We narrowed to 200 results for: ADAP
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TypeBlog Post...efficiencies at different loci in U2OS cells. Image adapted from Yan et al. 2024 under a CC-BY license. ...transduction efficiency for the indicated ssAAV5s. Figure adapted from Serrano et al. 2023 under a CC-BY-NC-ND license...
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What's Your Organism? Expanding Genomic Tools via the NSF EDGE Program
TypeBlog Post...studied in 40 labs as a great model for plant adaptation and speciation. Their phenotypes are diverse ...captivity. Sticklebacks demonstrate unusual parallel adaptation to disparate environments so can be used study... -
To Codon Optimize or Not: That is the Question
TypeBlog Post...the late 1980s, scientists even created a codon adaptation index (CAI) that is based on the codon usage ...10.1038/nrg3051 Sharp PM, Li W-H (1987) The codon adaptation index-a measure of directional synonymous codon... -
The PAM Requirement and Expanding CRISPR Beyond SpCas9
TypeBlog Post...applications. The first non-Cas9 CRISPR protein adapted for genome engineering was Cas12a (formerly Cpf1...targeting flexibility. Cas13a (formerly C2c2) has been adapted for targeted RNA cleavage in mammalian cells. The... -
Four Base Editing Reporters to Monitor and Enrich Editing in Real-time
TypeBlog Post...reporter, and neomycin resistance reporter. Image adapted from Katti et al., 2020. As a proof of concept...Gaudelli et al., 2017). GO is thus a flexible and adaptable tool to identify and enrich for base-editing events... -
Bioinformatics at Addgene
TypeBlog Post...have been developed for a singular purpose (ex. adapter trimming, quality score analysis, k-mer counting...Java, R, etc.) in our pipeline. Crucially, this adaptable property gave us the freedom to use multiple open-source... -
Hot Plasmids - November 2023
TypeBlog Post...trafficked from the “source” to “destination”. Images adapted from Lee and Cheah et al. 2023 bioRxiv (A) and ...:GFP-iPAK4 at 3 or 6 h. Scale bar 5 µm. Images adapted from Lin et al., 2023 bioRxiv, under CC-BY-NC 4.0... -
Hot Plasmids: Summer 2024
TypeBlog Post...structure of the H1.8-GFP-bound nucleosome. Images adapted from Arimura et al. 2024 under CC-BY-NC-ND 4.0 ...3D map with 3.1 Å global resolution (E). Figure adapted from Abe & Lim, 2024 under CC-BY-NC-ND 4.0 license... -
Hot Plasmids: Spring 2025
TypeBlog Post...Rising τ, and Decay τ of the three sensors. Image adapted from Aggarwal et al. 2025 under a CC-BY-NC-ND 4.0...displaying characteristic PV basket cell morphology. Adapted from Furlanis, Dai, Leyva Garcia et al. 2024 bioRxiv... -
Recombinase-based State Machines Enable Order-dependent Logic in vivo
TypeBlog Post...straight-forward, concise explanation of how to adapt our engineered devices, recombinase-based state ...not expressed in each state. To help researchers adapt GRSMs for their research, we provide MATLAB-based... -
Finding Your Perfect Job After University
TypeBlog Post... culture, and also needed to be resourceful and adapt. By the end of my three months, I fully understood...companies which have more bureaucracy and cannot be as adaptive. I was also surprised to learn that I enjoy ... -
Live and Let Dye: Self-Labeling Protein Tags
TypeBlog Post...black is the fusion tag or labeling system. Image adapted from Lavis, 2016, under CC-BY. Common self-...comparison with standard confocal microscopy. Image adapted from (Bottanelli et al., 2016) under CC-BY license... -
When Fidelity Matters: A frank discussion about ligase fidelity
TypeBlog Post...recombinant plasmid construction (restriction cloning), adaptor ligation for next generation sequencing (NGS) library...PMCID: PMC1978145. 27. Greenough, Lucia, et al. "Adapting capillary gel electrophoresis as a sensitive, ... -
RNA Interference in Plant Biology: New Tools for an Old Favorite
TypeBlog Post...codons, and/or the phenomenon of transcriptional adaptation (Smits et al., 2019; Sztal and Stainier, 2020...Sztal TE, Stainier DYR (2020) Transcriptional adaptation: a mechanism underlying genetic robustness. Development... -
Plasmids 101: Modular Cloning Applications and Kits
TypeBlog Post... you probably realize by now, MoClo is a very adaptable system with lots of tools and reagents already...acssynbio.3c00423. Pérez-González, Ana, et al. “Adaptation of the GoldenBraid Modular Cloning System and... -
Protocol - Over-Agar Antibiotic Plating
TypeProtocol...selection with carbenicillin; however it can be adapted for any antibiotic through the use of a selection... -
Fluorescence Titering Assay
TypeProtocol...protocol was developed for 293T cells but can be adapted to a variety of target cell lines and selection... -
General Transfection
TypeProtocol...HEK293T cell line should work. This approach can be adapted for different cell lines and different transfection... -
Colony Formation Titering Assay
TypeProtocol...protocol was developed for A549 cells but can be adapted to a variety of target cell lines and selection... -
Viral Vectors 101: Systemic Capsids
TypeBlog Post...protocols, visit https://clover.caltech.edu. Figure adapted from Challis et al. 2022. Image created with BioRender.com...New World Monkeys and rodents. Image and caption adapted from Campos et al., 2023. AAV.CAP-Mac is a...