use the vectors (or redesign the ...choose lentivirus, gamma retrovirus, or AAV as your vehicle, we’ve got you covered with packaging plasmids...with some of our most popular biosensors already packaged and ready to deliver. Ready to give biosensors...Biosensors Viral Service: Biosensor AAV Viral Vectors 101 eBook Resources on the Addgene blog An Overview...
  16. Viral Vectors 101: Producing Your rAAV

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    Blog Post
    ...production process.  Helper-free production Unlike lentivirus, AAV does not possess the ability to replicate...adenoviral helper genes are supplied on two different packaging plasmids: the pHelper plasmid containing Ad E2A...you’ll need to determine the titer of your viral vector solution. A variety of titering methods have been...about common AAV applications by reading our Viral Vectors 101 series!  This post was originally written by... Unpurified Recombinant Adeno-Associated Viral Vectors [Preprint]. Molecular Biology. https://doi.org/... of AAV-2 particles via a novel capsid ELISA: Packaging of genomes can limit production of recombinant...the Stability and Inactivation of AAV Serotype 1 Vectors. Human Gene Therapy Methods, 28(1), Article 1. ...
  17. DAP arrays for multiplex gene editing

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    Blog Post
    ...limited the number of gRNAs that can be packaged into viral vectors for potential in vivo applications or... Lab packaged MBE and MPE elements for deliveries via adeno-associated virus (AAV) and lentivirus, demonstrating...unprecedented number of genes with a single viral vector.   Fig. 1: Schematic of multiplex gene ...is scalable and efficient in plasmid and viral vectors. In applications when repetitive tRNA sequences...
  18. Viral Prep Service for Plasmids and Pooled Libraries

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    Collection
    ...’ll make the viral vector prep you need. Packaged on Request Viral Vector Packaging Service Information...technologies. Penn Vector Core AAV Vectors Many AAV vectors from the Penn Vector Core have been transferred to Addgene... Viral Vector Packaging Service Addgene produces high-quality viral vector preps...ready-to-ship AAV or lentivirus prep for your next experiment today! Browse AAV | Browse Lenti Packaged on Request...about viral vector production at Addgene, ordering information, and more. Additional Viral Vector Resources...biosafety of viral vectors, and general biosafety guidelines. Addgene Blog: Viral Vector Posts Content from...aspects of viral vectors, including troubleshooting advice and explanations of viral vector technologies....
  19. CRISPR 101: Epigenetics and Editing the Epigenome

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    Blog Post
    ... protein, and this fusion allows for packaging into viral vectors and targeted delivery into hard-to-manipulate...modifications to DNA or histones, the proteins that help package DNA, were associated with gene expression or silencing...methylation and activate transcription. A lentiviral vector with the same modifier, Fuw-dCas9-Tet1CD, is available...Jaenisch’s lab in plasmid form or as ready-to-use lentivirus. Figure 2: dCas9-Tet1 demethylates cytosines...with the former also available as ready-to-use lentivirus. Figure 3: dCas9-DNMT3A methylates cytosines... targeted enhancers. Although the lab used this vector in chick embryos, it also functions in mammalian...targeting to a wider set of genomic targets. These two vectors are part of the larger pMVP/pMAGIC cloning system...
  20. CRISPR 101: Mammalian Expression Systems and Delivery Methods

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    Blog Post
    ... in a single lentiviral transfer vector or separate transfer vectors. May contain reporter gene (e.g. ...with SaCas9 (packaging limit ~4.5kb). CRISPR elements are inserted into an AAV transfer vector and used to...Components of System Application Mammalian expression vector Promoter driving Cas9 expression can be constitutive...selection marker to generate stable cell lines. Packaging and Envelope plasmids provide the necessary components...Difficulty Very easy Very hard Viral delivery   Lentivirus Retrovirus AAV Cells Dividing or nondividing...
Showing: 21 - 40 of 62 results