We narrowed to 214 results for: DAP
-
TypeBlog Post...their devices, which makes it very difficult to adapt the device to one's own samples and limits the use...to as 'frugal science', existing components are adapted and combined with creativity and feedback from ...
-
What's New in CRISPR - November 2021
TypeBlog Post...packaging into virus-like particles. Feng Zhang’s lab adapted the native PEG10 RNA sequences to instead drive...delivering gene editing tools into cells. Image adapted from Segel et al. 2021. Prime editing improvements... -
Pairing CombiGEM and CRISPR for Combinatorial Genetic Screening
TypeBlog Post...for assembling the barcoded gRNA library pool. (Adapted from Wong et al., 2016). With a list of gRNA...assembling barcoded combinatorial gRNA libraries. (Adapted from Wong et al., 2016). With CombiGEM and ... -
Teaching an Old DOG New Tricks: Controlling Protein Activity with GFP
TypeBlog Post...in optogenetics, opening up the possibility of adapting GFP lines for optogenetics experiments in specific...transcription activation domains. Both systems are easily adaptable to neuroscience applications, including optogenetics... -
CRISPR 101: Cas9 vs. The Other Cas(s)
TypeBlog Post...features and evolved PAM sites, making Cas9 an adaptable choice for many genome engineering endeavors. ... Choosing a Cas While Cas9 may be the most adaptable Cas currently available, the other Cas proteins... -
Plasmids 101: Golden Gate Cloning
TypeBlog Post...few steps. More recently, CRISPR technology has adapted Golden Gate cloning for inserting the appropriate...single gRNA-expressing plasmid, but it can also be adapted to express multiple gRNAs. Addgene has two Golden... -
CRISPR 101: Targeting Non-Coding RNAs with CRISPR/Cas9
TypeBlog Post...polyadenylation (spA) signal. Figure and caption adapted from Hazan and Bester 2021. Alternative ...Programmable Dual-RNA–Guided DNA Endonuclease in Adaptive Bacterial Immunity. Science. 2012;337(6096):816... -
Cpf1 Update: Comparison to Cas9 and NgAgo
TypeBlog Post... the simplest CRISPR systems and the easiest to adapt to genome editing, but the introduction of type ...positions are indicated below each graph. Figure adapted from Kleinstiver et al., 2016. Until recently... -
Magnetic Control of Proteins: More than a Dream
TypeBlog Post...MagLOV’s parent protein AsLOV2 has already been adapted into a variety of optogenetic tools, they’re optimistic...optimistic that MagLOV can be similarly adaptable into future magnetogenetic tools. Embracing science... -
Fluorescent Proteins 101: Visualizing Subcellular Structures & Organelles
TypeBlog Post...colocalization analysis example is given in Figure 2 (adapted from 4) - Dunn et al. 2011 provides an in-depth.... PubMed Central PMCID: PMC3074624. 5. Bindels, Daphne S., et al. "mScarlet: a bright monomeric red fluorescent... -
CrispyCrunch: High-throughput Design and Analysis of CRISPR+HDR Experiments
TypeBlog Post...section below.) For guide design, we decided to adapt the popular guide design tool Crispor by Max Haeussler...Crispresso CrispRVariants AmpliCan We chose to adapt Crispresso by Luca Pinello and Kendell Clement for... -
INTEGRATE: Bacterial Genome Engineering Using CRISPR-Transposons
TypeBlog Post...spreading within and between genomes, and have been adapted for a wide variety of applications - as mutagenesis...at two different incubation temperatures. Data adapted from Vo et al., 2020. In E. coli, the new streamlined... -
Bioinformatics at Addgene
TypeBlog Post...have been developed for a singular purpose (ex. adapter trimming, quality score analysis, k-mer counting...Java, R, etc.) in our pipeline. Crucially, this adaptable property gave us the freedom to use multiple open-source... -
The PAM Requirement and Expanding CRISPR Beyond SpCas9
TypeBlog Post...applications. The first non-Cas9 CRISPR protein adapted for genome engineering was Cas12a (formerly Cpf1...targeting flexibility. Cas13a (formerly C2c2) has been adapted for targeted RNA cleavage in mammalian cells. The... -
Four Base Editing Reporters to Monitor and Enrich Editing in Real-time
TypeBlog Post...reporter, and neomycin resistance reporter. Image adapted from Katti et al., 2020. As a proof of concept...Gaudelli et al., 2017). GO is thus a flexible and adaptable tool to identify and enrich for base-editing events... -
What's Your Organism? Expanding Genomic Tools via the NSF EDGE Program
TypeBlog Post...studied in 40 labs as a great model for plant adaptation and speciation. Their phenotypes are diverse ...captivity. Sticklebacks demonstrate unusual parallel adaptation to disparate environments so can be used study... -
Hot Plasmids Spring 2024
TypeBlog Post...efficiencies at different loci in U2OS cells. Image adapted from Yan et al. 2024 under a CC-BY license. ...transduction efficiency for the indicated ssAAV5s. Figure adapted from Serrano et al. 2023 under a CC-BY-NC-ND license... -
Hot Plasmids - November 2023
TypeBlog Post...trafficked from the “source” to “destination”. Images adapted from Lee and Cheah et al. 2023 bioRxiv (A) and ...:GFP-iPAK4 at 3 or 6 h. Scale bar 5 µm. Images adapted from Lin et al., 2023 bioRxiv, under CC-BY-NC 4.0... -
To Codon Optimize or Not: That is the Question
TypeBlog Post...the late 1980s, scientists even created a codon adaptation index (CAI) that is based on the codon usage ...10.1038/nrg3051 Sharp PM, Li W-H (1987) The codon adaptation index-a measure of directional synonymous codon... -
Hot Plasmids: Summer 2024
TypeBlog Post...structure of the H1.8-GFP-bound nucleosome. Images adapted from Arimura et al. 2024 under CC-BY-NC-ND 4.0 ...3D map with 3.1 Å global resolution (E). Figure adapted from Abe & Lim, 2024 under CC-BY-NC-ND 4.0 license...